BAC Information

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BAC

Clone NameB6Ng01-170E01
Chromosome4 (Build37)
Map Location 73,710,487 - 73,811,424
singlet/doubletdoublet
Overlap geneFrmd3
Upstream geneLOC100039698, OTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik
Downstream geneLOC100039774, Jmjd2c, LOC100040258, LOC100039814, LOC636847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170E01.bB6Ng01-170E01.g
ACCDH961013DH961014
length1,115784
definitionDH961013|Mus musculus domesticus DNA, BAC clone: B6Ng01-170E01, 5' end.DH961014|Mus musculus domesticus DNA, BAC clone: B6Ng01-170E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,710,487 - 73,711,611)(73,810,641 - 73,811,424)
sequence
gaattcaattcagttctgagcaattcagttccgagagttaaggtcagttc
agttgagtacaattcagagcagaagagttgagttcagaggtggtctttct
aagcagagcaatgcaatcagaagtcagggaagacagtcagcttggagagg
agcttgtgctagaacagctgagttgaatcagacaaccagagttcagaaag
atctaggaagagtgagattattcagcaataagtctcagaggctgaaacat
tctaagccaacattattagcagatggaaggtacagaagctagaagcttct
aggcttagatcctagcaataatgagatggaaaccctatgggtgcaggcct
aggtacgtagtatcacagcttgggcccagctctcatcagtataatcccat
catctgagaaaataaaccaacgtttgtttccactattgcctaagcatctg
cctctgaaccactgggattacagataaacccactatggctaacaaacatc
tttaaaactaccagaaaacagggaataacttaccaaacagactgggtaat
agaagttcagagaaactacatggtactttccttctttcaaaatgattatc
aaagaatccaactggaatattattgccatgttagaatgggctagaaagga
gagctaattcatcggcagcaattctatgatatgtgagatgtccaatcaca
tattattggccattgagctcttatttaccacccttggactacataaaagg
attttgtttagcattttggtggaagggcaacaaaattaggcctttcatta
gcaaaagtttcccatttctctgctcaaacacatagtcattttatacaaag
actaattaaatggcatttcaataccacagataaaattctgccccacttaa
atttgtcttttaagataccacaaaccctggcattggccttggaaaccaat
gagcctctccacctcctgttgtgtatggcaggtattcacaatattgagca
aatatgtgtgtaagatagaaaagagagaaaacagattgaagcatgcattg
aggagagagagattctgctgatgtggagtgcctctgctgccacctagcca
agtgattttctgtat
gaattctaagtaagtagaaattaaatggaagtgtcactgattactacttc
tctgaccaatgtgctgccttggagatgttaaggactttcagactagcatc
ttggacaaaacacatgtctaaggaaaatgattaaatctcagatcagttaa
atagaaggaacaaatatatcattaaggctattttctatccaaagtttctg
aaaaagtgaaaatggtatattttattatccccgtcttcatttctgctatg
ccagacttttacagcttatgaaaagggagagtgttctaaattgtcttctg
atctttgaaaagtctgccacacatttagatattgcatcaaggcactgtca
atcaatagtttttaccctctccaactctgcaggtttctcctattctttaa
agctggactcacctcaggactacccaaaagcagagatgaatcataagttg
tttatatctgcatcagttctgaagagtttagctatactcagcttttcggg
agactggtgttatcaggatgcccttgaatgtctggcttagcctactttct
gagaggacacaactgtctcctccctataactaccaaaataaagtagagta
ccactgaactcacccaagattcttgaaaatggaggaacctcagcaaatct
gaacataaaggaaatgcatttgggttccaaagttgaagaaggaaaggcag
gtgacaactatcctgtgtgaaattccctaaataatttatcagaagtggag
gcattatggggaagtatgggggtatgaaagaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_73710487_73711611
seq2: B6Ng01-170E01.b_45_1159

seq1  GAATTCAATTCAGTTCTGAGCAATTCAGTTCCGAGAGTTAAGGTCAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCAGTTCTGAGCAATTCAGTTCCGAGAGTTAAGGTCAGTTC  50

seq1  AGTTGAGTACAATTCAGAGCAGAAGAGTTGAGTTCAGAGGTGGTCTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGTACAATTCAGAGCAGAAGAGTTGAGTTCAGAGGTGGTCTTTCT  100

