BAC Information

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BAC

Clone NameB6Ng01-175G24
Chromosome4 (Build37)
Map Location 68,438,400 - 68,612,437
singlet/doubletdoublet
Overlap geneDbc1
Upstream geneLOC433715, Tcp1-ps1
Downstream geneLOC622491, LOC433716, LOC100039888
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175G24.bB6Ng01-175G24.g
ACCGA003243GA003244
length1,0801,117
definitionB6Ng01-175G24.b B6Ng01-175G24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,438,400 - 68,439,476)(68,611,336 - 68,612,437)
sequence
gaattcatgtagtcatttttgtgtcctctgaaccaagtagatgcactaag
gtgaaactatatgtgtagcaatgagtagagtcttctttttttatattttt
attagatatatattagatattttcttcatttacattttaaatgctattcc
ctataccctccccctgccctgctccccaacccacccactcctgcttccta
gtgtggcattccactgtactggggcataaaatcttcacaagaccaaggtc
ttctagtaaaatgtgtatgggattttaaaatcaaccatatcagtatcacc
gaggacctggaatgcatcccagatctactcagtcagatataactggggtt
agtccaatcatgtatattgaaatggtctcagctaagtgtgtctcagatag
cagtctaacaagtgttaacccatatcaacagagggatgcaatataaatcc
tatatttccaaaaggcagcccattgtttttgaaagttcttattaaaatga
cttccattgaatgctattaaatcacaatttcccttcaatttttctcacac
aatttctttctaccaccaaaacaatgatattataactcaatgtaaaaaca
tttaatgcatagataagtccattccagcacagggatctaacagtaagggc
aattgcagaaaggactagcatgtattgacctttttttttgttgttgttgt
tgttgttcactacaaacatcatctaaaatcgtgattcatcctcacagttg
acctctgaagggatttttgccactatatcaatttacaggtgagaatagtt
aggatcaaaggacatacagttcataatttcataagaatgaacacaactgc
ttacaaagccatgagctgaattaatttcaaattttgtaaaccattatcct
gacttccgatttcctatttttgggaagatatagtttacctgttcacaagt
aaataagtaaatccctgttttctaataggaaaaccattgctgacactgga
agttgaaatagcatctctcacttcccatttcaaagtccagtaaatggcgt
gttatcatggtggccaggcatactacctgc

gaattctgttttaatgtcatcacataatgaaaagcacatggggatccaag
actatataactgctatatagaacccagtagaaaaatcggactgtattaat
ccctttatgaaaaaaagttctgctttctggaaaacaatatatatatactt
agacatcctttcaaacatcctttcaaacatttcatgaaaatgaaatgatt
actttacttacattaatttaaatctcatgtctgtatattcataatataag
cacaggagcatacacaagaatatatatgaatccatacacaggtgtattta
tacaggtccagaaacattcccttcctaataaattcccctaaatgtgacta
atctcttaaagtgcaggaaattgagctagcctttgtaagtacatggcttg
taggtgggctcacaacctcagggaaaggaaaatatgaagccctttgagcc
acaggacatccagaagttgaagtcaatttcactaaaaagcaagtatgata
ccagtctttttaatacttttttgggggtgcagggaagtacttagaaatac
agggattttaggcccatctgcaataaagccattaacgacctcacaaacgt
tgtcttttctggagctggatggcactttagctcccagaagggggagctgt
gactccatttcaaccctagagaaagagctctgatattccaaataagctct
ggggcccccctgctgagctgagaaggcccagctcctgctgtagggagtaa
gaatgtagcagcataggtggggattgtaaaaatctctcctgctcagttca
agtgggacatctccctcttagtgctttcaagggagtttatgccattgttc
aaatagttccctctctcccttttttcctttttttccccctcaactcatct
ttgccccaaaagacccttgcagtatctgagaaaatattttctgatttgca
tatgctttctcatcctggttcttagatgaattcattaggaaatatcacca
aaattaggaccttaaagttactcatagcatccttttctccccctgcaatc
ctcctgacctaattcttcaaagtttaacaaagttaggtttaaatgaacct
tcgtggttaaccatatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_68438400_68439476
seq2: B6Ng01-175G24.b_39_1118

seq1  GAATTCATGTAGTCATTTTTGTGTCCTCTGAACCAAGTAGATGCACTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAGTCATTTTTGTGTCCTCTGAACCAAGTAGATGCACTAAG  50

seq1  GTGAAACTATATGTGTAGCAATGAGTAGAGTCTTCTTTTTTTATATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACTATATGTGTAGCAATGAGTAGAGTCTTCTTTTTTTATATTTTT  100

seq1  ATTAGATATATATTAGATATTTTCTTCATTTACATTTTAAATGCTATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATATATATTAGATATTTTCTTCATTTACATTTTAAATGCTATTCC  150

