BAC Information

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BAC

Clone NameB6Ng01-171K04
Chromosome4 (Build37)
Map Location 38,571,654 - 38,689,226
singlet/doubletdoublet
Overlap geneLOC665520
Upstream geneLOC277771, LOC100039448
Downstream geneLOC100039487, 1700009N14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171K04.bB6Ng01-171K04.g
ACCGA000464GA000465
length1,1021,024
definitionB6Ng01-171K04.b B6Ng01-171K04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,571,654 - 38,572,760)(38,688,189 - 38,689,226)
sequence
gaattcatcctgattgggagggaagagaggttataggtttgtaaggaatg
ggaaagaatgaatatgatcaaacaaaaaatttccagtgaactaataaaaa
tgttttaaatatatctgaaaatgtaatattcatcagcatttagaaattat
tccatatttcaacaatgcattgtagttttaattatatatatttatatata
tcattaaataaatatatatttatatatatgctatatatatatgttctttt
ataaaaagagaaaatgcatatattaaaggtttttgttgtagaagaatgct
attaatttaacttagtggtcctattaaagagcccctcttctctgaagtgg
tctctaaaatgagaacaccaaaaaatcattaataattgataatgtcttgt
ttgatagaataatgttttttttaatcattctcttagatatccataaaatt
tgacttgcaagtaatagtctccactctgtaggcttctcttaagcctattc
ataatgtagtagaatcttgacctggctgtgatggtgtctgacaaggaaca
atgtcaacaaaaggaaataatttggcagagatgaaacaaaatagatatag
actgtaactttgaatttatctcagaaatttaagttactgtattggcttgt
atttccagtatcaaaactttaaatagataccattatcgtaatgccttgaa
caatagatattagtgggtttaaagtgtttgtagtggacttgtggtaaagc
tgtgaaactgatcttgggttttaatgtgtagagataagaaattgatgata
tttttcctattacttgtctttgaacattttgaatgctatttggcaaggaa
gaatattggatctattttcataatccattatgactcaagctcattattct
gcctaaatgaaattagtactaaaggcagtaagatatccaggaaaaacata
ttaaagataagcagggtctccaaaacagatgttgagaggtcaaggggcct
atatagaattagcaaggaatagagttttgggactagttgtcagcctatat
ccactatcagatattttaagatagatgttatatttttccatttggtgcat
at

gaattcctgcctaaactgaaaaccagcctcatgtactgaacttggagcat
cttggagcatcaggacataggcagccattattagaacacctggaccacaa
cctataacatattctaataacaaacagccacagaaacacacagcccccac
cacacacacacacacacacacacacacacagagagagagagagagagaga
gagagagagagagagaggttgagagagaaagttttgtgtgtggtttacta
gataataaactaagtcagagacagaggtttgttctataatttctgttact
ctagagaacccttctaatacagcaaaaattctgggaggggacacttgcag
ggccaatatttgaaatgtaaataaatataataattaattaaaatttaaaa
gcaaataagctgggcatggtggcacatgcctttaatcccagcactgagga
ggcagaggcaggcagatttctgagttcaaggccagcctggtctacaaagt
gagttccaggacagccagggctacaaagagaaaccctgtctcgaaaaaaa
aaaaaaaaaaaaacccaaaaaaccaaaacaaacaaaaaacaacaaccaac
caaacaaccaaccaatgaagcaagggtacctactttatcctttcttattc
gaaatcagctacatttaaagaaaagaaccatgtttaaagcactaagaata
ggaaggaaggaggtaaaactaattctgatgtacagctggtatgattattc
actataaagactctatgtgtctccaagaaaactcttagacataataaaca
caagagaaaaatacatatattccaggacccattattcataccaaacctct
actctcttaagaaaactagttatcacattttatgaatgtatcaaatgaga
gaagtgaaaggcagtaaaatgaagatttgaagattttttgtaagagtaca
gagaagtatagaaaatataccatgtcctagaaagcagttctagaaaagag
ctatatatcaaataaatttgcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_38571654_38572760
seq2: B6Ng01-171K04.b_46_1147

seq1  GAATTCATCCTGATTGGGAGGGAAGAGAGGTTATAGGTTTGTAAGGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTGATTGGGAGGGAAGAGAGGTTATAGGTTTGTAAGGAATG  50

seq1  GGAAAGAATGAATATGATCAAACAAAAAATTTCCAGTGAACTAATAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAATGAATATGATCAAACAAAAAATTTCCAGTGAACTAATAAAAA  100

seq1  TGTTTTAAATATATCTGAAAATGTAATATTCATCAGCATTTAGAAATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAATATATCTGAAAATGTAATATTCATCAGCATTTAGAAATTAT  150

