BAC Information

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BAC

Clone NameB6Ng01-173H12
Chromosome4 (Build37)
Map Location 5,214,168 - 5,330,049
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039297, LOC622019, Impad1, LOC100039338
Downstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173H12.bB6Ng01-173H12.g
ACCGA001806GA001807
length723448
definitionB6Ng01-173H12.b B6Ng01-173H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,329,329 - 5,330,049)(5,214,168 - 5,214,621)
sequence
gaattcccctctatgccataggaggcattttgttgttgttgttgttgttg
ttgttggtttgttttggtttttggcacacagcatataggaaaccaggatt
cagacctgaaatggtaaaacagagcatcagcccaccaacagtcggacctg
tcactgacacagacacagcttgtacggtgtggctctctgaggaggacatg
gcagggctgggaatgtgtcaaaatgtgagctatagctgtgggaaggctca
ggcttagcatctgccagatgcaccctgaccacagagaacacacacttctt
tcaggcaaatgtaagacacaacgggagattttcaaactggagatacacac
ctcagttcacattaaacagagtaggcctattccatgccaaagaaatagct
acattttaaataaaaactcaactgaaaatttcctaaatctagagaaagag
ataatcatccagatataagaggccctaagaacataatatagacaatataa
caaaagaaatttctttcaacatgtttaggtaaagcattaagtaaacagat
taaagaaaaagatgttgaaagctacaagagagaagagtgaagtcacatat
agagacagagtcctcagaataatagctgattattcaatggaaacttttaa
agaatgtcttggaaggatgtgcttcaggtttctgaaaataatcatagttt
ttacccagactagtgtattcaat

cttgatgtgtaaaatgaagatttggtcactagatgtatgcacttaggtta
tgaggggaaggttttttattgtagatataaggagagatatattttgagga
gtttagagctgaaaaagaaagtagtagactaaatatggccagcatattgt
acctggccatagtggagagggttggggacagtgagagagaaagacaaaga
caggaccaggagcatagttgaaataacagtgtttttccccccttcttctt
ttttaaaaattcatattattttaatttagttttacactccatattacatt
ccccccattccacactcctccccatgtcccacacctccccccaatcaacc
ccatctccacgtggttgccccaaccccccatcccacctaatctctatact
ccctgtggcctccattttcttaaggattaggtgtatcatctctgaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_5329329_5330049
seq2: B6Ng01-173H12.b_37_759 (reverse)

seq1  ATTGAATACACTAGTCTGGGTAAAAACTATGATT-TTTTCAG-AACCTGA  48
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  ATTGAATACACTAGTCTGGGTAAAAACTATGATTATTTTCAGAAACCTGA  50

seq1  AGCACATCCTTCCAAGACATTCTTTAAAAGTTTCCATTGAATAATCAGCT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATCCTTCCAAGACATTCTTTAAAAGTTTCCATTGAATAATCAGCT  100

seq1  ATTATTCTGAGGACTCTGTCTCTATATGTGACTTCACTCTTCTCTCTTGT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTGAGGACTCTGTCTCTATATGTGACTTCACTCTTCTCTCTTGT  150

seq1  AGCTTTCAACATCTTTTTCTTTAATCTGTTTACTTAATGCTTTACCTAAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCAACATCTTTTTCTTTAATCTGTTTACTTAATGCTTTACCTAAA  200

seq1  CATGTTGAAAGAAATTTCTTTTGTTATATTGTCTATATTATGTTCTTAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGAAAGAAATTTCTTTTGTTATATTGTCTATATTATGTTCTTAGG  250

seq1  GCCTCTTATATCTGGATGATTATCTCTTTCTCTAGATTTAGGAAATTTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTATATCTGGATGATTATCTCTTTCTCTAGATTTAGGAAATTTTC  300

seq1  AGTTGAGTTTTTATTTAAAATGTAGCTATTTCTTTGGCATGGAATAGGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGTTTTTATTTAAAATGTAGCTATTTCTTTGGCATGGAATAGGCC  350

