BAC Information

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BAC

Clone NameB6Ng01-172P15
Chromosome4 (Build37)
Map Location 134,883,259 - 134,884,180
singlet/doubletsinglet
Overlap geneSrrm1
Upstream geneTrim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072
Downstream geneA330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172P15.bB6Ng01-172P15.g
ACCGA001449GA001450
length1,216926
definitionB6Ng01-172P15.b B6Ng01-172P15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccttaatagggacggggtttcgttctctctctctcttgcttct
tacactcttgctcctgaagatgtaagcaataaagttttgccgcagaagat
tctggtttgttgcgtctttcctggccggtcgtgagaacgcgtctaataac
aattggtgccgaattccgggacgagaaaaaactcgggactggcgcaagga
aaatccctcattccagaaccagaactgcgggtcgcggtaataaaggttcc
cgtaaagcagactgttaagaaggattcaactgtatgaattcagaactttt
cagctggggaacgagagtaccagtgagtacagctttacgaggtaagtctg
atcttgaactttctaaggaaattcaagacagtctatcagaagtaaagtgg
aatatgtttggccttgaattttttctagtgttagaagcccttttgttcct
tttcacatgttatcaagtggttaaggcagggcggattctagatgaaattc
aggacaagctatcagaagtaaagtggggagagagagtaggagcaaagaga
aaatatggtacacaaaataagtatacaggcctttccaagggtcttgaacc
cgaggaaaagttaaggttaggtaggaatacctggagagagattagaagaa
aaagaggaaaaagggaaaagaagaaagatcaattagcggaggtctctagg
aaaaggagcctgtgctcatcgctggatgggctcggggagccagctcttag
tagctctgaagcagatgaagaattctcctctgaggaaacagactgggagg
aagaagcagctcattatgagaaaaaagggtaccagccaggtaaagtgcta
gctaatcagttaaggaagccaaaagcggctggcgaaggccagtttgctga
ttggccctcagggcagtcggcttcagggtccgccctatgccggagtcccc
gccctgcgtagtgcgtcagccctgcgcagagaggcagtgcgtcagactca
ttcattcccagagaggacaagaaatacacaggcattttccggtctttgga
ggagccgtagggtgggcgtgtccacgctctcggttagaatacttaccaat
taagagcttgggcgagttcggtccgtaatatccggaacccatgccaattt
taccttgggtgcagttgacacagcttcacgcgattgcactatacctcctg
tctgtgactagtgtca
gaattctgaagagtcgagacctgataaaccttaaaaactgagccaggtcc
acagtgtcagccctggctgggccaggagctaaggattatttacactgact
tctctctccgtgtgtcaagggctacagacaggcttaacttgaagtctttt
gtaaggttgcttctagcttgttaatgtatgacgcttggtatatggcttgt
gttacaggtttattacagactctgagttggggagtgtttggttcttgaat
atacttttaaccacactacccccagggcagctctagtatttaagatagct
ttgttgtttgtctttagggtattggtaggtaagacacatggtcccttttc
agtggtgggtatatatttcttcttttttttaagatttatttatttattat
atgtaagtacaccgtagctgtcttcagacaccccagaagagattcagtta
tcattacagatggttgtgagccaccatgtggttgctgggatttgaactca
gggcctccggaagagcagtcggtgctcttaaccactgagccatctcttca
gcccgggtatatatttcttagataagaccgtaaaggttggagatagactc
cgagatagagcattcactcagtgtgtgcagtccctctgtctgccctctgt
ctctgctgcggaggaggggcagctctaagccagggctttccagattgggg
ccttaagtttatttggtgtctattaacattggctgttagccctggacatg
gttcatataagcttcagataagtttttcccactgattattatgtgtgtcc
caactaaaaaataagtgttctaattgaccgtttttgaattttttctctcc
tctgttgggtgatttttgtcaaataaatgagtgtttttgtctgaagctaa
tatcacaagctgtctttttattcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134883259_134884180
seq2: B6Ng01-172P15.g_65_990 (reverse)

seq1  TATGAAT-TAAAGACAGCTTTGTGATATTAGCTTCAGACAAAAACACTCA  49
      |||||||  ||||||||| |||||||||||||||||||||||||||||||
seq2  TATGAATAAAAAGACAGC-TTGTGATATTAGCTTCAGACAAAAACACTCA  49

