BAC Information

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BAC

Clone NameB6Ng01-171M24
Chromosome4 (Build37)
Map Location 6,879,316 - 6,880,517
singlet/doubletsinglet
Overlap geneTox
Upstream gene3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414, LOC100039421
Downstream geneLOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171M24.bB6Ng01-171M24.g
ACCGA000595GA000596
length1,1841,159
definitionB6Ng01-171M24.b B6Ng01-171M24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttcatatggaggtaggatggcacaacaatcaaataatttgtga
cgtgattaaaaatgaaaatatataagtaaaaaattggacttccttttttt
atatataaattctttagagtctggagtttcctctgagtttttggatgctt
ccgttaaccctgcctcctagtttctgaatgcttcctttaacccagccttc
tagcaagcatcaggtcaacagataggtaatcactgagttaaaatccactg
taagttgaggatccatttttcttgtaacttcacaaataaatagatctgta
tactatccaaaattaaaagtatgatttcggcaatggtattagatgcatca
atgcttttaaagatgatatcctcccttcactggtaagccatattgacata
gatgtaaaaattgatgcaatgatatcacttcatgcattgatcctgtgcgt
ctctttttcttttctaagcatcgagtagaggcttgccactgatggacttt
agtagatcaatattgacaatcaaaaatcacaggaagggatccagttacag
ggctgcaacttggtgatcgagtatgtgtctcacacacacaaggtcctgag
ttcaatccccagcactaagacactgtgaaaaaatgatatgcacaaattat
gctgatcgttagcaagtagctcgggaattggtgcttactcccctgctctg
cacagagcttcaaaggtacataccacagaaatgtgaaaagacaatgatct
gtgtagaccacaatgctatctttcttagctgtagtatcttagatttgaaa
acatgacggagcatttttaccagttcccacttaatgtattttcaattctt
acattttaatatcacagttttgtaaagtgccctaagtgttaaacagaaaa
aaaaacttattacttaaaacatctaagagcttgtagtattttatcctctg
ctcacattttcattaactttctattactttttcgcttggcatttattgac
tctaatacgtgtatttatataactgggtatttgttgtactatgcctacct
acctagaatctgagtggcagctactgaaaattttatgagaaaggtaactc
acttatcatgccacttctgaaagaactaagattctggatactggggacct
cagcaatcatgcgaacaatacacggttcatctgt
gaattccaggacacaatgagaagaccaaacctacagataataggagtaga
tgagaatgaagattttcaacttaaagggccaataaatatattcaacaaaa
ttatagaagaaagcttccctaacctaaagaaagatatacccatatacata
caagaagcctacagaactctaaatagactggaccaaaaagaaattcctcc
cgacacataataatcagaacaacaaatgcactaaataaagatagaatatt
aaaagcagtaagggaaaaaggtcaagtaaaatataaagacatgtctatta
gaattacaccagacttctcaccagagactatgaaagccagaggatcccgg
attacagactctaagagaacacaaatgccagcccaagctactatacccag
caaaactctcaattactgtagatagagaaaccaaagtatttcatgacaaa
accaaattcacacagtatctttccccaaatccagccctacaaaggataat
aaagggaaaacaccaacaaaaggacagaaattatgccctagaaaaagcaa
gaaaataatccttcaacaaacttagaagacagcagcaaaaacaaacccta
acaacaaaaataacataaagcaacaattacttttccttaatatctcttaa
tatcaatggacacaattccccaataaaaagatatagactaacagactggc
tacacaagcaggacccaacattttgctgcttacaggagacccaactctgg
gaaaaagacagacactacctcagaattaaaggctggaaaacaattttcca
agcaaatggtctgaagaaacaagctggagtagccattctaatatcgaata
aaatcgatttcaacccaaagttagcaaaaaaggatgggggggcgcacttc
atactcatcaaaggtaaaatattccagagactgtcattctgaatatctat
gctccaaatgaaagggcagcacatcattaagaaacttagtaagtcaaagc
aaacatgtcctaaacaaataatagtgggtactcaacaccccactctccat
cattgcaccgatctggaagagaacttaaggaaaaccagtgaccttacgag
ttttgaacatggactttatgagatctagacttaatcttaaacaaagggga
tagtgtttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6879316_6880517
seq2: B6Ng01-171M24.b_31_1214

seq1  GAATTCCTTCATATGGAGGTAGGATGGCACAACAATCAAATAATTTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCATATGGAGGTAGGATGGCACAACAATCAAATAATTTGTGA  50

seq1  CGTGATTAAAAATGAAAATATATAAGTAAAAAATTGGACTTCCTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATTAAAAATGAAAATATATAAGTAAAAAATTGGACTTCCTTTTTTT  100

seq1  ATATATAAATTCTTTAGAGTCTGGAGTTTCCTCTGAGTTTTTGGATGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAATTCTTTAGAGTCTGGAGTTTCCTCTGAGTTTTTGGATGCTT  150