seq1  TCCATATTTCAACAATGCATTGTAGTTTTAATTATATATATTTATATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTTCAACAATGCATTGTAGTTTTAATTATATATATTTATATATA  200

seq1  TCATTAAATAAATATATATTTATATATATGCTATATATATATGTTCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAATAAATATATATTTATATATATGCTATATATATATGTTCTTTT  250

seq1  ATAAAAAGAGAAAATGCATATATTAAAGGTTTTTGTTGTAGAAGAATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGAGAAAATGCATATATTAAAGGTTTTTGTTGTAGAAGAATGCT  300

seq1  ATTAATTTAACTTAGTGGTCCTATTAAAGAGCCCCTCTTCTCTGAAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTAACTTAGTGGTCCTATTAAAGAGCCCCTCTTCTCTGAAGTGG  350

seq1  TCTCTAAAATGAGAACACCAAAAAATCATTAATAATTGATAATGTCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAAATGAGAACACCAAAAAATCATTAATAATTGATAATGTCTTGT  400

seq1  TTGATAGAATAATGTTTTTTTTAATCATTCTCTTAGATATCCATAAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGAATAATGTTTTTTTTAATCATTCTCTTAGATATCCATAAAATT  450

seq1  TGACTTGCAAGTAATAGTCTCCACTCTGTAGGCTTCTCTTAAGCCTATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGCAAGTAATAGTCTCCACTCTGTAGGCTTCTCTTAAGCCTATTC  500

seq1  ATAATGTAGTAGAATCTTGACCTGGCTGTGATGGTGTCTGACAAGGAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTAGTAGAATCTTGACCTGGCTGTGATGGTGTCTGACAAGGAACA  550

seq1  ATGTCAACAAAAGGAAATAATTTGGCAGAGATGAAACAAAATAGATATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAACAAAAGGAAATAATTTGGCAGAGATGAAACAAAATAGATATAG  600

seq1  ACTGTAACTTTGAATTTATCTCAGAAATTTAAGTTACTGTATTGGCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAACTTTGAATTTATCTCAGAAATTTAAGTTACTGTATTGGCTTGT  650

seq1  ATTTCCAGTATCAAAACTTTAAATAGATACCATTATCGTAATGCCTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGTATCAAAACTTTAAATAGATACCATTATCGTAATGCCTTGAA  700

seq1  CAATAGATATTAGTGGGTTTAAAGTGTTTGTAGTGGACTTGTGGTAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGATATTAGTGGGTTTAAAGTGTTTGTAGTGGACTTGTGGTAAAGC  750

seq1  TGTGAAACTGATCTTGGGTTTTAATGTGTAGAGATAAGAAATTGATGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAACTGATCTTGGGTTTTAATGTGTAGAGATAAGAAATTGATGATA  800

seq1  TTTTTCCTATTACTTGTCTTTGAACATTTTGAATGCTATTTGGCAAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTATTACTTGTCTTTGAACATTTTGAATGCTATTTGGCAAGGAA  850

seq1  GAATATTGGATCTATTTTCATAATCCATTATGACTCAAGCTCATTATTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTGGATCTATTTTCATAATCCATTATGACTCAAGCTCATTATTCT  900

seq1  GCCTAAATGAAATTAGTACT-AAGGCAGTAAGATATCCAGGAAAAACA-A  948
      |||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  GCCTAAATGAAATTAGTACTAAAGGCAGTAAGATATCCAGGAAAAACATA  950

seq1  TTAAAGATAAGCAGGGTCTCCAAAACAGATG-TGAGAGGCCAAGGGGCCT  997
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  TTAAAGATAAGCAGGGTCTCCAAAACAGATGTTGAGAGGTCAAGGGGCCT  1000

seq1  AATAATAAGAATTAGCAAGGAATAGAGGTTTTGGACTAAGTTGTTCAGCC  1047
       |||   |||||||||||||||||||| ||| ||||| ||||| ||||||
seq2  -ATA--TAGAATTAGCAAGGAATAGAGTTTTGGGACT-AGTTG-TCAGCC  1045

seq1  TATAT-CACTATCAGAATTATTTTATAGGATTAGAATGTATATTTTT-CA  1095
      ||||| ||||||||||  ||||||| ||   ||||   ||||||||| ||
seq2  TATATCCACTATCAGA--TATTTTA-AG--ATAGATGTTATATTTTTCCA  1090

seq1  TTTGTTGCATAT  1107
      |||| |||||||
seq2  TTTGGTGCATAT  1102


seq1: chr4_38688189_38689226
seq2: B6Ng01-171K04.g_63_1086 (reverse)