seq1  TTTGTTTGACATAAATCACCCAACAGAGGAAGAGAAAAAATTCAAAAACG  99
      ||| ||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  TTTATTTGACAAAAATCACCCAACAGAGG-AGAGAAAAAATTCAAAAACG  98

seq1  GTC-ATTAGAACACTTATTTTTTAGTTGGGACACACATAATAATCAGTTG  148
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTCAATTAGAACACTTATTTTTTAGTTGGGACACACATAATAATCAGTGG  148

seq1  G-AAAACTTATCTGAAGCTTATATGAACCATGT-CAGGGCTAACAGCCAA  196
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAAAAACTTATCTGAAGCTTATATGAACCATGTCCAGGGCTAACAGCCAA  198

seq1  TGTTAATAGACACCAAAT-AACTTAAGGCCCCAATCTGG-AAGCCCTGGC  244
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  TGTTAATAGACACCAAATAAACTTAAGGCCCCAATCTGGAAAGCCCTGGC  248

seq1  TTAGAGCTGCCCCTCCTCCGCAGCAGAGACAGAGGGCAGACAGAGGGACT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCTGCCCCTCCTCCGCAGCAGAGACAGAGGGCAGACAGAGGGACT  298

seq1  GCACACACTGAGTGAATGCTCTATCTCGGAGTCTATCTCCAACCTTTACG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACTGAGTGAATGCTCTATCTCGGAGTCTATCTCCAACCTTTACG  348

seq1  GTCTTATCTAAGAAATATATACCCGGGCTGAAGAGATGGCTCAGTGGTTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATCTAAGAAATATATACCCGGGCTGAAGAGATGGCTCAGTGGTTA  398

seq1  AGAGCACCGACTGCTCTTCCGGAGGCCCTGAGTTCAAATCCCAGCAACCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACCGACTGCTCTTCCGGAGGCCCTGAGTTCAAATCCCAGCAACCA  448

seq1  CATGGTGGCTCACAACCATCTGTAATGATAACTGAATCTCTTCTGGGGTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGCTCACAACCATCTGTAATGATAACTGAATCTCTTCTGGGGTG  498

seq1  TCTGAAGACAGCTACGGTGTACTTACATATAATAAATAAATAAATCTTAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGACAGCTACGGTGTACTTACATATAATAAATAAATAAATCTTAA  548

seq1  AAAAAAGAAGAAATATATACCCACCACTGAAAAGGGACCATGTGTCTTAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAGAAATATATACCCACCACTGAAAAGGGACCATGTGTCTTAC  598

seq1  CTACCAATACCCTAAAGACAAACAACAAAGCTATCTTAAATACTAGAGCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAATACCCTAAAGACAAACAACAAAGCTATCTTAAATACTAGAGCT  648

seq1  GCCCTGGGGGTAGTGTGGTTAAAAGTATATTCAAGAACCAAACACTCCCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGGGGTAGTGTGGTTAAAAGTATATTCAAGAACCAAACACTCCCC  698

seq1  AACTCAGAGTCTGTAATAAACCTGTAACACAAGCCATATACCAAGCGTCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAGTCTGTAATAAACCTGTAACACAAGCCATATACCAAGCGTCA  748

seq1  TACATTAACAAGCTAGAAGCAACCTTACAAAAGACTTCAAGTTAAGCCTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAACAAGCTAGAAGCAACCTTACAAAAGACTTCAAGTTAAGCCTG  798

seq1  TCTGTAGCCCTTGACACACGGAGAGAGAAGTCAGTGTAAATAATCCTTAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGCCCTTGACACACGGAGAGAGAAGTCAGTGTAAATAATCCTTAG  848

seq1  CTCCTGGCCCAGCCAGGGCTGACACTGTGGACCTGGCTCAGTTTTTAAGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCCCAGCCAGGGCTGACACTGTGGACCTGGCTCAGTTTTTAAGG  898

seq1  TTTATCAGGTCTCGACTCTTCAGAATTC  922
      ||||||||||||||||||||||||||||
seq2  TTTATCAGGTCTCGACTCTTCAGAATTC  926