BAC Information

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BAC

Clone NameB6Ng01-175L14
Chromosome4 (Build37)
Map Location 140,249,496 - 140,392,106
singlet/doubletdoublet
Overlap geneRcc2, Padi6, Padi4, Padi3, Padi1
Upstream genePax7, Gm1667, Klhdc7a, Igsf21, LOC100040728, Arhgef10l
Downstream genePadi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175L14.bB6Ng01-175L14.g
ACCGA003453GA003454
length955775
definitionB6Ng01-175L14.b B6Ng01-175L14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,391,172 - 140,392,106)(140,249,496 - 140,250,268)
sequence
gaattcaaaggtgggtctttctgtcttctggtgctgtgaccatgaccaaa
agcaacttatataagaaagtgtttaatttggggcccctggtttcagagca
gtagagtctaggaccctggtggcagggagcatggcaagcatccagacagg
catggtgctggtgcagcatccgagcgtttacaacctgatcctcaaacaga
agaccgaaaaggagagagaactgggaagtgccaggcttttagaagcctcc
aaggccagccccagtggcacacctccctgaggccacacctcccgggcccc
gccccgaggctccgcctcctaatccttctaccaactgaggatcaagcttt
cagaatataggacccactgaagggcattctcattcaaatcagcacagctt
ccagcactgactctgcgaagttgctcaagtcctgaaggaaggggagacac
taggcactaggcgcctgtgctcgagtacacacacacacacacacacacac
acacacacacacacacacacagacacacgcacgcacgcacgcacgtacac
aaccctctgcttccaacccacgttcaagtcaggcatcagattcaatgaca
atggctttattggtggaataatgatcaatctgggacagacaatattgcct
ggccaaagtgtggaatgagctgcagctacagacagccacagtgaggggaa
atgggctctagagcctttacaaggcacttccacaataaggagtaacacgc
agtgtgaccgtttgtaggatatacccttgtgttgataagttttacaataa
agcgcatatgcatatatagtgtcccccagaaggttgttataacctggggg
atggggggcagggcatcatttgttgaaggctgggtgggaaggagaaagca
aagcagaagcctaaggggttttcctgccaagctgggggggaaaaggtaaa
agggt
gaattctttcttggcattaaaaggcccagagtggtggcacaggggaacta
ctattgagtttccccatttggaaacctccttccaagccaagcaggtctgt
tatctgtgaaagaaaagaaacaactttactccgataggaaggaagtcctg
tctggagatccggcctgtggactaggaggtggctggctgagaaacacaca
cacacacacacacacacacacacactgctacctctagagctgctgctgtg
ggagttttggagtattgatgaaggccttagagttcacagatgtctaaggc
agaggcagagaatctgcaactcccaagagctccaaacttttttatttttt
tcttttggtttttcgagacagggttgctctgtgtagccctggctgtcctg
gaactcactctgtagaccaggctggctcgaactcagaaatccccctgcct
cccaagtgctgagattaaaggcatgcgccaccactgcctgacttttgtga
aaatctaccagcctctgccctttgagtgctggatttaaaggaatatgccc
cgggccaggcttcaattcttccgtcttacagcctggggggaattgaattc
aattcctaattctcccaattgctgggattactgctgcataaccaaaaagc
aaaacaacaacaacaaaaactgagggaaggttattttgtttgagacaggg
tttttcagactgactgctcttccgaaggtcctgagtcaaatctcaacaac
cacatggtgggctcaccaccaccgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_140391172_140392106
seq2: B6Ng01-175L14.b_44_998 (reverse)

seq1  ACCCTTT--CCCTTTTCCCCCCAGC-TGGC-TGTAAACCCCT--GGGCTC  44
      |||||||  || ||| ||||||||| ||||  | ||||||||  ||  ||
seq2  ACCCTTTTACCTTTTCCCCCCCAGCTTGGCAGGAAAACCCCTTAGGCTTC  50