seq1  CTATACCCTCCCCCTGCCCTGCTCCCCAACCCACCCACTCCTGCTTCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCCTCCCCCTGCCCTGCTCCCCAACCCACCCACTCCTGCTTCCTA  200

seq1  GTGTGGCATTCCACTGTACTGGGGCATAAAATCTTCACAAGACCAAGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCATTCCACTGTACTGGGGCATAAAATCTTCACAAGACCAAGGTC  250

seq1  TTCTAGTAAAATGTGTATGGGATTTTAAAATCAACCATATCAGTATCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTAAAATGTGTATGGGATTTTAAAATCAACCATATCAGTATCACC  300

seq1  GAGGACCTGGAATGCATCCCAGATCTACTCAGTCAGATATAACTGGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCTGGAATGCATCCCAGATCTACTCAGTCAGATATAACTGGGGTT  350

seq1  AGTCCAATCATGTATATTGAAATGGTCTCAGCTAAGTGTGTCTCAGATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAATCATGTATATTGAAATGGTCTCAGCTAAGTGTGTCTCAGATAG  400

seq1  CAGTCTAACAAGTGTTAACCCATATCAACAGAGGGATGCAATATAAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTAACAAGTGTTAACCCATATCAACAGAGGGATGCAATATAAATCC  450

seq1  TATATTTCCAAAAGGCAGCCCATTGTTTTTGAAAGTTCTTATTAAAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCCAAAAGGCAGCCCATTGTTTTTGAAAGTTCTTATTAAAATGA  500

seq1  CTTCCATTGAATGCTATTAAATCACAATTTCCCTTCAATTTTTCTCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATTGAATGCTATTAAATCACAATTTCCCTTCAATTTTTCTCACAC  550

seq1  AATTTCTTTCTACCACCAAAACAATGATATTATAACTCAATGTAAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTTCTACCACCAAAACAATGATATTATAACTCAATGTAAAAACA  600

seq1  TTTAATGCATAGATAAGTCCATTCCAGCACAGGGATCTAACAGTAAGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCATAGATAAGTCCATTCCAGCACAGGGATCTAACAGTAAGGGC  650

seq1  AATTGCAGAAAGGACTAGCATGTATTGACCTTTTTTTTTGTTGTTGTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCAGAAAGGACTAGCATGTATTGACCTTTTTTTTTGTTGTTGTTGT  700

seq1  TGTTGTTCACTACAAACATCATCTAAAATCGTGATTCATCCTCACAGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTCACTACAAACATCATCTAAAATCGTGATTCATCCTCACAGTTG  750

seq1  ACCTCTGAAGGGATTTTTGCCACTATATCAATTTACAGGTGAGAATAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGAAGGGATTTTTGCCACTATATCAATTTACAGGTGAGAATAGTT  800

seq1  AGGATCAAAGGACATACAGTTCATAATTTCATAAGAATGAACACAACTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAAAGGACATACAGTTCATAATTTCATAAGAATGAACACAACTGC  850

seq1  TTACAAAGCCATGAGCTGAATTAATTTCAAATTTTGTAAACCATTATCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGCCATGAGCTGAATTAATTTCAAATTTTGTAAACCATTATCCT  900

seq1  GACTTCCGATTTCCTATTTTT-GGAAGATATAGTTTACCTGTTCACAAGT  949
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GACTTCCGATTTCCTATTTTTGGGAAGATATAGTTTACCTGTTCACAAGT  950

seq1  AAATAAGTAAAT-CCTGTTTTCTTAAATAGGAAAACCATTGCTGACACTG  998
      |||||||||||| ||||||||||  |||||||||||||||||||||||||
seq2  AAATAAGTAAATCCCTGTTTTCT--AATAGGAAAACCATTGCTGACACTG  998

seq1  GAAGTTGAAATAGCATCTCTCAACTTCCA-TTCAAAGTTCAGTAAATGGC  1047
      ||||||||||||||||||||||  | ||| |||||||| |||||||||||
seq2  GAAGTTGAAATAGCATCTCTCACTTCCCATTTCAAAGTCCAGTAAATGGC  1048

seq1  GTGTTATCAT-GTGG-CAGGCATACTACCTGC  1077
      |||||||||| |||| ||||||||||||||||
seq2  GTGTTATCATGGTGGCCAGGCATACTACCTGC  1080


seq1: chr4_68611336_68612437
seq2: B6Ng01-175G24.g_65_1181 (reverse)

seq1  GATATGGTTA--CAAGGA-GTTCATT--AACTTA--CTTGTTAAACTTTG  43
      ||||||||||  || | | |||||||  ||| ||   |||||||||||||
seq2  GATATGGTTAACCACGAAGGTTCATTTAAACCTAACTTTGTTAAACTTTG  50

seq1  -AGATTTAGGTCA-GAGGA-TGCA-GGGGAGAAA--GATGCTATGAGTAA  87
       ||| |||||||| ||||| |||| |||||||||  ||||||||||||||
seq2  AAGAATTAGGTCAGGAGGATTGCAGGGGGAGAAAAGGATGCTATGAGTAA  100

