BAC Information

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BAC

Clone NameB6Ng01-173J22
Chromosome4 (Build37)
Map Location 90,178,614 - 90,179,753
singlet/doubletsinglet
Overlap genenone
Upstream geneDmrta1, Zfp352, LOC619842, LOC435792
Downstream genePpia-ps4_804.1, LOC664840, LOC664848, LOC100042274, Elavl2, LOC664864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173J22.bB6Ng01-173J22.g
ACCGA001917GA001918
length1,1231,191
definitionB6Ng01-173J22.b B6Ng01-173J22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgtctacatgtgtgctgagtcattgaatgcatgttaatgtgta
tgttacattattgaatgcatgtttatttctgtggtactgaatgcatgttt
acatgtgtgcaatattattagtctcagttatacagaacccatcttcccaa
tcattttgattctttgtcattttactatttctttccattcccctatgacc
attgtgaggttttactttgtgagcttttactatgcttggtgcttccttac
tgagactatgtaactttcacaggaaagatgaaccactcctgtgtcccaac
aagctagtagcaggctcttcctcctcccagtcctcatcctcttcatcctc
ttacccttcttttgaaaattccgcatatgaatggcttttattatcttgat
aacctattcctcagtccagtcaaactcccgcatccctctctaattcacat
tctgtttctatgtgcagtatagcatgtaaacacatgaccacacacatata
tatcaacagataaataagcaagtgaaaccaacacagggttttgatacctg
ctgggctttgtaccttcgtctgaagaatctatctcggattcaaagttttg
gggtcacagagctatcagtcacatgcagcgtgtgtgctctgaattgcacc
atttcagtgtttcctgtagagattagactctcattaatacaggagcactc
tccaactaaaggcagtagcagtgaagagaatcccagtctctggtctagtg
tagatttcaggccacattaaaaaaaaagagaaagctggttagtgtttcag
cattgctaactaagaaatactgataatcacacagagcctccttcttccca
ggatgactttggctcccagcgcatctctctcaacacagcaagatgggggt
atctgaaacgatcacacagaacattctgttacagtcctatggcttatgac
atgactggggccatttactaaatgacccaatgaaacctgcttataccact
tcatcaacatctgctagaataaattattttgacaggacagtactgaaacc
ttattgctcagaaggactaacaaaaaggcaagattttatatttttttcat
aagtagaagaggctactgtggat

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcacggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggagaatacagcaatacctctcctgggc
atatatccagaagatgccccaacgggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatgtacacaatg
aagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatttactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aaaaatgaagactcagtgtggacactatgcccctccttagaagtgggaac
aaaacacccttggaaggagttacagagacaaagtttggagctgagatgaa
aggatggaccatgtagagactgccatatccagggatccaccccataatca
gcctccaaacgctgacaccattgcatacactagcaagattttatcgaaag
gacccagatgtagctgtctcttgtgagactatgccggggcctagcaaaca
tagaagtggattctcacagtcagctattggatggatcacagggctcccaa
tggaggagctagagaaaggtacccaaggagctaaagggatctgcaaccct
ataggtggaacacattatgaactaaccagtacccggagctcttgactcta
gcctgcatatgtattcaaaagattggcttagtcggccgtcactggaaaga
gaggccattgaacacgcaaaccttttaatgccagtacaggaccgctaggt
ctatatgggggaagtgtggtgtgcggcatcacgcgaccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_90178614_90179753
seq2: B6Ng01-173J22.b_46_1168 (reverse)

seq1  ATCCACAGTAGCATTCCTTCTACCTTATGAAAAAAATATAAAATCTTTGC  50
      |||||||||||| |  |||||| |||||||||||||||||||||| ||||
seq2  ATCCACAGTAGCCT--CTTCTA-CTTATGAAAAAAATATAAAATC-TTGC  46

seq1  CCTTTTTTGTGTAGTTCTTTCTGAGCAATAAAGGTTTCAGGTACTGTCCT  100
      |  ||||||| ||| || ||||||||||| ||||||||| ||||||||| 
seq2  C--TTTTTGT-TAG-TCCTTCTGAGCAAT-AAGGTTTCA-GTACTGTCC-  89

seq1  TTGTCAAAATAAATTTATTCTAGGCAGATGTTTGATGAAAGTGGTATAAG  150
       ||||||||| ||||||||||| ||||||| |||||| ||||||||||||
seq2  -TGTCAAAAT-AATTTATTCTA-GCAGATG-TTGATG-AAGTGGTATAAG  134

