BAC Information

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BAC

Clone NameB6Ng01-171I11
Chromosome4 (Build37)
Map Location 93,703,133 - 93,875,691
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171I11.bB6Ng01-171I11.g
ACCGA000388GA000389
length903843
definitionB6Ng01-171I11.b B6Ng01-171I11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,874,789 - 93,875,691)(93,703,133 - 93,703,741)
sequence
gaattcttctagacagggaagtgtttttcattgctgtttggatccacaga
tttctagtgtacacttggtgagaggatccttttgttaattgagtgcctcc
agatccacacctgatagattgacagcaatcacaagtgtgttaagctggtt
agactctattttaaatagctatcaaaaaggttgtgattagaatagtaaca
ttgaagagcttgtagctttcctgccctaggaccaacactgcccacaccta
cttgaacatgacatgaggaaaaaacaagttagaaggcttggacttgcttg
ttgctggtttgaaacctcagctgttgcatggatgctcatgtctgaccccc
ctgatcactaaatgggaagcttggtctcaatgctttcctgaccactgtcc
tctccagaaaggtgacacaacagtttagttagtggcattcaaaggagtaa
gttgatctcttttatcaaacatttagtactgccatgttatacacaaatta
actagctgaatcatttatttcattttttaaaatctcaatagaggtaacta
catagaaatatatactaatcccattgtccatctgacttagaatagaatat
tgcacaagttaatttaaaaaaatctgtcctgtatgttaaaaactcatatt
caagttattttttttttatcattttttttattaggtatttagctcattta
catttccaatgctataccaaaagtcccccttactcacccacccccactcc
cctacccacccactcccccccctttggccctggcgttcccctgtaccggg
gcacacaaagtctgcgtgtcccaatgggcctctcttcaattgatggccaa
ctaggccatctttttgattcattgcagctaagtccagagttcaggggtac
tgg

gaattctttatttgtatgaaacatcacactttatcttccaagagtacatt
tactgtgtgacaattaagaccttttcaaggtctgtgatgttatgatatct
taagactcctgcctctgtggcatggtggggcatcttttgggtatattccc
aagggtggtatagctaggtcttcaggtaaatctacttccaattttctgag
gaacctccagattgatttccagagtggttgtaccagtttgcaatgccaac
agcaatggaggagtgttcctctttctccatatcctctccagcatgtgttg
tcacctgaggttttgatcttagccattctgactggtgtaaggtggaatct
cagggtcattttgatttgcatttttctgatcactaaggacttggaacatt
tctttaggtgtttctcaaccattggagattcctcagttgtgaattcttcg
tttatttctgtaccccattttttgattgggttgtttgtttgtttgttttt
gttttgttttttggtgattaacttcttgagttctttatatattttggata
ttagccctctatcagatgtggggtcatggaagatatttttttcccaatca
gtaggttgccaatttgtcttatcgactgtgtcctttatcttacagaagct
ttccttatttgtgatagccagaagctggaaacaacctagatgtacaacga
tgtatttacacaaaagaatactacgcagctattaagagtaagtatatcct
gacttttgcaggctaatggatagaactagaaatatcatccctgagtgagg
taactcagacccaaaaagacatgcatggtatgcactcactaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_93874789_93875691
seq2: B6Ng01-171I11.b_42_944 (reverse)

seq1  CCAGTACCCCTGAGCTCTTGACTCTAGCTGCATATGTATC-AAAAGATGG  49
      ||||||||||||| |||| |||| |||||||| ||| ||| |||||||||
seq2  CCAGTACCCCTGAACTCTGGACT-TAGCTGCA-ATGAATCAAAAAGATGG  48

seq1  CCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT-GGACACGCAGACTTT  98
      |||||| |||||||| | | |||||||||||||| |||||||||||||||
seq2  CCTAGTTGGCCATCAATTG-AAGAGAGGCCCATTGGGACACGCAGACTTT  97

seq1  GTGTGCCCCGGTACAGGGGAACGCCAGGGCCAAA-GGGGGGGAGTGGGTG  147
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTGTGCCCCGGTACAGGGGAACGCCAGGGCCAAAGGGGGGGGAGTGGGTG  147

seq1  GGTAGGGGAGTGGGGGTGGGTGGGTAAGGGGGACTTTTGGTATAGCATTG  197
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGTAGGGGAGTGGGGGTGGGTGAGTAAGGGGGACTTTTGGTATAGCATTG  197

seq1  GAAATGTAAATGAGCTAAATACCTAATAAAAAAAATGATAAAAAAAAAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTAAATGAGCTAAATACCTAATAAAAAAAATGATAAAAAAAAAAT  247

seq1  AACTTGAATATGAGTTTTTAACATACAGGACAGATTTTTTTAAATTAACT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAATATGAGTTTTTAACATACAGGACAGATTTTTTTAAATTAACT  297

seq1  TGTGCAATATTCTATTCTAAGTCAGATGGACAATGGGATTAGTATATATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAATATTCTATTCTAAGTCAGATGGACAATGGGATTAGTATATATT  347

seq1  TCTATGTAGTTACCTCTATTGAGATTTTAAAAAATGAAATAAATGATTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTAGTTACCTCTATTGAGATTTTAAAAAATGAAATAAATGATTCA  397