seq1  TGC-TTGCTTTCTCCT--CCACCCAGCC-TCAAC-AATGCTGCCCTG-CC  88
      ||| ||||||||||||  |||||||||| ||||| |||| ||||||| ||
seq2  TGCTTTGCTTTCTCCTTCCCACCCAGCCTTCAACAAATGATGCCCTGCCC  100

seq1  CCCAT-CCCCAGGTT-TAACAGCCTTCT-GGGGACACT-TATATGCATAT  134
      ||||| ||||||||| ||||| |||||| ||||||||| |||||||||||
seq2  CCCATCCCCCAGGTTATAACAACCTTCTGGGGGACACTATATATGCATAT  150

seq1  GCGC-TTATTGTAAAACTTATCAACACAA-GGTATATCCTAC-AACGGTC  181
      |||| |||||||||||||||||||||||| |||||||||||| |||||||
seq2  GCGCTTTATTGTAAAACTTATCAACACAAGGGTATATCCTACAAACGGTC  200

seq1  ACACTGCGTGTTACTCCTTATTGTGG-AGTGCCTTGTAAAGGCTCTAGAG  230
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACACTGCGTGTTACTCCTTATTGTGGAAGTGCCTTGTAAAGGCTCTAGAG  250

seq1  CCCATTTCCCCTCACTGTGGCTGTCTGTAGCTGCAGCTCATTCCACACTT  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTCCCCTCACTGTGGCTGTCTGTAGCTGCAGCTCATTCCACACTT  300

seq1  TGGCCAGGCAATATTGTCTGTCCCAGATTGATCATTATTCCACCAATAAA  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGGCAATATTGTCTGTCCCAGATTGATCATTATTCCACCAATAAA  350

seq1  GCCATTGTCATTGAATCTGATGCCTGACTTGAACGTGGGTTGGAAGCAGA  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGTCATTGAATCTGATGCCTGACTTGAACGTGGGTTGGAAGCAGA  400

seq1  GGGTTGTGTACGTGCGTGCGTGCGTGCGTGTGTCTGTGTGTGTGTGTGTG  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTGTACGTGCGTGCGTGCGTGCGTGTGTCTGTGTGTGTGTGTGTG  450

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTCGAGCACAGGCGCCTAGT  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTCGAGCACAGGCGCCTAGT  500

seq1  GCCTAGTGTCTCCCCTTCCTTCAGGACTTGAGCAACTTCGCAGAGTCAGT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTGTCTCCCCTTCCTTCAGGACTTGAGCAACTTCGCAGAGTCAGT  550

seq1  GCTGGAAGCTGTGCTGATTTGAATGAGAATGCCCTTCAGTGGGTCCTATA  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGCTGTGCTGATTTGAATGAGAATGCCCTTCAGTGGGTCCTATA  600

seq1  TTCTGAAAGCTTGATCCTCAGTTGGTAGAAGGATTAGGAGGCGGAGCCTC  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAGCTTGATCCTCAGTTGGTAGAAGGATTAGGAGGCGGAGCCTC  650

seq1  GGGGCGGGGCCCGGGAGGTGTGGCCTCAGGGAGGTGTGCCACTGGGGCTG  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGGGGCCCGGGAGGTGTGGCCTCAGGGAGGTGTGCCACTGGGGCTG  700

seq1  GCCTTGGAGGCTTCTAAAAGCCTGGCACTTCCCAGTTCTCTCTCCTTTTC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGAGGCTTCTAAAAGCCTGGCACTTCCCAGTTCTCTCTCCTTTTC  750

seq1  GGTCTTCTGTTTGAGGATCAGGTTGTAAACGCTCGGATGCTGCACCAGCA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCTGTTTGAGGATCAGGTTGTAAACGCTCGGATGCTGCACCAGCA  800

seq1  CCATGCCTGTCTGGATGCTTGCCATGCTCCCTGCCACCAGGGTCCTAGAC  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCTGTCTGGATGCTTGCCATGCTCCCTGCCACCAGGGTCCTAGAC  850