seq1  CTTTAAGGTCCT-ATTTTGGTGATATTTCCTAATGAATTCATCTAAGAAA  136
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  CTTTAAGGTCCTAATTTTGGTGATATTTCCTAATGAATTCATCTAAG-AA  149

seq1  CCAGGATGAGAAAGCATATGCAAATCAGAAAATATTTTCTCAGATACTGC  186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATGAGAAAGCATATGCAAATCAGAAAATATTTTCTCAGATACTGC  199

seq1  AA-GGTCTTTTGGGGCAAAGATGAGTTGAGGGGG-AAAAAAGGAAAAAAG  234
      || ||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGGGTCTTTTGGGGCAAAGATGAGTTGAGGGGGAAAAAAAGGAAAAAAG  249

seq1  GGAGAGAGGGAACTATTTGAACAATGGCATAAACTCCCTTGAAAGCACTA  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGGGAACTATTTGAACAATGGCATAAACTCCCTTGAAAGCACTA  299

seq1  AGAGGGAGATGTCCCACTTGAACTGAGCAGGAGAGATTTTTACAATCCCC  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGATGTCCCACTTGAACTGAGCAGGAGAGATTTTTACAATCCCC  349

seq1  ACCTATGCTGCTACATTCTTACTCCCTACAGCAGGAGCTGGGCCTTCTCA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGCTGCTACATTCTTACTCCCTACAGCAGGAGCTGGGCCTTCTCA  399

seq1  GCTCAGCAGGGGGGCCCCAGAGCTTATTTGGAATATCAGAGCTCTTTCTC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCAGGGGGGCCCCAGAGCTTATTTGGAATATCAGAGCTCTTTCTC  449

seq1  TAGGGTTGAAATGGAGTCACAGCTCCCCCTTCTGGGAGCTAAAGTGCCAT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTGAAATGGAGTCACAGCTCCCCCTTCTGGGAGCTAAAGTGCCAT  499

seq1  CCAGCTCCAGAAAAGACAACGTTTGTGAGGTCGTTAATGGCTTTATTGCA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCAGAAAAGACAACGTTTGTGAGGTCGTTAATGGCTTTATTGCA  549

seq1  GATGGGCCTAAAATCCCTGTATTTCTAAGTACTTCCCTGCACCCCCAAAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCCTAAAATCCCTGTATTTCTAAGTACTTCCCTGCACCCCCAAAA  599

seq1  AAGTATTAAAAAGACTGGTATCATACTTGCTTTTTAGTGAAATTGACTTC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTAAAAAGACTGGTATCATACTTGCTTTTTAGTGAAATTGACTTC  649

seq1  AACTTCTGGATGTCCTGTGGCTCAAAGGGCTTCATATTTTCCTTTCCCTG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGGATGTCCTGTGGCTCAAAGGGCTTCATATTTTCCTTTCCCTG  699

seq1  AGGTTGTGAGCCCACCTACAAGCCATGTACTTACAAAGGCTAGCTCAATT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTGAGCCCACCTACAAGCCATGTACTTACAAAGGCTAGCTCAATT  749

seq1  TCCTGCACTTTAAGAGATTAGTCACATTTAGGGGAATTTATTAGGAAGGG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCACTTTAAGAGATTAGTCACATTTAGGGGAATTTATTAGGAAGGG  799

seq1  AATGTTTCTGGACCTGTATAAATACACCTGTGTATGGATTCATATATATT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTCTGGACCTGTATAAATACACCTGTGTATGGATTCATATATATT  849

seq1  CTTGTGTATGCTCCTGTGCTTATATTATGAATATACAGACATGAGATTTA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTATGCTCCTGTGCTTATATTATGAATATACAGACATGAGATTTA  899

seq1  AATTAATGTAAGTAAAGTAATCATTTCATTTTCATGAAATGTTTGAAAGG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGTAAGTAAAGTAATCATTTCATTTTCATGAAATGTTTGAAAGG  949

seq1  ATGTTTGAAAGGATGTCTAAGTATATATATATTGTTTTCCAGAAAGCAGA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGAAAGGATGTCTAAGTATATATATATTGTTTTCCAGAAAGCAGA  999

seq1  ACTTTTTTTCATAAAGGGATTAATACAGTCCGATTTTTCTACTGGGTTCT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTCATAAAGGGATTAATACAGTCCGATTTTTCTACTGGGTTCT  1049

seq1  ATATAGCAGTTATATAGTCTTGGATCCCCATGTGCTTTTCATTATGTGAT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCAGTTATATAGTCTTGGATCCCCATGTGCTTTTCATTATGTGAT  1099

seq1  GACATTAAAACAGAATTC  1102
      ||||||||||||||||||
seq2  GACATTAAAACAGAATTC  1117


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