BAC Information

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BAC

Clone NameB6Ng01-175L20
Chromosome4 (Build37)
Map Location 71,219,729 - 71,350,719
singlet/doubletdoublet
Overlap geneLOC667638
Upstream geneLOC100039565, LOC100039979
Downstream geneEG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175L20.bB6Ng01-175L20.g
ACCGA003465GA003466
length1,0721,005
definitionB6Ng01-175L20.b B6Ng01-175L20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,349,651 - 71,350,719)(71,219,729 - 71,220,501)
sequence
gaattcatttttctagttgactctaacatattgttcttgttagatatgtt
atatctaacaagaacagcagtctactttaatttatattgctgtaataaat
taataaatctaacagcagtctactttaatttatattgctgtaataaatta
ctaaaatttttattcctatttataagataagaaatatatacttgcatatg
tattgagccagagtacttctagtgtgcattgggctttacataatgtgttt
gaatgtattatgaggttatatagaaattgttatatagatgttattatttt
gtgacttgttaactggatagctctggataagtcatctcacatataaatca
agagggacaattttattgtgatggctaactgaagtattgcttaattgaga
gaaggtcaagagtgtaggtgaacctttataatactgccactttgtagtct
aaggtaagtggactacaagactgagataaggttgagctatataatgatat
tctattgagaaagggacagatgagggaaaaaaacaatggaatagagagtt
ttcttttttttttcacttgacaaataatgattttatttgatttcgaatag
tgattttagatttatgcagtaattattactctattgaaatctgttttgag
acagggtctttctatatagctgtaactacctggaattcactacatagggt
aggctgggttggaaatcatagagatctatctgcctgcctctacctcctgg
aattaaaggcatatgttgccacacccagcttatttttattattttttttc
agtcaaagtatcactatataacattggctgggcagggaaactcatagaga
ttgatacacatgctctctgccctaatagagagttttctaactatttagaa
attttttaaattatcagacatagtctttagaattttcatctttgcaatct
ccctcttctcaaactttgtcttataagtagttacccaacttttctatgtc
atgatatgcacatctacataaatatcattacttttgtaatctgacctact
cactaaaatgtttacgataaaa

gaattccacccagttaagtttattgtttgtgcttaacaaagacaggaaaa
ttccagaattcctttgcaatggtttgtttggttgttttgtttttgtttgt
ttttttagtgcttgctggctctttctaagaatcagaggactggggtcaag
gaatactgataacgaaaagggaatctggagtaaatatctgaattgatatg
taaataatagaccaggacttggtctgcaagagtttagatatctgcatggg
ctgtctggggacatcctgagaatgcttgctgaggtggagcctcagcatga
ggaaggtcctgagaaaggaatgactgagaggcactgattgaatagtgact
cagtcaggagtagatgcaagctagcagttcaggtaatctctctgctccct
gaagattctcatcattctttcttctcctttctcatcattctttagtgttc
tcccaaccagaaagcctgaaccctgtcttttatttactaaagctacatca
tcaaggctttgataattgttagtaatcttcaaaatttcttaaatttacat
aaattctatgaaccccgatccatagtttcaacctctgcttccttagagca
gaaactgaacacaaagcagaagcccgtttccttacagatttacacatctt
attcttcaccggtagctgagtgcaactcctgcagtttcctggttcagcag
atagcagtctttagtaactattttcatgtaagaacatagagataacaggc
tactacatttaaaatgattcattacaaagttttaaattttttttaaatac
acagtaagttttctctaatattttttccaggcattgtcatgttcaatttc
ttcaaatagctcagagaccatagaagtatctttttttatatgcttccata
ctatcttttaattctctgatctttccatagcctcatatactctccttcta
atactatttattcttaatcatacataaatttcctattttattgtatccat
atgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_71349651_71350719
seq2: B6Ng01-175L20.b_44_1115 (reverse)

seq1  TTTTATCTGTAAACATTTTTAAGTGAGTAGGTCAGATTACAAAAGTTAAA  50
      ||||||| |||||||||||  |||||||||||||||||||||||||  ||
seq2  TTTTATC-GTAAACATTTT--AGTGAGTAGGTCAGATTACAAAAGT--AA  45

seq1  TGATATTTATGTAGATTGTGCATATCATTGACATAGAAAAGTTGGGTAAC  100
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TGATATTTATGTAGA-TGTGCATATCA-TGACATAGAAAAGTTGGGTAAC  93

seq1  TACTTATAAGAC-AAGTTTGAGAAG-GGGAGATTTGCAAAGATG-AAATT  147
      |||||||||||| |||||||||||| |||||| ||||||||||| |||||
seq2  TACTTATAAGACAAAGTTTGAGAAGAGGGAGA-TTGCAAAGATGAAAATT  142

