BAC Information

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BAC

Clone NameB6Ng01-169N23
Chromosome4 (Build37)
Map Location 64,785,229 - 64,874,511
singlet/doubletdoublet
Overlap genePappa
Upstream genenone
Downstream geneAstn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169N23.bB6Ng01-169N23.g
ACCDH960731DH960732
length392954
definitionDH960731|Mus musculus domesticus DNA, BAC clone: B6Ng01-169N23, 5' end.DH960732|Mus musculus domesticus DNA, BAC clone: B6Ng01-169N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,785,229 - 64,785,626)(64,873,556 - 64,874,511)
sequence
agccgaccagtgtgttagaggagattttttttaagagctagaaatatata
aaataaaatgaaataaaacaaggaggaaggcatccagctgttagaagggg
ggataaggcagataaaggagcggggagagaaattaattgccaaccaggag
gagttggactgtatttttgaaaggtggggggagtggagcacacaccttga
ggaggaaagcgagaaagaaaagaaaaaagcaagtggaaggggggctcgca
cgagaaaggaggcaaatagtagtgcgagctaaagctggcagctccgggcg
gcggtgcaggggcgcagggggggcgggggggaccgtcggacatgcggctc
tggagttgggtgctgcgcctggggctgctgagcgccgcgctg
gaattcactatttatgctataatgcaccatgttcataccaactactgatg
gggtaaattaacagactcaaatggggaaaaattctaatgaagagcacaat
aatttgcattctcagaatggtatttgtggaatccattaaaatggaaaagg
tccagagcttatgtgccagcaattctatttaccaatattgaccctaagca
catgctcatatatttgtgctaacatggaagtttgtacaagaacaccaact
gcagcagatttcccgaagtgataacatagaaaatacagactctattattt
ccttacttatatttaataaaaaataggtgaaataacagaaaccccaatct
ttatggcatctgactaagtaacctggggaatatttgttttgtggtaataa
gagaacagtttaagtaaagagtaaagttatttcaattgtgggaaactgga
tagaacttcaggacatggagccaagtaagctagattcaggacatactgtg
gttccccttctgaaacacagatagatagacagatggacatggaagacaaa
gaagagctatttgagggacagaagaaatataaggatggagcattaatgga
aaagagaacaatggatagaaaagaggagggtaaatcctgactgcttttct
tcaaatgtcaaaactacgctgaaatatatacacaattgacttgttatgga
gagagatatagatataaaagagttgggaaagcgtgagtggggtgatggga
tgaatatgagcaaagtataataatatgggaacatggaattatcacaatga
actcattctttgtgtaataatgaaaacttaatagtaaataaatagctgta
caaaccaaacagataagccagaatgccattattctacttcaggttctaca
tgtgaggtgggttgagcttgtacaccgatgagttccctgcctgtctcctt
catt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_64785229_64785626
seq2: B6Ng01-169N23.b_50_447

seq1  GAATTCAGCCGACCAGTGTGTTAGAGGAGATTTTTTTTAAGAGCTAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCGACCAGTGTGTTAGAGGAGATTTTTTTTAAGAGCTAGAAA  50

seq1  TATATAAAATAAAATGAAATAAAACAAGGAGGAAGGCATCCAGCTGTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAATAAAATGAAATAAAACAAGGAGGAAGGCATCCAGCTGTTAG  100

seq1  AAGGGGGGATAAGGCAGATAAAGGAGCGGGGAGAGAAATTAATTGCCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGGATAAGGCAGATAAAGGAGCGGGGAGAGAAATTAATTGCCAAC  150

seq1  CAGGAGGAGTTGGACTGTATTTTTGAAAGGTGGGGGGAGTGGAGCACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGAGTTGGACTGTATTTTTGAAAGGTGGGGGGAGTGGAGCACACA  200

seq1  CCTTGAGGAGGAAAGCGAGAAAGAAAAGAAAAAAGCAAGTGGAAGGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGGAGGAAAGCGAGAAAGAAAAGAAAAAAGCAAGTGGAAGGGGGG  250

seq1  CTCGCACGAGAAAGGAGGCAAATAGTAGTGCGAGCTAAAGCTGGCAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCACGAGAAAGGAGGCAAATAGTAGTGCGAGCTAAAGCTGGCAGCTC  300

seq1  CGGGCGGCGGTGCAGGGGCGCAGGGGGGGCGGGGGGGACCGTCGGACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCGGCGGTGCAGGGGCGCAGGGGGGGCGGGGGGGACCGTCGGACATG  350

seq1  CGGCTCTGGAGTTGGGTGCTGCGCCTGGGGCTGCTGAGCGCCGCGCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCTGGAGTTGGGTGCTGCGCCTGGGGCTGCTGAGCGCCGCGCTG  398