seq1  TACTCTGTTTAATGTGAACTGAGGTGTGTATCTCCAGTTTGAAAATCTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTTTAATGTGAACTGAGGTGTGTATCTCCAGTTTGAAAATCTCC  400

seq1  CGTTGTGTCTTACATTTGCCTGAAAGAAGTGTGTGTTCTCTGTGGTCAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTGTCTTACATTTGCCTGAAAGAAGTGTGTGTTCTCTGTGGTCAGG  450

seq1  GTGCATCTGGCAGATGCTAAGCCTGAGCCTTCCCACAGCTATAGCTCACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATCTGGCAGATGCTAAGCCTGAGCCTTCCCACAGCTATAGCTCACA  500

seq1  TTTTGACACATTCCCAGCCCTGCCATGTCCTCCTCAGAGAGCCACACCGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACACATTCCCAGCCCTGCCATGTCCTCCTCAGAGAGCCACACCGT  550

seq1  ACAAGCTGTGTCTGTGTCAGTGACAGGTCCGACTGTTGGTGGGCTGATGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTGTGTCTGTGTCAGTGACAGGTCCGACTGTTGGTGGGCTGATGC  600

seq1  TCTGTTTTACCATTTCAGGTCTGAATCCTGGTTTTTTATATGCTGTGTGC  648
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  TCTGTTTTACCATTTCAGGTCTGAATCCTGGTTTCCTATATGCTGTGTGC  650

seq1  CAAAAACCAAAACAAACCAACAACAACAACAACAACAACAACAAAATGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACCAAAACAAACCAACAACAACAACAACAACAACAACAAAATGCC  700

seq1  TCCTATGGCATAGAGGGGAATTC  721
      |||||||||||||||||||||||
seq2  TCCTATGGCATAGAGGGGAATTC  723


seq1: chr4_5214168_5214621
seq2: B6Ng01-173H12.g_70_523

seq1  GAATTCCTTGATGTGTAAAATGAGGATTTGGTCACTAGATGTATGCACTT  50
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAATTCCTTGATGTGTAAAATGAAGATTTGGTCACTAGATGTATGCACTT  50

seq1  AGGTTATGAGGGGAAGGTTTTTTATTGTAGATATAAGGAGAGATATATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATGAGGGGAAGGTTTTTTATTGTAGATATAAGGAGAGATATATTT  100

seq1  TGAGGAGTTTAGAGCTGAAAAAGAAAGTAGTAGACTAAATATGGCCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGTTTAGAGCTGAAAAAGAAAGTAGTAGACTAAATATGGCCAGCA  150

seq1  TATTGTACCTGGCCATAGTGGAGAGGGTTGGGGACAGTGAGAGAGAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTACCTGGCCATAGTGGAGAGGGTTGGGGACAGTGAGAGAGAAAGA  200

seq1  CAAAGACAGGACCAGGAGCATAGTTGAAATAACAGTGTTTTTCCCCCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACAGGACCAGGAGCATAGTTGAAATAACAGTGTTTTTCCCCCCTT  250

seq1  CTTCTTTTTTAAAAATTCATATTATTTTAATTTAGTTTTACACTCCATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTTAAAAATTCATATTATTTTAATTTAGTTTTACACTCCATAT  300

seq1  TACATTCCCCCCATTCCACACTCCTCCCCATGTCCCACACCTCCCCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCCCCCCATTCCACACTCCTCCCCATGTCCCACACCTCCCCCCAA  350

seq1  TCAACCCCATCTCCACGTGGTTGCCCCAACCCCCCATCCCACCTAATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCCATCTCCACGTGGTTGCCCCAACCCCCCATCCCACCTAATCTC  400

seq1  TATACTCCCTGTGGCCTCCAGTCTCTTAAGGATTAGGTGTATCATCTCTG  450
      |||||||||||||||||||| | |||||||||||||||||||||||||||
seq2  TATACTCCCTGTGGCCTCCATTTTCTTAAGGATTAGGTGTATCATCTCTG  450

seq1  AATG  454
      ||||
seq2  AATG  454


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