BAC Information

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BAC

Clone NameB6Ng01-171C08
Chromosome4 (Build37)
Map Location 89,735,496 - 89,736,647
singlet/doubletsinglet
Overlap genenone
Upstream geneMtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
Downstream geneZfp352, LOC619842, LOC435792, Ppia-ps4_804.1, LOC664840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171C08.bB6Ng01-171C08.g
ACCGA000105GA000106
length1,1791,129
definitionB6Ng01-171C08.b B6Ng01-171C08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagttctgtatccaattttaatagggttatttgattct
ctggagtttagtttcttgagttctttgtttatattggatattagctctct
atcagatgtaggattggtaaagatctttttctaatctgttggttgccatt
ttgtcctattgacagtgtcctttgctatacagaagctttgcagttttatg
aggtcccatttgttgattcttgatctcagagcataagccattggtgttct
attcaggaaaaatttccttgtgccatgtgtttaaggctcttccccacatt
tcttctattagttcagtgcatctggttttatgtggaggtccttgatccaa
ctgaagaattccaaatggccaagaagcacctaaagaaatgtttaacatcc
ttagtcatcagggaaatgcaaatcaaaacaaccctgagattccacctcac
accagtcagaatgactaagatcaaaacctcaggtaagagtagatgctggt
gaggatgtggagaaagaagaacactcctccatcattggctggattgcaag
gtagaacaaccactctggaaatcagtctggtggttcctcagaaaattacc
tgaggatttagctttaccactcctgggcatatacccaaaagattttccaa
catatagtaagaacacatgctccactatgttcatagcagccttataatag
gcagaagctgaaaagaacccagatatccttcaacagaggaattgctacag
aaaatgtgatacatttacacaatggagtactactcagctgttaacaatga
actcatgaaattctgaggtaaatggatggaactagaaaatatcatcctga
atgaggtatcctaataacaaaagaacacacatggtatgcattcactgaaa
agtggatattagcccaaatactcagatacccaagatacaattcacagacc
acatgaagctcagaagaggaagtccaagtgtgatgcttaggtgcttctag
aaaggggaagaaatcactcactggagcaatatgggaggacaagtgtagaa
ctgaagaaaaagcatcctaggactgtctactggggaatcattccatatgc
agtcaccaaaccagtcactattggatgcagaagaattcgctgacagacct
cacatactggttttttttgagagagaatc
gaattccatgaaggttcactaaaactctaaaaactcaaagagatttgtac
tagagtggttcaaaatgcctgttgattttatcagtatctttaggggcaat
agctaaaaacgaattgtgtaaaagtttattactttatttcttgcttgtta
ggaaccaattatatgacttaaatgttttaacaaccaaaaacaggtagtag
caatttatatatggcaatttaaaaacaatattctatctatctatctatct
atctatctatctatctatctatctatctatttatctatctatctatttat
ctatctatctacctatcttggattcaagcccccagcctgaatccccattt
atgtatacacccagtctatccctggtacaaacttactatttggcagagga
tggtttggaatctttgatcttcttcctctacctgttaagtactaagatta
caggtgtactaaggactgatcccagcacttcatatatgcttggcaagaac
tctgccaatcaagttatacacctagtcacatttgttcacaaattatgttg
ttaatatgctaacaaagatataatgatctcctccacatattaaaatgcat
catatgatttgcttgatagtttatctgttactataaaacatgttcttgac
attttattactacatgagtttaaatagaaatatacatttgtatcacatag
gcatttgtatcacataatttctcaaggcattgaatcaaaactttccaatg
ttttatctcttggtattgaaaaacggtctgaagttatcacatttttctta
acaaacatatctcttagagttttaggtctttctactatcgaggctctgaa
attatcttactcttcaaaggagaaaaattcattacccatgtcattattct
gaggattattgggtaatatttgagcagagtgagcccttacattagtaatt
acaaatatgtctagaacaaaagaccaatactgaaatttcattttacataa
acacagcaggtgctctgcatgcaggagctacctctgagaagcagtataga
aatagataatcagttagatatatacaagcagagatgctcattataagaac
actgttgctatccgagacttgggttcaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_89735496_89736647
seq2: B6Ng01-171C08.g_69_1197 (reverse)

seq1  GTTGAACCCAGGTCTTCTTGGATAGCAACAGTGTTCTTATATAATGAGCC  50
      |||||||||| |   ||| ||||||||||||||||||  |||||||||| 
seq2  GTTGAACCCAAG---TCTCGGATAGCAACAGTGTTCT--TATAATGAGC-  44

seq1  ATTTCTCTGGCCCTTGGTATTATTATTCTTACTGATTATCTATTTTCTAT  100
         ||||||   ||||    |||   ||| |||||||||||| |||||||
seq2  --ATCTCTG---CTTG----TATATATCTAACTGATTATCTA-TTTCTAT  84

