BAC Information

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BAC

Clone NameB6Ng01-173M12
Chromosome4 (Build37)
Map Location 34,566,932 - 34,703,070
singlet/doubletdoublet
Overlap geneRars2, Slc35a1, 1700003M02Rik, Gm136
Upstream geneRngtt, LOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l
Downstream gene1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173M12.bB6Ng01-173M12.g
ACCGA002037GA002038
length9411,009
definitionB6Ng01-173M12.b B6Ng01-173M12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,566,932 - 34,567,456)(34,702,068 - 34,703,070)
sequence
gaattccaggacagtccgagctgtgtaaaggcctgtctcaaaaaaggaaa
aaaaaaaaaaaaaaaaaggaagaagaagaagaaattattagaaagaaaaa
agaaagaagaaggcctgctttaaagaaatctgtatgtcaattactgagcg
ctaccactgtgtgcatagggctagtcctcagcattggattgtgttgtaac
tactagatttcaaagtatagctattacatctttttaaagacttgtttttc
ccactaatttactgtttaaaacaaaagtgtaccaggcagtctagttagaa
aattcaggacactttccccttggttttgaaatgatccacacaaggtagtt
attgacaaccatgctgattaacccaattggaagttctttttattgatggc
cagaccaagaatggcttgtgactctgaaaaaagctcttgagcttaaggtc
aggggggtatcattttaaaaacaaacccttcattgctcagggagagagag
agaaagagggagggggagagagagatacagatgtctagaacctaaaataa
atacatgaatatacatatttagagtatttttagaactgaggtttatcttc
tgaacactgttatgacagcaactctataggaaaatataatgaatgtattg
tcggagacaaacaaagggcagatcacccttttcccataagaaagcagaaa
agagggttaggggatgactcagctggaaagcgcttacaaacaaggacttg
agattaagtcccagaccccatttataaacggtatctcgtcacattcttta
taatcccaacactgttgacacagagaaagatggaacccttgtgacatgct
ggccagatagcccttgcctatacagtaagctccatgcaaaatagaaaatg
tgtctcaaaaaacacagtagatattatgtaaagtatacacc
gaattctttgagacacggtttctctactttggtctggctatcctggaaca
cactttgtggaccaggccagcatctagctcagagagattcgcccgcctct
gtctcttgagtgctggcgttaaggtgtgtgtgccaccacgctcagcagtg
atcttattctttttctttgttctaaggtagaatatcattgggtgccacac
ttctcaggtttgccctgtttgaagttgctggtctctgtaggaattccttg
atgaaatggtaacaagttggaatttatcttaacagttttgtgaatgggat
agagttttcaacctctcactgtttcttgttgtaaataagaacattactat
gtatctttcaaactgttttggagctttaatgtaatatcttacctattcaa
cacctgcgacatcatactaaatgtgtgttcttttcaactttgcctattct
tggggatgtcccatatgtataagagaaaatatctaaataccccaataagt
gagtgggagaaacttagccgttactttgtagctagtgaccaaagcagata
cctacaagtaaaacaggaatatttacacacacatatatagtatataagca
aatgaattaagactcctatttctatttctcatttataccgagaaaatttc
aatctaatcctagattttatgtagattttaaaaggagtctttaagtattt
ttgctgttttctttacctatatacgtggtaagctcatggttacttgggtt
cacgcctaatttactaaatgagaagttacaaatctgaactaaaagacatt
ggaaatagaattataatcattctctaagacatcagttcccaattgacttg
aactttcggcaaattcttgatatggattattaactgtaatttctaaagta
atttttagacccagacaatgctattccatgttctttggtatactttaatg
atcccgttaacactttatagcacaatttgaacagataaatgtatgctgaa
gttcagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_34566932_34567456
seq2: B6Ng01-173M12.b_40_564