seq1  GCTAGTTAATTTGTGTATAACATGGCAGTACTAAATGTTTGATAAAAGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTAATTTGTGTATAACATGGCAGTACTAAATGTTTGATAAAAGAG  447

seq1  ATCAACTTACTCCTTTGAATGCCACTAACTAAACTGTTGTGTCACCTTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTTACTCCTTTGAATGCCACTAACTAAACTGTTGTGTCACCTTTC  497

seq1  TGGAGAGGACAGTGGTCAGGAAAGCATTGAGACCAAGCTTCCCATTTAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGACAGTGGTCAGGAAAGCATTGAGACCAAGCTTCCCATTTAGT  547

seq1  GATCAGGGGGGTCAGACATGAGCATCCATGCAACAGCTGAGGTTTCAAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGGGGGTCAGACATGAGCATCCATGCAACAGCTGAGGTTTCAAAC  597

seq1  CAGCAACAAGCAAGTCCAAGCCTTCTAACTTGTTTTTTCCTCATGTCATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACAAGCAAGTCCAAGCCTTCTAACTTGTTTTTTCCTCATGTCATG  647

seq1  TTCAAGTAGGTGTGGGCAGTGTTGGTCCTAGGGCAGGAAAGCTACAAGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTAGGTGTGGGCAGTGTTGGTCCTAGGGCAGGAAAGCTACAAGCT  697

seq1  CTTCAATGTTACTATTCTAATCACAACCTTTTTGATAGCTATTTAAAATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATGTTACTATTCTAATCACAACCTTTTTGATAGCTATTTAAAATA  747

seq1  GAGTCTAACCAGCTTAACACACTTGTGATTGCTGTCAATCTATCAGGTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTAACCAGCTTAACACACTTGTGATTGCTGTCAATCTATCAGGTGT  797

seq1  GGATCTGGAGGCACTCAATTAACAAAAGGATCCTCTCACCAAGTGTACAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGGAGGCACTCAATTAACAAAAGGATCCTCTCACCAAGTGTACAC  847

seq1  TAGAAATCTGTGGATCCAAACAGCAATGAAAAACACTTCCCTGTCTAGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATCTGTGGATCCAAACAGCAATGAAAAACACTTCCCTGTCTAGAA  897

seq1  GAATTC  903
      ||||||
seq2  GAATTC  903


seq1: chr4_93703133_93703741
seq2: B6Ng01-171I11.g_65_673

seq1  GAATTCTTTATTTGTATGAAACATCACACTTTATCTTCCAAGAGTACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTTGTATGAAACATCACACTTTATCTTCCAAGAGTACATT  50

seq1  TACTGTGTGACAATTAAGACCTTTTCAAGGTCTGTGATGTTATGATATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGTGACAATTAAGACCTTTTCAAGGTCTGTGATGTTATGATATCT  100

seq1  TAAGACTCCTGCCTCTGTGGCATGGTGGGGCATCTTTTGGGTATATTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTCCTGCCTCTGTGGCATGGTGGGGCATCTTTTGGGTATATTCCC  150

seq1  AAGGGTGGTATAGCTAGGTCTTCAGGTAAATCTACTTCCAATTTTCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGGTATAGCTAGGTCTTCAGGTAAATCTACTTCCAATTTTCTGAG  200

seq1  GAACCTCCAGATTGATTTCCAGAGTGGTTGTACCAGTTTGCAATGCCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCCAGATTGATTTCCAGAGTGGTTGTACCAGTTTGCAATGCCAAC  250

seq1  AGCAATGGAGGAGTGTTCCTCTTTCTCCATATCCTCTCCAGCATGTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGAGGAGTGTTCCTCTTTCTCCATATCCTCTCCAGCATGTGTTG  300

seq1  TCACCTGAGGTTTTGATCTTAGCCATTCTGACTGGTGTAAGGTGGAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGAGGTTTTGATCTTAGCCATTCTGACTGGTGTAAGGTGGAATCT  350

seq1  CAGGGTCATTTTGATTTGCATTTTTCTGATCACTAAGGACTTGGAACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCATTTTGATTTGCATTTTTCTGATCACTAAGGACTTGGAACATT  400

seq1  TCTTTAGGTGTTTCTCAACCATTGGAGATTCCTCAGTTGTGAATTCTTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGGTGTTTCTCAACCATTGGAGATTCCTCAGTTGTGAATTCTTCG  450

seq1  TTTATTTCTGTACCCCATTTTTTGATTGGGTTGTTTGTTTGTTTGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTGTACCCCATTTTTTGATTGGGTTGTTTGTTTGTTTGTTTTT  500

seq1  GTTTTGTTTTTTGGTGATTAACTTCTTGAGTTCTTTATATATTTTGGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTTTGGTGATTAACTTCTTGAGTTCTTTATATATTTTGGATA  550

seq1  TTAGCCCTCTATCAGATGTGGGGTCATGGAAGATATTTTTTTCCCAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCCTCTATCAGATGTGGGGTCATGGAAGATATTTTTTTCCCAATCA  600

seq1  GTAGGTTGC  609
      |||||||||
seq2  GTAGGTTGC  609


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