seq1  TCTGCAAATTTATTTTGATAATATAGCTCTTTTTCTAGAACTTGCCTTTC  50
      |||||||||||| |||||| ||||||||| ||||||||||||   |||||
seq2  TCTGCAAATTTA-TTTGAT-ATATAGCTC-TTTTCTAGAACT--GCTTTC  45

seq1  TAGGAACATGGTATATTTTTCTATACTTTTTCTTCTGTTATTTCTTTTAC  100
      |||| |||||||||| ||||||||||||     ||||    | || ||||
seq2  TAGG-ACATGGTATA-TTTTCTATACTT----CTCTG----TACTCTTAC  85

seq1  -AAAAATCTTCAAATCTTCATTTTACTGGCCTTTCACTTCTCTCATTTGA  149
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAAAAATCTTCAAATCTTCATTTTACT-GCCTTTCACTTCTCTCATTTGA  134

seq1  TACATTCAT-AAATGTGATAACTAGTTTTCTTAAGAGAGTAGAGGTTTGG  198
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCATAAAATGTGATAACTAGTTTTCTTAAGAGAGTAGAGGTTTGG  184

seq1  TATGAATAATGGGTCCTGGAATATATGTATTTTTCTCTTGTGTTTATTAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATAATGGGTCCTGGAATATATGTATTTTTCTCTTGTGTTTATTAT  234

seq1  GTCTAAGAGTTTTCTTGGAGACACATAGAGTCTTTATAGTGAATAATCAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGAGTTTTCTTGGAGACACATAGAGTCTTTATAGTGAATAATCAT  284

seq1  ACCAGCTGTACATCAGAATTAGTTTTACCTCCTTCCTTCCTATTCTTAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTGTACATCAGAATTAGTTTTACCTCCTTCCTTCCTATTCTTAGT  334

seq1  GCTTTTAAACATGGTTCTTTTCTTTAAATGTAGCTGATTTCGAATAAGAA  398
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GC-TTTAAACATGGTTCTTTTCTTTAAATGTAGCTGATTTCGAATAAGAA  383

seq1  AGGATAAAGTAGGTACCCTTGCTTCATTGGTTGGTTGTTTGGTTGGTTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAAGTAGGTACCCTTGCTTCATTGGTTGGTTGTTTGGTTGGTTGT  433

seq1  TGTTTTTTGTTTGTTTTGGTTTTTTGGG-TTTTTTTTTTTTTTTTTTTCG  497
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGTTTTTTGTTTGTTTTGGTTTTTTGGGTTTTTTTTTTTTTTTTTTTTCG  483

seq1  AGACAGGGTTTCTCTTTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGTTTCTCTTTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAG  533

seq1  ACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCTCAGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCTCAGTG  583

seq1  CTGGGATTAAAGGCATGTGCCACCATGCCCAGCTTATTTGCTTTTAAATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAGGCATGTGCCACCATGCCCAGCTTATTTGCTTTTAAATT  633

seq1  TTAATTAATTATTATATTTATTTACATTTCAAATATTGGCCCTGCAAGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAATTATTATATTTATTTACATTTCAAATATTGGCCCTGCAAGTG  683

seq1  TCCCCTCCCAGAATTTTTGCTGTATTAGAAGGGTTCTCTAGAGTAACAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCCAGAATTTTTGCTGTATTAGAAGGGTTCTCTAGAGTAACAGA  733

seq1  AATTATAGAACAAACCTCTGTCTCTGACTTAGTTTATTATCTAGTAAACC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGAACAAACCTCTGTCTCTGACTTAGTTTATTATCTAGTAAACC  783

seq1  ACACACAAAACTTTCTCTCTCAACCTCTCTCTCTCTCTCTCTCTCTCTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAAACTTTCTCTCTCAACCTCTCTCTCTCTCTCTCTCTCTCTCT  833

seq1  CTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGGGGGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGGGGGCT  883

seq1  GTGTGTTTCTGTGGCTGTTTGTTATTAGAATATGTTATAGGTTGTGGTCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTCTGTGGCTGTTTGTTATTAGAATATGTTATAGGTTGTGGTCC  933

seq1  AGGTGTTCTAATAATGGCTGCCTATGTCCTGATGCTCCAAGATGCTCCAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTCTAATAATGGCTGCCTATGTCCTGATGCTCCAAGATGCTCCAA  983

seq1  GTTCAGTACATGAGGCTGGTTTTCAGTTTAGGCAGGAATTC  1038
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTACATGAGGCTGGTTTTCAGTTTAGGCAGGAATTC  1024


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