BAC Information

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BAC

Clone NameB6Ng01-173N07
Chromosome4 (Build37)
Map Location 91,993,771 - 92,132,740
singlet/doubletdoublet
Overlap genenone
Upstream geneElavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
Downstream geneLOC620269, LOC384125, Tusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173N07.bB6Ng01-173N07.g
ACCGA002075GA002076
length1,2221,019
definitionB6Ng01-173N07.b B6Ng01-173N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,993,771 - 91,994,863)(92,132,126 - 92,132,740)
sequence
gaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaactggtaagaagaacacatgctccactat
gttcataccagccttgtttataatagccagaagttggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaaatgaatttatgaaattcctaggcaaa
tggatgtacctggagggtatcatcctgaatgaagtaacccaatcacaaag
gaactcgcacaatatgtactcactgataagtggatattagcccagaaact
taggatacccaagatataagatacaacttgtcaattcttaaatctagaca
ctgatttcttccttaccattccacttaagtccttcaatatgtcatttgaa
aacatgaaatttctaaacacgtagagtttcaatgctccctagctttttca
gcacttctctgagagaaacctcaaatgtcttagctttgatgatattgatg
tatcatttgctttcatttagtaatctgtttggtaatgaagcattatttca
gataaaagcctctcattcagaaaggttaaatgtcagaaagatgaaggcca
atttatcaaagataaattctctcaggtcttattctaccaggttcaaaaca
aaggacatattattaaggaattcacctttactacgtcatgtaaaatcaaa
gtacaaatgttgctgcttacctgtctccatgacatatcagtaggtataca
gtcaagtataatcttggaaaggctctacattttttttcactttgttactg
ttcttaaaatctaaatatgaaaaggtccttcgggaattatttaactagag
ttcagaacatggattcttcttcacgttattgtacacttatttattttcca
tcgaaaatttaatttttccaca

gaattcactttgtagagcaggctggcctcgatcccagaaatccgcctgcc
tctgcctcccgatgctgggattaaaggcatgtgccaccacgcccggttta
gaatgctagcatttccaaacaaaggatattactctagggctcagtgggca
tgcgtgtgtactgcttttgacaaggagcaagttgtgtacccaacagtaag
tcagagatatcacaacgactccattaagattttgctagtataaaaattct
actgtaatctagaaaacagtttagtttttggttcactttagaaagtttta
acaacaaatggaaaaatgatctctagaagaaataaaagtaaaaccaaaac
gaatgctcaaaatggtgacaaatgtgtacatgtccttctcccttttctaa
taagaacttaatcagtggatgaggtaaaatctaagtgcttcatcttaggt
gtgtgagggaactgaggtcacaaggggagcactgctctaacacagattga
tggtcagatagaaagaatgtcattttactagagcagggaaaaggagcaag
cacagaagagaactgggaattggcattggagaggagaccaagattgtaat
caaaatacttgggagcttcagtatgtcaaaacccaagagaagaaagtgca
aggaaaaaggtcatcaggaactgtattctttcatgttaaccccttttgga
gatctaccatgctttctgtgtgagcacctcaggaacatatccccaagctt
cccccagggtgaagagattaagaattgctctgatgtccttagactgcagt
tactaaggaggtgtgcctgagaagaaagtgatgaaccctagactgatctg
cagcaggtttcccagagtataactagctagtgggaaggcaaaagcccaat
tctaaatccttctggctatagtgccaattatcacaggagggatagggaga
tagagggaatagagagtagtattcctgaatatacggtgatgctattttgg
tttgtgtttgttttgaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_91993771_91994863
seq2: B6Ng01-173N07.b_178_1265

seq1  AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGGAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGGAACAC  50

seq1  TCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCA  100

seq1  GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGC  150

seq1  AATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAAGA  200

seq1  ACACATGCTCCACTATGTTCATACCAGCCTTGTTTATAATAGCCAGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCTCCACTATGTTCATACCAGCCTTGTTTATAATAGCCAGAAGT  250

seq1  TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG  300

seq1  GTACATTTACACAATGGAATACTACTCAGCTATTAAAAAAATGAATTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTTACACAATGGAATACTACTCAGCTATTAAAAAAATGAATTTAT  350

seq1  GAAATTCCTAGGCAAATGGATGTACCTGGAGGGTATCATCCTGAATGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCCTAGGCAAATGGATGTACCTGGAGGGTATCATCCTGAATGAAG  400

seq1  TAACCCAATCACAAAGGAACTCGCACAATATGTACTCACTGATAAGTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAATCACAAAGGAACTCGCACAATATGTACTCACTGATAAGTGGA  450

seq1  TATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAACTTGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAACTTGTCAA  500

seq1  TTCTTAAATCTAGACACTGATTTCTTCCTTACCATTCCACTTAAGTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAATCTAGACACTGATTTCTTCCTTACCATTCCACTTAAGTCCTT  550

seq1  CAATATGTCATTTGAAAACATGAAATTTCTAAACACGTAGAGTTTCAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGTCATTTGAAAACATGAAATTTCTAAACACGTAGAGTTTCAATG  600

seq1  CTCCCTAGCTTTTTCAGCACTTCTCTGAGAGAAACCTCAAATGTCTTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAGCTTTTTCAGCACTTCTCTGAGAGAAACCTCAAATGTCTTAGC  650