seq1  AAGCAGAGCAATGCAATCAGAAGTCAGGGAAGACAGTCAGCTTGGAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGCAATGCAATCAGAAGTCAGGGAAGACAGTCAGCTTGGAGAGG  150

seq1  AGCTTGTGCTAGAACAGCTGAGTTGAATCAGACAACCAGAGTTCAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTGCTAGAACAGCTGAGTTGAATCAGACAACCAGAGTTCAGAAAG  200

seq1  ATCTAGGAAGAGTGAGATTATTCAGCAATAAGTCTCAGAGGCTGAAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGAAGAGTGAGATTATTCAGCAATAAGTCTCAGAGGCTGAAACAT  250

seq1  TCTAAGCCAACATTATTAGCAGATGGAAGGTACAGAAGCTAGAAGCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCCAACATTATTAGCAGATGGAAGGTACAGAAGCTAGAAGCTTCT  300

seq1  AGGCTTAGATCCTAGCAATAATGAGATGGAAACCCTATGGGTGCAGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTAGATCCTAGCAATAATGAGATGGAAACCCTATGGGTGCAGGCCT  350

seq1  AGGTACGTAGTATCACAGCTTGGGCCCAGCTCTCATCAGTATAATCCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACGTAGTATCACAGCTTGGGCCCAGCTCTCATCAGTATAATCCCAT  400

seq1  CATCTGAGAAAATAAACCAACGTTTGTTTCCACTATTGCCTAAGCATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAGAAAATAAACCAACGTTTGTTTCCACTATTGCCTAAGCATCTG  450

seq1  CCTCTGAACCACTGGGATTACAGATAAACCCACTATGGCTAACAAACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAACCACTGGGATTACAGATAAACCCACTATGGCTAACAAACATC  500

seq1  TTTAAAACTACCAGAAAACAGGGAATAACTTACCAAACAGACTGGGTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACTACCAGAAAACAGGGAATAACTTACCAAACAGACTGGGTAAT  550

seq1  AGAAGTTCAGAGAAACTACATGGTACTTTCCTTCTTTCAAAATGATTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTCAGAGAAACTACATGGTACTTTCCTTCTTTCAAAATGATTATC  600

seq1  AAAGAATCCAACTGGAATATTATTGCCATGTTAGAATGGGCTAGAAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATCCAACTGGAATATTATTGCCATGTTAGAATGGGCTAGAAAGGA  650

seq1  GAGCTAATTCATCGGCAGCAATTCTATGATATGTGAGATGTCCAATCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAATTCATCGGCAGCAATTCTATGATATGTGAGATGTCCAATCACA  700

seq1  TATTATTGGCCATTGAGCTCTTATTTACCACCCTTGGACTACATAAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGGCCATTGAGCTCTTATTTACCACCCTTGGACTACATAAAAGG  750

seq1  ATTTTGTTTAGCATTTTGGTGGAAGGGCAACAAAATTAGGCCTTTCATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTTAGCATTTTGGTGGAAGGGCAACAAAATTAGGCCTTTCATTA  800

seq1  GCAAAAGTTTCCCATTTCTCTGCTCAAACACATAGTCATTTTATACAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGTTTCCCATTTCTCTGCTCAAACACATAGTCATTTTATACAAAG  850

seq1  ACTAATTAAATGGCATTTCAATACCACAGATAAAATTCTGCCCCACTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTAAATGGCATTTCAATACCACAGATAAAATTCTGCCCCACTTAA  900

seq1  ATTTGTCTTTTAAGATACCACAAATTGGTGGCATTGGCCTTGGAAACCAA  950
      ||||||||||||||||||||||||    ||||||||||||||||||||||
seq2  ATTTGTCTTTTAAGATACCACAAA-CCCTGGCATTGGCCTTGGAAACCAA  949

seq1  TGAGGCCTCTCCACCTCCTGGTGTGTATGGCAGGGTATCACCAATA-TGA  999
      ||| |||||||||||||||| ||||||||||| |||||   ||||| |||
seq2  TGA-GCCTCTCCACCTCCTGTTGTGTATGGCA-GGTATTCACAATATTGA  997

seq1  GCAAATATGTGGTGTAAAGATAGAAAAGAGAGAAAAACAGAGTGAAGCAT  1049
      |||||||||| |||| |||||||||||||||| |||||||| ||||||||
seq2  GCAAATATGT-GTGT-AAGATAGAAAAGAGAG-AAAACAGATTGAAGCAT  1044