seq1  GAATTCCAGGACAGTCAGAGCTGTGTAAAGGCCTGTCTCAAAAAAGGAAA  50
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGTCCGAGCTGTGTAAAGGCCTGTCTCAAAAAAGGAAA  50

seq1  AAAAAAAAAAAAAAAAAGGAAGAAGAAGAAGAAATTAAGAGAAAGAAAAA  100
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  AAAAAAAAAAAAAAAAAGGAAGAAGAAGAAGAAATTATTAGAAAGAAAAA  100

seq1  AGAAAGAAGAAGGCCTGCTTTAAAGAAATCTGTATGTCAATTACTGAGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAGAAGGCCTGCTTTAAAGAAATCTGTATGTCAATTACTGAGCG  150

seq1  CTACCACTGTGTGCATAGGGCTAGTCCTCAGCATTGGATTGTGTTGTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACTGTGTGCATAGGGCTAGTCCTCAGCATTGGATTGTGTTGTAAC  200

seq1  TACTAGATTTCAAAGTATAGCTATTACATCTTTTAAAAGACTTGTTTTTC  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TACTAGATTTCAAAGTATAGCTATTACATCTTTTTAAAGACTTGTTTTTC  250

seq1  CCACTAATTTACTGTTTAAAACAAAAGTGTACCAGGCAGTCTAGTTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAATTTACTGTTTAAAACAAAAGTGTACCAGGCAGTCTAGTTAGAA  300

seq1  AATTCAGGACACTTTCCCCTTGGTTTTGAAATGATCCACACAAGGTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGGACACTTTCCCCTTGGTTTTGAAATGATCCACACAAGGTAGTT  350

seq1  ATTGACAACCATGCTGATTAACCCAATTGGAAGTTCTTTTTATTGATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAACCATGCTGATTAACCCAATTGGAAGTTCTTTTTATTGATGGC  400

seq1  CAGACCAAGAATGGCTTGTGACTCTGAAAAAAGCTCTTGAGCTTAAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAAGAATGGCTTGTGACTCTGAAAAAAGCTCTTGAGCTTAAGGTC  450

seq1  AGGGGGGTATCATTTTAAAAACAAAGCCATCATTGCTCAAGGAGAGAGAG  500
      ||||||||||||||||||||||||| || |||||||||| ||||||||||
seq2  AGGGGGGTATCATTTTAAAAACAAACCCTTCATTGCTCAGGGAGAGAGAG  500

seq1  AGAGAGAGGGAGGGGGAGAGAGAGA  525
      ||| |||||||||||||||||||||
seq2  AGAAAGAGGGAGGGGGAGAGAGAGA  525

seq1: chr4_34702068_34703070
seq2: B6Ng01-173M12.g_68_1076 (reverse)

seq1  ATGCTG-ACTTCTACATACATTTATCTGTCCATA-TGTGCTATAAAGTGT  48
      |||||| |||||  ||||||||||||||| || | |||||||||||||||
seq2  ATGCTGAACTTCAGCATACATTTATCTGTTCAAATTGTGCTATAAAGTGT  50

seq1  --AAGGGATCATTAAAGTATACCAAAGAACATGG-ATAGCATTGTCTTGG  95
        | |||||||||||||||||||||||||||||| ||||||||||| |||
seq2  TAACGGGATCATTAAAGTATACCAAAGAACATGGAATAGCATTGTC-TGG  99

seq1  GTCTAAAAATTACTTTAGAAATTACAGTTAATAATCCATATCAAGAATTT  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAAAATTACTTTAGAAATTACAGTTAATAATCCATATCAAGAATTT  149

seq1  GCCGAAAGTTCAAGTCAATT-GGAACTGATGTCTTAGAGAATGATTATAA  194
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCCGAAAGTTCAAGTCAATTGGGAACTGATGTCTTAGAGAATGATTATAA  199

seq1  TTCTATTTCCATTGTCTTTTAGTTCAGATTTGTAACTTCTCATTTAGTAA  244
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTCCAATGTCTTTTAGTTCAGATTTGTAACTTCTCATTTAGTAA  249

