BAC Information

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BAC

Clone NameB6Ng01-173K04
Chromosome9 (Build37)4 (Build37)
Map Location 33,084,340 - 33,084,73364,453,711 - 64,453,960
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173K04.bB6Ng01-173K04.g
ACCGA001929GA001930
length1,087250
definitionB6Ng01-173K04.b B6Ng01-173K04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(33,084,340 - 33,084,733)(64,453,711 - 64,453,960)
sequence
gaattccctagccactgtgtcttgagacattttaaatgtgccgttcttag
cgactcaggaacggtaaaacccgtgcctccgtgattactgtactaagggt
catccttcctgctcatccttcctcgcctacgttttcagacttacttttcc
aatccttttgtcagatagaaatgaacctatgtatccttgagcatttgctt
tttaaggctaaaataccccctttccagtccttccagtattttcccaaact
ctgtgctttttaaagggctatcgagaattccctgcttcatgaagtctacc
cagatctgttcatccgatgaactatttttgtattaacatgatgtttattc
acctcatgaattttgaatgtctataattaaagaataagaatattttcaat
aactttcgtactttattatgccttatcaatactagaagagtttaggcttc
catgagctgaatggaagcattggtcccctggatgagagcctttcattacc
gttagcttctatactagtctcaagttttaatgataagccaccacaatcac
tacagtcttactaatccaaatttgttgataatttcatatttttactctgg
tacaatactactcagctattaaaaagaatgaatttatgaaattcctaggc
aaatggatggacctggagggcatcatcctgagtgaggtaacccaatcaca
aaagaacacacatgatatgtactcactgataagtggatattagcccagaa
acttaaaatgcccaagatacaagatgtaatttgcaaaacacatgaaactc
aagaagaaggaagaccaaagtgtgaacactttgccccttcttagaattcg
gaatacaacactcatgggaaggagttacagagacaaagtttggagctgag
acgaaaggatgggtccatctagagacggccatacccaggaatccatccca
taatcagccttcaaatgctgacaccattgcatatactagcaatatttgct
gaaaggacccagaataatagctgtcttgtgaggctatgctgggtctagca
aacacagaagtgggtgctcacagttcagctatggatg

tcttcagctgtctaccctcacatgaatctcactctttcctagcatttgaa
cacagacaaacatgctcagcttgactgaagtttactgttaatgggttaat
ataattggagattttaagatatacttaagtagtagagtgcttgcctagca
tgcatgaagagtgcattcaatttagaggattacagaaagacagacaaaca
gattgatagaaaaggaggaaggaaggagggagagagggagggaggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33084340_33084733
seq2: B6Ng01-173K04.b_649_1130 (reverse)

seq1  CATCCAATAGCTG-ACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCA  49
      ||||| ||||||| |||||||||| |||||||||||||||||| | ||||
seq2  CATCC-ATAGCTGAACTGTGAGCACCCACTTCTGTGTTTGCTA-GACCCA  48

seq1  GCATAGTCTCACAGGAGACAGCTAT--ATCTGGGTCCTTTCAGCAAAATC  97
      |||||| ||||||  ||||||||||   |||||||||||||||| |||| 
seq2  GCATAGCCTCACA--AGACAGCTATTATTCTGGGTCCTTTCAGC-AAATA  95

seq1  TTGCTAGTGTGTGCATTGGTGTCAGCGTTTGGAAGCTGATTATGGGATGG  147
      |||||||| | |||| |||||||||| |||| | ||||||||||||||||
seq2  TTGCTAGTATATGCAATGGTGTCAGCATTTGAAGGCTGATTATGGGATGG  145

seq1  ATCCCCAGATATGGCCGTCTCTAGATGG-TCCATCCTTTCGTCACAGCTC  196
      || ||  | |||||||||||||||||||  ||||||||||||| ||||||
seq2  ATTCCTGGGTATGGCCGTCTCTAGATGGACCCATCCTTTCGTCTCAGCTC  195

seq1  CAAACTTTGTCTCTGTAACTCCTT-CCATGGGTGTTTTGTTCCCAATTC-  244
      |||||||||||||||||||||||| ||||| ||||| | |||| ||||| 
seq2  CAAACTTTGTCTCTGTAACTCCTTCCCATGAGTGTTGTATTCCGAATTCT  245

seq1  --------------------------------------------------  244
                                                        
seq2  AAGAAGGGGCAAAGTGTTCACACTTTGGTCTTCCTTCTTCTTGAGTTTCA  295

seq1  -------------------------------------TAAGTTTCTGGGC  257
                                           |||||||||||||
seq2  TGTGTTTTGCAAATTACATCTTGTATCTTGGGCATTTTAAGTTTCTGGGC  345

seq1  TAATATTCACTTATCAGTGAGTACATATTGTTTGAGTTCCTTTGTGATTG  307
      |||||| |||||||||||||||||||||  | || |||| ||||||||||
seq2  TAATATCCACTTATCAGTGAGTACATATCATGTGTGTTCTTTTGTGATTG  395

seq1  GCTTACCTCTCTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCGAGGA  357
      | ||||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  GGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGA  445

seq1  ATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTA  394
      |||||||||||||||||||||||||||||||||||||
seq2  ATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTA  482


seq1: chr4_64453711_64453960
seq2: B6Ng01-173K04.g_75_324

seq1  TCTTCAGCTGTCTACCCTCACATGAATCTCACTCTTTCCTAGCATTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGCTGTCTACCCTCACATGAATCTCACTCTTTCCTAGCATTTGAA  50

seq1  CACAGACAAACATGCTCAGCTTGACTGAAGTTTACTGTTAATGGGTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACAAACATGCTCAGCTTGACTGAAGTTTACTGTTAATGGGTTAAT  100

seq1  ATAATTGGAGATTTTAAGATATACTTAAGTAGTAGAGTGCTTGCCTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGGAGATTTTAAGATATACTTAAGTAGTAGAGTGCTTGCCTAGCA  150

seq1  TGCATGAAGAGTGCATTCAATTTAGAGGATTACAGAAAGACAGACAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAAGAGTGCATTCAATTTAGAGGATTACAGAAAGACAGACAAACA  200

seq1  GATTGATAGAAAAGGAGGAAGGAAGGAGGGAGAGAGGGAGGGAGGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATAGAAAAGGAGGAAGGAAGGAGGGAGAGAGGGAGGGAGGAGAGA  250


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