seq1  GCATTGAGGAGAGAAGGAGGATCTGGCTGATGT-GAGTGGCCTCTGCTGC  1098
      ||||||||||||||  |||  ||| |||||||| |||| |||||||||||
seq2  GCATTGAGGAGAGA--GAGATTCT-GCTGATGTGGAGT-GCCTCTGCTGC  1090

seq1  CACCTTAGGCCAAGGTGA-TATCTGTAT  1125
      |||||   ||||| |||| | |||||||
seq2  CACCT--AGCCAA-GTGATTTTCTGTAT  1115

seq1: chr4_73810641_73811424
seq2: B6Ng01-170E01.g_66_849 (reverse)

seq1  CCTTCTTTCATACCCCCATACTTCCCCATAATGCCTCCACTTCTGATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTCATACCCCCATACTTCCCCATAATGCCTCCACTTCTGATAAA  50

seq1  TTATTTAGGGAATTTCACACAGGATAGTTGTCACCTGCCTTTCCTTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGGGAATTTCACACAGGATAGTTGTCACCTGCCTTTCCTTCTTC  100

seq1  AACTTTGGAACCCAAATGCATTTCCTTTATGTTCAGATTTGCTGAGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGGAACCCAAATGCATTTCCTTTATGTTCAGATTTGCTGAGGTTC  150

seq1  CTCCATTTTCAAGAATCTTGGGTGAGTTCAGTGGTACTCTACTTTATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTTCAAGAATCTTGGGTGAGTTCAGTGGTACTCTACTTTATTTT  200

seq1  GGTAGTTATAGGGAGGAGACAGTTGTGTCCTCTCAGAAAGTAGGCTAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTATAGGGAGGAGACAGTTGTGTCCTCTCAGAAAGTAGGCTAAGC  250

seq1  CAGACATTCAAGGGCATCCTGATAACACCAGTCTCCCGAAAAGCTGAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATTCAAGGGCATCCTGATAACACCAGTCTCCCGAAAAGCTGAGTA  300

seq1  TAGCTAAACTCTTCAGAACTGATGCAGATATAAACAACTTATGATTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAAACTCTTCAGAACTGATGCAGATATAAACAACTTATGATTCATC  350

seq1  TCTGCTTTTGGGTAGTCCTGAGGTGAGTCCAGCTTTAAAGAATAGGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTTGGGTAGTCCTGAGGTGAGTCCAGCTTTAAAGAATAGGAGAA  400

seq1  ACCTGCAGAGTTGGAGAGGGTAAAAACTATTGATTGACAGTGCCTTGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAGAGTTGGAGAGGGTAAAAACTATTGATTGACAGTGCCTTGATG  450

seq1  CAATATCTAAATGTGTGGCAGACTTTTCAAAGATCAGAAGACAATTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCTAAATGTGTGGCAGACTTTTCAAAGATCAGAAGACAATTTAGA  500

seq1  ACACTCTCCCTTTTCATAAGCTGTAAAAGTCTGGCATAGCAGAAATGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTCCCTTTTCATAAGCTGTAAAAGTCTGGCATAGCAGAAATGAAG  550

seq1  ACGGGGATAATAAAATATACCATTTTCACTTTTTCAGAAACTTTGGATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGATAATAAAATATACCATTTTCACTTTTTCAGAAACTTTGGATAG  600

seq1  AAAATAGCCTTAATGATATATTTGTTCCTTCTATTTAACTGATCTGAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCCTTAATGATATATTTGTTCCTTCTATTTAACTGATCTGAGAT  650

seq1  TTAATCATTTTCCTTAGACATGTGTTTTGTCCAAGATGCTAGTCTGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCATTTTCCTTAGACATGTGTTTTGTCCAAGATGCTAGTCTGAAAG  700

seq1  TCCTTAACATCTCCAAGGCAGCACATTGGTCAGAGAAGTAGTAATCAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAACATCTCCAAGGCAGCACATTGGTCAGAGAAGTAGTAATCAGTG  750

seq1  ACACTTCCATTTAATTTCTACTTACTTAGAATTC  784
      ||||||||||||||||||||||||||||||||||
seq2  ACACTTCCATTTAATTTCTACTTACTTAGAATTC  784