seq1  ATTAGGCGTGAAACCAAGTAACCATGAGCTTACCACGTATATAGG-AAAG  293
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  ATTAGGCGTGAACCCAAGTAACCATGAGCTTACCACGTATATAGGTAAAG  299

seq1  AAAACAGGAAAAATATTTAAAGACTCCTTTTAAAATCTACATAAAATCTA  343
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAACAGCAAAAATACTTAAAGACTCCTTTTAAAATCTACATAAAATCTA  349

seq1  GGATTAGATTGAAATTTTCTCGGTATAAATGAGAAATAGAAATATGAATT  393
      |||||||||||||||||||||||||||||||||||||||||||| || | 
seq2  GGATTAGATTGAAATTTTCTCGGTATAAATGAGAAATAGAAATAGGAGTC  399

seq1  TTAATTCATTTGCTTATATACTATATATGTGTGTGTAAATATTCCTGTTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCATTTGCTTATATACTATATATGTGTGTGTAAATATTCCTGTTT  449

seq1  TATTTGTATGTATCTGCTTTTGTCACTAGCTACAAAGTAACGGCTAAGTT  493
      || ||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  TACTTGTAGGTATCTGCTTTGGTCACTAGCTACAAAGTAACGGCTAAGTT  499

seq1  TCTCCCACTCACTTATTGGGGTATTTAGATATTTTCTCTTATACATATGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCACTCACTTATTGGGGTATTTAGATATTTTCTCTTATACATATGG  549

seq1  GACATCCCCAAGAATAGGCAAAGTTGAAAAGAACACACATTTACTATGAT  593
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GACATCCCCAAGAATAGGCAAAGTTGAAAAGAACACACATTTAGTATGAT  599

seq1  GTCACAGGTGTTGAATAGGTAAGATATTACATTAAAGCTCCAAAACAGTT  643
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCAGGTGTTGAATAGGTAAGATATTACATTAAAGCTCCAAAACAGTT  649

seq1  TGAAAGATACATAGTAATGTTCTTATTTACAACAAGAAACAGTGAGAGGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATACATAGTAATGTTCTTATTTACAACAAGAAACAGTGAGAGGT  699

seq1  TGAAAACTCTATCCCATTCACAAAACTGTTAAGTTAAATTCCAACTTGTT  743
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGAAAACTCTATCCCATTCACAAAACTGTTAAGATAAATTCCAACTTGTT  749

seq1  ACCATTTCATCATGGAATTCCTACAGAGACCAGCAACTTCAAACAGGGCA  793
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCATCAAGGAATTCCTACAGAGACCAGCAACTTCAAACAGGGCA  799

seq1  AACCTGAGAAGTGTGGCACCCAATGCTATTCTACCTTAGAACAAAGAAAA  843
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AACCTGAGAAGTGTGGCACCCAATGATATTCTACCTTAGAACAAAGAAAA  849

seq1  AGAATAAGATCACTGCTGAGCGTGGTGGCACACACACCTTAACGCCAGCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGATCACTGCTGAGCGTGGTGGCACACACACCTTAACGCCAGCA  899

seq1  CTCAAGAGACAGAGGCGGGCGAATCTCTCTGAGCTAGATGCTGGCCTGGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAGACAGAGGCGGGCGAATCTCTCTGAGCTAGATGCTGGCCTGGT  949

seq1  CCACAAAGTGTGTTCCAGGATAGCCAGACCTATGTAGAGAAACCCTGTCT  993
      |||||||||||||||||||||||||||||| | ||||||||||| |||||
seq2  CCACAAAGTGTGTTCCAGGATAGCCAGACCAAAGTAGAGAAACCGTGTCT  999

seq1  CAAAGAATTC  1003
      ||||||||||
seq2  CAAAGAATTC  1009