seq1  TTTGATGATATTGATGTATCATTTGCTTTCATTTAGTAATCTGTTTGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGATATTGATGTATCATTTGCTTTCATTTAGTAATCTGTTTGGTA  700

seq1  ATGAAGCATTATTTCAGATAAAAGCCTCTCATTCAGAAAGGTTAAATGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCATTATTTCAGATAAAAGCCTCTCATTCAGAAAGGTTAAATGTC  750

seq1  AGAAAGATGAAGGCCAATTTATCAAAGATAAATTCTCTCAGGTCTTATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATGAAGGCCAATTTATCAAAGATAAATTCTCTCAGGTCTTATTC  800

seq1  TACCA-GTTCAAAACAAAGGACATA-TATTAAGGAATTCACCTTTACTAC  848
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  TACCAGGTTCAAAACAAAGGACATATTATTAAGGAATTCACCTTTACTAC  850

seq1  GTCATGTAAAATCAAAGTTACAAATGTTGCTGCTTACCTGTCTCCATGAC  898
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTCATGTAAAATCAAAG-TACAAATGTTGCTGCTTACCTGTCTCCATGAC  899

seq1  ATATCAGTTAGGTATACAGTCAAGTAT-ATC-TGGAAAGGCCTCTACATT  946
      ||||||| ||||||||||||||||||| ||| |||||||| |||||||||
seq2  ATATCAG-TAGGTATACAGTCAAGTATAATCTTGGAAAGG-CTCTACATT  947

seq1  TTTTTTCACTTTGTTACTGTTCTTAAAATTCCTAAATATTGAAAAAGGTC  996
      |||||||||||||||||||||||||||||  ||||||||   ||||||||
seq2  TTTTTTCACTTTGTTACTGTTCTTAAAAT--CTAAATAT--GAAAAGGTC  993

seq1  C-TCGGTATTTATTTTAACTAGAGTTCAGAACTTAGATTGTCCTTTTCTT  1045
      | |||| | ||| ||||||||||||||||||| | |||     | |||||
seq2  CTTCGGGAATTA-TTTAACTAGAGTTCAGAACATGGAT-----TCTTCTT  1037

seq1  CACTTTATGGTACACTTATTTTATTTTCATCAGAAATTTA---TTTCCAC  1092
      ||| |||| ||||||||||||  ||| ||||  |||||||   |||||||
seq2  CACGTTATTGTACACTTATTTATTTTCCATCGAAAATTTAATTTTTCCAC  1087

seq1  A  1093
      |
seq2  A  1088


seq1: chr4_92132126_92132740
seq2: B6Ng01-173N07.g_68_682 (reverse)

seq1  CTCCCAAGTATTTTGATTACAATCTTGGTCTCCTCTCCAATGCCAATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAGTATTTTGATTACAATCTTGGTCTCCTCTCCAATGCCAATTCC  50

seq1  CAGTTCTCTTCTGTGCTTGCTCCTTTTCCCTGCTCTAGTAAAATGACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCTTCTGTGCTTGCTCCTTTTCCCTGCTCTAGTAAAATGACATT  100

seq1  CTTTCTATCTGACCATCAATCTGTGTTAGAGCAGTGCTCCCCTTGTGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATCTGACCATCAATCTGTGTTAGAGCAGTGCTCCCCTTGTGACC  150

seq1  TCAGTTCCCTCACACACCTAAGATGAAGCACTTAGATTTTACCTCATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCCTCACACACCTAAGATGAAGCACTTAGATTTTACCTCATCCA  200

seq1  CTGATTAAGTTCTTATTAGAAAAGGGAGAAGGACATGTACACATTTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTAAGTTCTTATTAGAAAAGGGAGAAGGACATGTACACATTTGTCA  250

seq1  CCATTTTGAGCATTCGTTTTGGTTTTACTTTTATTTCTTCTAGAGATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGAGCATTCGTTTTGGTTTTACTTTTATTTCTTCTAGAGATCAT  300

seq1  TTTTCCATTTGTTGTTAAAACTTTCTAAAGTGAACCAAAAACTAAACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATTTGTTGTTAAAACTTTCTAAAGTGAACCAAAAACTAAACTGT  350

seq1  TTTCTAGATTACAGTAGAATTTTTATACTAGCAAAATCTTAATGGAGTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGATTACAGTAGAATTTTTATACTAGCAAAATCTTAATGGAGTCG  400

seq1  TTGTGATATCTCTGACTTACTGTTGGGTACACAACTTGCTCCTTGTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATATCTCTGACTTACTGTTGGGTACACAACTTGCTCCTTGTCAAA  450

seq1  AGCAGTACACACGCATGCCCACTGAGCCCTAGAGTAATATCCTTTGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTACACACGCATGCCCACTGAGCCCTAGAGTAATATCCTTTGTTTG  500

seq1  GAAATGCTAGCATTCTAAACCGGGCGTGGTGGCACATGCCTTTAATCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCTAGCATTCTAAACCGGGCGTGGTGGCACATGCCTTTAATCCCA  550

seq1  GCATCGGGAGGCAGAGGCAGGCGGATTTCTGGGATCGAGGCCAGCCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGGGAGGCAGAGGCAGGCGGATTTCTGGGATCGAGGCCAGCCTGCT  600

seq1  CTACAAAGTGAATTC  615
      |||||||||||||||
seq2  CTACAAAGTGAATTC  615


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