seq1  ACTGCCTCCTTCAGA-GTAGCTCCTTGGCAATGGCAGAGCACCTGCTGTG  149
      ||||| ||  ||||| |||||||||  |||   |||||||||||||||||
seq2  ACTGCTTC--TCAGAGGTAGCTCCT--GCA--TGCAGAGCACCTGCTGTG  128

seq1  TTTATGTAAAAATGAAA-TTCAGTATTGGTCTTTTGTTCTAGACATATTT  198
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTATGT-AAAATGAAATTTCAGTATTGGTCTTTTGTTCTAGACATATTT  177

seq1  GTAATTACTATTGTAA-GGCTCACTCTGCTCAAATATTACC--ATAATCC  245
      |||||||||| ||||| ||||||||||||||||||||||||  |||||||
seq2  GTAATTACTAATGTAAGGGCTCACTCTGCTCAAATATTACCCAATAATCC  227

seq1  TCAG-ATAATGACATGGGTAATG-ATTTTTCTCCTTTGAAGAGTAAGAT-  292
      |||| |||||||||||||||||| ||||||||||||||||||||||||| 
seq2  TCAGAATAATGACATGGGTAATGAATTTTTCTCCTTTGAAGAGTAAGATA  277

seq1  ATTTCAGAGCCTCGATAGTAGAAAGACCTAAAACTCTAAGAGATATGTTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGAGCCTCGATAGTAGAAAGACCTAAAACTCTAAGAGATATGTTT  327

seq1  GTTAAGAAAAATGTGATAACTTCAGACCGTTTTTCAATACCAAGAGATAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAAAAATGTGATAACTTCAGACCGTTTTTCAATACCAAGAGATAA  377

seq1  AACATTGGAAAGTTTTGATTCAATGCCTTGAGAAATTATGTGATACAAAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGGAAAGTTTTGATTCAATGCCTTGAGAAATTATGTGATACAAAT  427

seq1  GCCTATGTGATACAAATGTATATTTCTATTTAAACTCATGTAGTAATAAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGTGATACAAATGTATATTTCTATTTAAACTCATGTAGTAATAAA  477

seq1  ATGTCAAGAACATGTTTTATAGTAACAGATAAACTATCAAGCAAATCATA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAGAACATGTTTTATAGTAACAGATAAACTATCAAGCAAATCATA  527

seq1  TGATGCATTTTAATATGTGGAGGAGATCATTATATCTTTGTTAGCATATT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCATTTTAATATGTGGAGGAGATCATTATATCTTTGTTAGCATATT  577

seq1  AACAACATAATTTGTGAACAAATGTGACTAGGTGTATAACTTGATTGGCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACATAATTTGTGAACAAATGTGACTAGGTGTATAACTTGATTGGCA  627

seq1  GAGTTCTTGCCAAGCATATATGAAGTGCTGGGATCAGTCCTTAGTACACC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTTGCCAAGCATATATGAAGTGCTGGGATCAGTCCTTAGTACACC  677

seq1  TGTAATCTTAGTACTTAACAGGTAGAGGAAGAAGATCAAAGATTCCAAAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCTTAGTACTTAACAGGTAGAGGAAGAAGATCAAAGATTCCAAAC  727

seq1  CATCCTCTGCCAAATAGTAAGTTTGTACCAGGGATAGACTGGGTGTATAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTGCCAAATAGTAAGTTTGTACCAGGGATAGACTGGGTGTATAC  777

seq1  ATAAATGGGGATTCAGGCTGGGGGCTTGAATCCAAGATAGGTAGATAGAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGGGGATTCAGGCTGGGGGCTTGAATCCAAGATAGGTAGATAGAT  827

seq1  AGATAAATAGATAGATAGATAAATAGATAGATAGATAGATAGATAGATAG  892
      ||||||||||||||||||||||        ||||||||||||||||||||
seq2  AGATAAATAGATAGATAGATAA--------ATAGATAGATAGATAGATAG  869

seq1  ATAGATAGATAGATAGATAGATAGATAGAATATTGTTTTTAAATTGCCAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATAGATAGATAGATAGATAGAATATTGTTTTTAAATTGCCAT  919

seq1  ATATAAATTGCTACTACCTGTTTTTGGTTGTTAAAACATTTAAGTCATAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATTGCTACTACCTGTTTTTGGTTGTTAAAACATTTAAGTCATAT  969

seq1  AATTGGTTCCTAACAAGCAAGAAATAAAGTAATAAACTTTTACACAATTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTTCCTAACAAGCAAGAAATAAAGTAATAAACTTTTACACAATTC  1019

seq1  GTTTTTAGCTATTGCCCCTAAAGATACTGATAAAATCAACAGGCATTTTG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGCTATTGCCCCTAAAGATACTGATAAAATCAACAGGCATTTTG  1069

seq1  AACCACTCTAGTACAAATCTCTTTGAGTTTTTAGAGTTTTAGTGAACCTT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTCTAGTACAAATCTCTTTGAGTTTTTAGAGTTTTAGTGAACCTT  1119

seq1  CATGGAATTC  1152
      ||||||||||
seq2  CATGGAATTC  1129