seq1  TCTACTGCTCTGAAACCAGGGGCCCCAAATTAAACACTTTCTTATATAAG  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGCTCTGAAACCAGGGGCCCCAAATTAAACACTTTCTTATATAAG  900

seq1  TTGCTTTTGGTCATGGTCACAGCACCAGAAGACAGAAAGACCCACCTTTG  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTGGTCATGGTCACAGCACCAGAAGACAGAAAGACCCACCTTTG  950

seq1  AATTC  935
      |||||
seq2  AATTC  955

seq1: chr4_140249496_140250268
seq2: B6Ng01-175L14.g_67_841

seq1  GAATTCTTTCTTGGCATTAAAAGGCCCAGAGTGGTGGCACAGGGGAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTGGCATTAAAAGGCCCAGAGTGGTGGCACAGGGGAACTA  50

seq1  CTATTGAGTTTCCCCATTTGGAAACCTCCTTCCAAGCCAAGCAGGTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAGTTTCCCCATTTGGAAACCTCCTTCCAAGCCAAGCAGGTCTGT  100

seq1  TATCTGTGAAAGAAAAGAAACAACTTTACTCCGATAGGAAGGAAGTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGAAAGAAAAGAAACAACTTTACTCCGATAGGAAGGAAGTCCTG  150

seq1  TCTGGAGATCCGGCCTGTGGACTAGGAGGTGGCTGGCTGAGAAACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGATCCGGCCTGTGGACTAGGAGGTGGCTGGCTGAGAAACACACA  200

seq1  CACACACACACACACACACACACACTGCTACCTCTAGAGCTGCTGCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACTGCTACCTCTAGAGCTGCTGCTGTG  250

seq1  GGAGTTTTGGAGTATTGATGAAGGCCTTAGAGTTCACAGATGTCTAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTTGGAGTATTGATGAAGGCCTTAGAGTTCACAGATGTCTAAGGC  300

seq1  AGAGGCAGAGAATCTGCAACTCCCAAGAGCTCCAAACTTTTTTATTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGAGAATCTGCAACTCCCAAGAGCTCCAAACTTTTTTATTTTTT  350

seq1  TCTTTTGGTTTTTCGAGACAGGGTTGCTCTGTGTAGCCCTGGCTGTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGTTTTTCGAGACAGGGTTGCTCTGTGTAGCCCTGGCTGTCCTG  400

seq1  GAACTCACTCTGTAGACCAGGCTGGCTCGAACTCAGAAATCCCCCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGTAGACCAGGCTGGCTCGAACTCAGAAATCCCCCTGCCT  450

seq1  CCCAAGTGCTGAGATTAAAGGCATGCGCCACCACTGCCTGACTTTTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGCTGAGATTAAAGGCATGCGCCACCACTGCCTGACTTTTGTGA  500

seq1  AAATCTACCAGCCTCTGCCC-TTGAGTGCTGGA-TTAAAGGAATATGCCC  548
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  AAATCTACCAGCCTCTGCCCTTTGAGTGCTGGATTTAAAGGAATATGCCC  550

seq1  CGGGCCAGGCTTCAATTCTTCCGTCTTACAGCCTGGGGGGAATTGAATTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCCAGGCTTCAATTCTTCCGTCTTACAGCCTGGGGGGAATTGAATTC  600

seq1  AATTCCTAATTCTCCCAATTGCTGGGATTACTGCTGCATAACCAAAAAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTAATTCTCCCAATTGCTGGGATTACTGCTGCATAACCAAAAAGC  650

seq1  AAAACAACAACAACAAAAACTGAGGGAAGGTTATTTTGTTTGAGACAGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACAACAACAAAAACTGAGGGAAGGTTATTTTGTTTGAGACAGGG  700

seq1  TTTTTCAGACTGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCTCAACAA  748
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTTTCAGACTGACTGCTCTTCCGAAGGTCCTGAG-TCAAATCTCAACAA  749

seq1  CCACATGGT-GGCTCACAACCACCGG  773
      ||||||||| ||||||| ||||||||
seq2  CCACATGGTGGGCTCACCACCACCGG  775