seq1  CAGGTTTTCATTGGGTCATTTAGTAAAATGGCCCCAGTCATGTCATAAGC  200
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAGG-TTTCATTGGGTCATTTAGT-AAATGGCCCCAGTCATGTCATAAGC  182

seq1  CATAGGACTGTAACAGAATGTTCTGTGTGATCGTTTCAGATACCCCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGACTGTAACAGAATGTTCTGTGTGATCGTTTCAGATACCCCCATC  232

seq1  TTGCTGTGTTGAGAGAGATGCGCTGGGAGCCAAAGTCATCCTGGGAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGTTGAGAGAGATGCGCTGGGAGCCAAAGTCATCCTGGGAAGAA  282

seq1  GGAGGCTCTGTGTGATTATCAGTATTTCTTAGTTAGCAATGCTGAAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTCTGTGTGATTATCAGTATTTCTTAGTTAGCAATGCTGAAACAC  332

seq1  TAACCAGCTTTCTC-TTTTTTTTAATGTGGCCTGAAATCTACACTAGACC  399
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAACCAGCTTTCTCTTTTTTTTTAATGTGGCCTGAAATCTACACTAGACC  382

seq1  AGAGACTGGGATTCTCTTCACTGCTACTGCCTTTAGTTGGAGAGTGCTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGGGATTCTCTTCACTGCTACTGCCTTTAGTTGGAGAGTGCTCC  432

seq1  TGTATTAATGAGAGTCTAATCTCTACAGGAAACACTGAAATGGTGCAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAATGAGAGTCTAATCTCTACAGGAAACACTGAAATGGTGCAATT  482

seq1  CAGAGCACACACGCTGCATGTGACTGATAGCTCTGTGACCCCAAAACTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCACACACGCTGCATGTGACTGATAGCTCTGTGACCCCAAAACTTT  532

seq1  GAATCCGAGATAGATTCTTCAGACGAAGGTACAAAGCCCAGCAGGTATCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCGAGATAGATTCTTCAGACGAAGGTACAAAGCCCAGCAGGTATCA  582

seq1  AAACCCTGTGTTGGTTTCACTTGCTTATTTATCTGTTGATATATATGTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGTGTTGGTTTCACTTGCTTATTTATCTGTTGATATATATGTGT  632

seq1  GTGGTCATGTGTTTACATGCTATACTGCACATAGAAACAGAATGTGAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCATGTGTTTACATGCTATACTGCACATAGAAACAGAATGTGAATT  682

seq1  AGAGAGGGATGCGGGAGTTTGACTGGACTGAGGAATAGGTTATCAAGATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGATGCGGGAGTTTGACTGGACTGAGGAATAGGTTATCAAGATA  732

seq1  ATAAAAGCCATTCATATGCGGAATTTTCAAAAGAAGGGTAAGAGGATGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGCCATTCATATGCGGAATTTTCAAAAGAAGGGTAAGAGGATGAA  782

seq1  GAGGATGAGGACTGGGAGGAGGAAGAGCCTGCTACTAGCTTGTTGGGACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGAGGACTGGGAGGAGGAAGAGCCTGCTACTAGCTTGTTGGGACA  832

seq1  CAGGAGTGGTTCATCTTTCCTGTGAAAGTTACATAGTCTCAGTAAGGAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTGGTTCATCTTTCCTGTGAAAGTTACATAGTCTCAGTAAGGAAG  882

seq1  CACCAAGCATAGTAAAAGCTCACAAAGTAAAACCTCACAATGGTCATAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGCATAGTAAAAGCTCACAAAGTAAAACCTCACAATGGTCATAGG  932

seq1  GGAATGGAAAGAAATAGTAAAATGACAAAGAATCAAAATGATTGGGAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGAAAGAAATAGTAAAATGACAAAGAATCAAAATGATTGGGAAGA  982

seq1  TGGGTTCTGTATAACTGAGACTAATAATATTGCACACATGTAAACATGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTGTATAACTGAGACTAATAATATTGCACACATGTAAACATGCA  1032

seq1  TTCAGTACCACAGAAATAAACATGCATTCAATAATGTAACATACACATTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTACCACAGAAATAAACATGCATTCAATAATGTAACATACACATTA  1082

seq1  ACATGCATTCAATGACTCAGCACACATGTAGACATGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATTCAATGACTCAGCACACATGTAGACATGAATTC  1123


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