BAC Information

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BAC

Clone NameB6Ng01-170C12
Chromosome4 (Build37)
Map Location 36,617,346 - 36,686,427
singlet/doubletdoublet
Overlap genenone
Upstream geneLingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170C12.bB6Ng01-170C12.g
ACCDH960941DH960942
length7241,021
definitionDH960941|Mus musculus domesticus DNA, BAC clone: B6Ng01-170C12, 5' end.DH960942|Mus musculus domesticus DNA, BAC clone: B6Ng01-170C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,685,746 - 36,686,427)(36,617,346 - 36,618,363)
sequence
gaattcattcttatttctggattttttttttttttattctctttgaagta
atcatctgagtcacttcctgaggttccaaggtcagtggaaattttacctt
taatggagttgaatgtaatacttggaggacattacctttccattagccca
gatggagaagacttgccttgtttttctttactactcctggagatgtgttt
tcctttcttttgtgtgaatgacagtgctcgctgagaaatcaagatcaacc
atcagttttatgccttctacattgatgtgactttttttttccttcagtcc
ttccctggaaagaaaagaagtctaataagtgagtcatgcagctttcacaa
tctctactcatagtaggttgatgacatccgtatatttatttatttatttt
ttttttttttataagattcctctgtgtgtgtgtctctgtaaccctctctt
tcactttctcactcttttcttttctttttttttttttttttccatttttt
attaggtatttagctcatttacatttccaatgctataccaaaagtccccc
ttacccacccacccccactcccctacccacccactccccccctttggccc
tggcgttcccctgtaccggggcacacaaagtctgcgtgtccaatgggcct
ctctttccagtgatggccgactaggccatctttttgaacatatgcagcta
gagtcaagagctcagggggtactg
gaattccaaaggttgttattacaatgagaaattgagaaactttgcagttt
tccctccctctactcctttcaattctttctacctccacttccatctggat
ccactccctttatgtctttcatttgaaaagaagaggtttattttttttaa
tttttactgagtatttatttcatttacatttccaatgctatcccaaaagt
cccccacacgctcccccacccctcccccacccacccactcccacttattg
gccctggagttcccctgtactgaggcatataaagtttgcgcgaccaacgg
gcctcactttccaatgatggccaactaggccatcgataacaagacatcac
aaagtaaataagataaaataaaaaaaaaaaaaaacttcgtatcaaaattg
gacacagaaagccaacagaaggaaaagatgacaagagcaggcacaaatat
cagagagtcactcattcacacatacaagattttcataaaaatactaacct
gaaagctataacacatatttgaaggccttgagaagacacatagaggcctt
ttgctttttccttcagtctctgtgaactcatatgagttttgctcctgtga
gttagagggtcttgttatcctgatgtcctttatcctctctggctatgctc
ttaactgcaggattctctgagccttaagggaagggatttgatggagacat
cctttttagaactgtgagtttcatctctacaggacagtagatatcttttc
ttgctttcttctctgagtaggagttagaattaactccacttaatcactcc
tttgatacatggctatagcaaaatgagtgtatctcactgtgcatggcact
atccatgttttgtacacaaaaagtttgagggcatactaattttgagtctt
tataggttatgtcattaaatccctgcttcaaaaaattaaaaggtgggagg
gtaagagaagcagcttgtcagttaaaggcattttgctccagcatgaggat
gaggatttaaggctcaacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_36685746_36686427
seq2: B6Ng01-170C12.b_47_728 (reverse)

seq1  AAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCA  50

seq1  GACTTTGTGTGCCCCGGTACAGGGGAACGCCAGGGCCAAAGGGGGGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGTGTGCCCCGGTACAGGGGAACGCCAGGGCCAAAGGGGGGGAGT  100

seq1  GGGTGGGTAGGGGAGTGGGGGTGGGTGGGTAAGGGGGACTTTTGGTATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGTAGGGGAGTGGGGGTGGGTGGGTAAGGGGGACTTTTGGTATAG  150

seq1  CATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAAA  200

seq1  AAAAAAAAGAAAAGAAAAGAGTGAGAAAGTGAAAGAGAGGGTTACAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAAAAGAAAAGAGTGAGAAAGTGAAAGAGAGGGTTACAGAGA  250

seq1  CACACACACAGAGGAATCTTATAAAAAAAAAAAAAATAAATAAATAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAGAGGAATCTTATAAAAAAAAAAAAAATAAATAAATAAATA  300

seq1  TACGGATGTCATCAACCTACTATGAGTAGAGATTGTGAAAGCTGCATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGATGTCATCAACCTACTATGAGTAGAGATTGTGAAAGCTGCATGAC  350

seq1  TCACTTATTAGACTTCTTTTCTTTCCAGGGAAGGACTGAAGGAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTATTAGACTTCTTTTCTTTCCAGGGAAGGACTGAAGGAAAAAAAA  400

seq1  AGTCACATCAATGTAGAAGGCATAAAACTGATGGTTGATCTTGATTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATCAATGTAGAAGGCATAAAACTGATGGTTGATCTTGATTTCTC  450

seq1  AGCGAGCACTGTCATTCACACAAAAGAAAGGAAAACACATCTCCAGGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGCACTGTCATTCACACAAAAGAAAGGAAAACACATCTCCAGGAGT  500

seq1  AGTAAAGAAAAACAAGGCAAGTCTTCTCCATCTGGGCTAATGGAAAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAAAAACAAGGCAAGTCTTCTCCATCTGGGCTAATGGAAAGGTA  550