seq1  CCGTTAACCCTGCCTCCTAGTTTCTGAATGCTTCCTTTAACCCAGCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTAACCCTGCCTCCTAGTTTCTGAATGCTTCCTTTAACCCAGCCTTC  200

seq1  TAGCAAGCATCAGGTCAACAGATAGGTAATCACTGAGTTAAAATCCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGCATCAGGTCAACAGATAGGTAATCACTGAGTTAAAATCCACTG  250

seq1  TAAGTTGAGGATCCATTTTTCTTGTAACTTCACAAATAAATAGATCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGAGGATCCATTTTTCTTGTAACTTCACAAATAAATAGATCTGTA  300

seq1  TACTATCCAAAATTAAAAGTATGATTTCGGCAATGGTATTAGATGCATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCCAAAATTAAAAGTATGATTTCGGCAATGGTATTAGATGCATCA  350

seq1  ATGCTTTTAAAGATGATATCCTCCCTTCACTGGTAAGCCATATTGACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTAAAGATGATATCCTCCCTTCACTGGTAAGCCATATTGACATA  400

seq1  GATGTAAAAATTGATGCAATGATATCACTTCATGCATTGATCCTGTGCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAAAAATTGATGCAATGATATCACTTCATGCATTGATCCTGTGCGT  450

seq1  CTCTTTTTCTTTTCTAAGCATCGAGTAGAGGCTTGCCACTGATGGACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTCTTTTCTAAGCATCGAGTAGAGGCTTGCCACTGATGGACTTT  500

seq1  AGTAGATCAATATTGACAATCAAAAATCACAGGAAGGGATCCAGTTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATCAATATTGACAATCAAAAATCACAGGAAGGGATCCAGTTACAG  550

seq1  GGCTGCAACTTGGTGATCGAGTATGTGTCTCACACACACAAGGTCCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAACTTGGTGATCGAGTATGTGTCTCACACACACAAGGTCCTGAG  600

seq1  TTCAATCCCCAGCACTAAGACACTGTGAAAAAATGATATGCACAAATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCCCCAGCACTAAGACACTGTGAAAAAATGATATGCACAAATTAT  650

seq1  GCTGATCGTTAGCAAGTAGCTCGGGAATTGGTGCTTACTCCCCTGCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCGTTAGCAAGTAGCTCGGGAATTGGTGCTTACTCCCCTGCTCTG  700

seq1  CACAGAGCTTCAAAGGTACATACCACAGAAATGTGAAAAGACAATGATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCTTCAAAGGTACATACCACAGAAATGTGAAAAGACAATGATCT  750

seq1  GTGTAGACCACAATGCTATCTTTCTTAGCTGTAGTATCTTAGATTTGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGACCACAATGCTATCTTTCTTAGCTGTAGTATCTTAGATTTGAAA  800

seq1  ACATGACGGAGCATTTTTACCAGTTCCCACTTAATGTATTTTCAATTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACGGAGCATTTTTACCAGTTCCCACTTAATGTATTTTCAATTCTT  850

seq1  ACATTTTAATATCACAGTTTTGTAAAGTGCCCTAAGTGTTAAACAGAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAATATCACAGTTTTGTAAAGTGCCCTAAGTGTTAAACAGAAAA  900

seq1  AAAAAC-TATTACTTAAAACATCTAAGAGCTTGTAGTAATTTTATCCTCT  949
      |||||| |||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAAACTTATTACTTAAAACATCTAAGAGCTTGTAGT-ATTTTATCCTCT  949

seq1  GCTCACATTTTCATTAAACTTCCTATTACTTTTTCGCTTGGCATTTATTG  999
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  GCTCACATTTTCATT-AACTTTCTATTACTTTTTCGCTTGGCATTTATTG  998

seq1  AACTCTAATACGTGTATTTATATAACTGGGTATTTG-TGTACTTATGCTT  1048
       ||||||||||||||||||||||||||||||||||| ||||| ||||| |
seq2  -ACTCTAATACGTGTATTTATATAACTGGGTATTTGTTGTAC-TATGCCT  1046

seq1  ACTTACACTAAGAATCTGAGTGGGCAGCTACTTGAAAATATTATGAGAAA  1098
      || ||| || ||||||||||| ||||||||| ||||||| ||||||||||
seq2  ACCTAC-CT-AGAATCTGAGT-GGCAGCTAC-TGAAAATTTTATGAGAAA  1092

seq1  -GTAACTCACCTATCATGGCCACTTCTGAAAG-ACTAAGAGGATTCTGAG  1146
       ||||||||| |||||| |||||||||||||| |||||   |||||||  
seq2  GGTAACTCACTTATCAT-GCCACTTCTGAAAGAACTAA---GATTCTGGA  1138

seq1  TACTGGGGAGCTACAGACAAATCATTCCCCCAACCACATACACAGTGTTC  1196
      ||||||||| || |||   |||||| |   ||     ||||||   ||||
seq2  TACTGGGGACCT-CAG--CAATCATGCGAACA-----ATACAC--GGTTC  1178

seq1  ATCTGT  1202
      ||||||
seq2  ATCTGT  1184