seq1: chr4_64873556_64874511
seq2: B6Ng01-169N23.g_66_1019 (reverse)

seq1  AATGA---AGACAGGCAGGGAAACTCATCGGTGTACAAGCTCAACCACAC  47
      |||||   |||||||||||| ||||||||||||||||||||||||| |||
seq2  AATGAAGGAGACAGGCAGGG-AACTCATCGGTGTACAAGCTCAACC-CAC  48

seq1  CTCACATGTAGAACCTTGAAGTAGAAATAATGGCATTCTGGCTTATCTGT  97
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  CTCACATGTAGAACC-TGAAGTAG-AATAATGGCATTCTGGCTTATCTGT  96

seq1  TTGGTTTGTACAGCTATTTATTTACTATTAAGTTTTCAATTATTACACAA  147
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGGTTTGTACAGCTATTTATTTACTATTAAGTTTTC-ATTATTACACAA  145

seq1  AGAATGAGTTCATTGTGATAATTCCATGTTCCCATATTATTATACTTTGC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGTTCATTGTGATAATTCCATGTTCCCATATTATTATACTTTGC  195

seq1  TCATATTCATCCCATCACCCCACTCACGCTTTCCCAACTCTTTTATATCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTCATCCCATCACCCCACTCACGCTTTCCCAACTCTTTTATATCT  245

seq1  ATATCTCTCTCCATAACAAGTCAATTGTGTATATATTTCAGCGTAGTTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTCTCCATAACAAGTCAATTGTGTATATATTTCAGCGTAGTTTT  295

seq1  GACATTTGAAGAAAAGCAGTCAGGATTTACCCTCCTCTTTTCTATCCATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTGAAGAAAAGCAGTCAGGATTTACCCTCCTCTTTTCTATCCATT  345

seq1  GTTCTCTTTTCCATTAATGCTCCATCCTTATATTTCTTCTGTCCCTCAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTTTCCATTAATGCTCCATCCTTATATTTCTTCTGTCCCTCAAA  395

seq1  TAGCTCTTCTTTGTCTTCCATGTCCATCTGTCTATCTATCTGTGTTTCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTTCTTTGTCTTCCATGTCCATCTGTCTATCTATCTGTGTTTCAG  445

seq1  AAGGGGAACCACAGTATGTCCTGAATCTAGCTTACTTGGCTCCATGTCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAACCACAGTATGTCCTGAATCTAGCTTACTTGGCTCCATGTCCT  495

seq1  GAAGTTCTATCCAGTTTCCCACAATTGAAATAACTTTACTCTTTACTTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCTATCCAGTTTCCCACAATTGAAATAACTTTACTCTTTACTTAA  545

seq1  ACTGTTCTCTTATTACCACAAAACAAATATTCCCCAGGTTACTTAGTCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCTCTTATTACCACAAAACAAATATTCCCCAGGTTACTTAGTCAG  595

seq1  ATGCCATAAAGATTGGGGTTTCTGTTATTTCACCTATTTTTTATTAAATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATAAAGATTGGGGTTTCTGTTATTTCACCTATTTTTTATTAAATA  645

seq1  TAAGTAAGGAAATAATAGAGTCTGTATTTTCTATGTTATCACTTCGGGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAGGAAATAATAGAGTCTGTATTTTCTATGTTATCACTTCGGGAA  695

seq1  ATCTGCTGCAGTTGGTGTTCTTGTACAAACTTCCATGTTAGCACAAATAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGCAGTTGGTGTTCTTGTACAAACTTCCATGTTAGCACAAATAT  745

seq1  ATGAGCATGTGCTTAGGGTCAATATTGGTAAATAGAATTGCTGGCACATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCATGTGCTTAGGGTCAATATTGGTAAATAGAATTGCTGGCACATA  795

seq1  AGCTCTGGACCTTTTCCATTTTAATGGATTCCACAAATACCATTCTGAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGACCTTTTCCATTTTAATGGATTCCACAAATACCATTCTGAGA  845

seq1  ATGCAAATTATTGTGCTCTTCATTAGAATTTTTCCCCATTTGAGTCTGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATTATTGTGCTCTTCATTAGAATTTTTCCCCATTTGAGTCTGTT  895

seq1  AATTTACCCCATCAGTAGTTGGTATGAACATGGTGCATTATAGCATAAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACCCCATCAGTAGTTGGTATGAACATGGTGCATTATAGCATAAAT  945

seq1  AGTGAATTC  956
      |||||||||
seq2  AGTGAATTC  954