seq1  ATGTCCTCCAAGTATTACATTCAACTCCATTAAAGGTAAAATTTCCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTCCAAGTATTACATTCAACTCCATTAAAGGTAAAATTTCCACTG  600

seq1  ACCTTGGAACCTCAGGAAGTGACTCAGATGATTACTTCAAAGAGAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGAACCTCAGGAAGTGACTCAGATGATTACTTCAAAGAGAATAAA  650

seq1  AAAAAAAAAAATCCAGAAATAAGAATGAATTC  682
      ||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAATCCAGAAATAAGAATGAATTC  682

seq1: chr4_36617346_36618363
seq2: B6Ng01-170C12.g_68_1088

seq1  GAATTCCAAAGGTTGTTATTACAATGAGAAATTGAGAAACTTTGCAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGGTTGTTATTACAATGAGAAATTGAGAAACTTTGCAGTTT  50

seq1  TCCCTCCCTCTACTCCTTTCAATTCTTTCTACCTCCACTTCCATCTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCTACTCCTTTCAATTCTTTCTACCTCCACTTCCATCTGGAT  100

seq1  CCACTCCCTTTATGTCTTTCATTTGAAAAGAAGAGGTTTATTTTTTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCCTTTATGTCTTTCATTTGAAAAGAAGAGGTTTATTTTTTTTAA  150

seq1  TTTTTACTGAGTATTTATTTCATTTACATTTCCAATGCTATCCCAAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTGAGTATTTATTTCATTTACATTTCCAATGCTATCCCAAAAGT  200

seq1  CCCCCACACGCTCCCCCACCCCTCCCCCACCCACCCACTCCCACTTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACACGCTCCCCCACCCCTCCCCCACCCACCCACTCCCACTTATTG  250

seq1  GCCCTGGAGTTCCCCTGTACTGAGGCATATAAAGTTTGCGCGACCAACGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGAGTTCCCCTGTACTGAGGCATATAAAGTTTGCGCGACCAACGG  300

seq1  GCCTCACTTTCCAATGATGGCCAACTAGGCCATCGATAACAAGACATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACTTTCCAATGATGGCCAACTAGGCCATCGATAACAAGACATCAC  350

seq1  AAAGTAAATAAGATAAAATAAAAAAAAAAAAAAACTTCGTATCAAAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAATAAGATAAAATAAAAAAAAAAAAAAACTTCGTATCAAAATTG  400

seq1  GACACAGAAAGCCAACAGAAGGAAAAGATGACAAGAGCAGGCACAAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGAAAGCCAACAGAAGGAAAAGATGACAAGAGCAGGCACAAATAT  450

seq1  CAGAGAGTCACTCATTCACACATACAAGATTTTCATAAAAATACTAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGTCACTCATTCACACATACAAGATTTTCATAAAAATACTAACCT  500

seq1  GAAAGCTATAACACATATTTGAAGGCCTTGAGAAGACACATAGAGGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTATAACACATATTTGAAGGCCTTGAGAAGACACATAGAGGCCTT  550

seq1  TTGCTTTTTCCTTCAGTCTCTGTGAACTCATATGAGTTTTGCTCCTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTTCCTTCAGTCTCTGTGAACTCATATGAGTTTTGCTCCTGTGA  600

seq1  GTTAGAGGGTCTTGTTATCCTGATGTCCTTTATCCTCTCTGGCTATGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGGGTCTTGTTATCCTGATGTCCTTTATCCTCTCTGGCTATGCTC  650

seq1  TTAACTGCAGGATTCTCTGAGCCTTAAGGGAAGGGATTTGATGGAGACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGCAGGATTCTCTGAGCCTTAAGGGAAGGGATTTGATGGAGACAT  700

seq1  CCTTTTTAGAACTGTGAGTTTCATCTCTACAGGACAGTAGATATC-TTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTTTTTAGAACTGTGAGTTTCATCTCTACAGGACAGTAGATATCTTTTC  750

seq1  TTGCTTTCTTCTCTGAGTAGGAGTTAGAATTAACTCCACTTAATCACTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCTTCTCTGAGTAGGAGTTAGAATTAACTCCACTTAATCACTCC  800

seq1  TTTGATACATGGCTATAGCAAAATGAGTGTATCTCACTGTGCATGGCACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATACATGGCTATAGCAAAATGAGTGTATCTCACTGTGCATGGCACT  850

seq1  ATCCATGTTTTGTACACAAAAAG-TTGAGGCAATACTAAGTTCTGAGTCT  898
      ||||||||||||||||||||||| ||||||  ||||||| || |||||||
seq2  ATCCATGTTTTGTACACAAAAAGTTTGAGGGCATACTAA-TTTTGAGTCT  899

seq1  TTATAGGTTATGTCATTAAAT-CCTGCTTCCAAAAATTAAAAGTGGGAAG  947
      ||||||||||||||||||||| |||||||| ||||||||||||  || ||
seq2  TTATAGGTTATGTCATTAAATCCCTGCTTCAAAAAATTAAAAGGTGGGAG  949

seq1  GGTTAGAGAAGCAGCTTGTCAGTTAAAGGCA-TTTGCTTCAGCATGAGGA  996
      ||| ||||||||||||||||||||||||||| |||||| |||||||||||
seq2  GGTAAGAGAAGCAGCTTGTCAGTTAAAGGCATTTTGCTCCAGCATGAGGA  999

seq1  TGAGGATTTAAAGCTCAGCATT  1018
      ||||||||||| ||||| ||||
seq2  TGAGGATTTAAGGCTCAACATT  1021