seq1  CT-AAGACTATGTCTGATAATTT-AAAAATTTCTAAATAGTTAGAAAACT  195
      || |||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTAAAGACTATGTCTGATAATTTAAAAAATTTCTAAATAGTTAGAAAACT  192

seq1  CTCTATTA-GGCAGAG-GCATGTGTATCAATCTCTATGAG-TTCCCTG-C  241
      |||||||| ||||||| ||||||||||||||||||||||| ||||||| |
seq2  CTCTATTAGGGCAGAGAGCATGTGTATCAATCTCTATGAGTTTCCCTGCC  242

seq1  CAGCCAATGTTATATAGTGATACTTTGACTG-AAAAAAATAAT-AAAATA  289
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  CAGCCAATGTTATATAGTGATACTTTGACTGAAAAAAAATAATAAAAATA  292

seq1  AGCTGGGTGTGGCAACATATGCCTTTAATTCCAGGAGGTAGAGGCAGGCA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGTGTGGCAACATATGCCTTTAATTCCAGGAGGTAGAGGCAGGCA  342

seq1  GATAGATCTCTATGATTTCCAACCCAGCCTACCCTATGTAGTGAATTCCA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATCTCTATGATTTCCAACCCAGCCTACCCTATGTAGTGAATTCCA  392

seq1  GGTAGTTACAGCTATATAGAAAGACCCTGTCTCAAAACAGATTTCAATAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTACAGCTATATAGAAAGACCCTGTCTCAAAACAGATTTCAATAG  442

seq1  AGTAATAATTACTGCATAAATCTAAAATCACTATTCGAAATCAAATAAAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATAATTACTGCATAAATCTAAAATCACTATTCGAAATCAAATAAAA  492

seq1  TCATTATTTGTCAAGTGAAAAAAAAAAGAAAACTCTCTATTCCATTGTTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTTGTCAAGTGAAAAAAAAAAGAAAACTCTCTATTCCATTGTTT  542

seq1  TTTTCCCTCATCTGTCCCTTTCTCAATAGAATATCATTATATAGCTCAAC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTCATCTGTCCCTTTCTCAATAGAATATCATTATATAGCTCAAC  592

seq1  CTTATCTCAGTCTTGTAGTCCACTTACCTTAGACTACAAAGTGGCAGTAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTCAGTCTTGTAGTCCACTTACCTTAGACTACAAAGTGGCAGTAT  642

seq1  TATAAAGGTTCACCTACACTCTTGACCTTCTCTCAATTAAGCAATACTTC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGGTTCACCTACACTCTTGACCTTCTCTCAATTAAGCAATACTTC  692

seq1  AGTTAGCCATCACAATAAAATTGTCCCTCTTGATTTATATGTGAGATGAC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGCCATCACAATAAAATTGTCCCTCTTGATTTATATGTGAGATGAC  742

seq1  TTATCCAGAGCTATCCAGTTAACAAGTCACAAAATAATAACATCTATATA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAGAGCTATCCAGTTAACAAGTCACAAAATAATAACATCTATATA  792

seq1  ACAATTTCTATATAACCTCATAATACATTCAAACACATTATGTAAAGCCC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTCTATATAACCTCATAATACATTCAAACACATTATGTAAAGCCC  842

seq1  AATGCACACTAGAAGTACTCTGGCTCAATACATATGCAAGTATATATTTC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACACTAGAAGTACTCTGGCTCAATACATATGCAAGTATATATTTC  892

seq1  TTATCTTATAAATAGGAATAAAAATTTTAGTAATTTATTACAGCAATATA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTATAAATAGGAATAAAAATTTTAGTAATTTATTACAGCAATATA  942

seq1  AATTAAAGTAGACTGCTGTTAGATTTATTAATTTATTACAGCAATATAAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGTAGACTGCTGTTAGATTTATTAATTTATTACAGCAATATAAA  992

seq1  TTAAAGTAGACTGCTGTTCTTGTTAGATATAACATATCTAACAAGAACAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTAGACTGCTGTTCTTGTTAGATATAACATATCTAACAAGAACAA  1042

seq1  TATGTTAGAGTCAACTAGAAAAATGAATTC  1069
      ||||||||||||||||||||||||||||||
seq2  TATGTTAGAGTCAACTAGAAAAATGAATTC  1072


seq1: chr4_71219729_71220501
seq2: B6Ng01-175L20.g_65_837

seq1  GAATTCCACCCAGTTAAGTTTATTGTTTGTGCTTAACAAAGACAGGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCAGTTAAGTTTATTGTTTGTGCTTAACAAAGACAGGAAAA  50

seq1  TTCCAGAATTCCTTTGCAATGGTTTGTTTGGTTGTTTTGTTTTTGTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAATTCCTTTGCAATGGTTTGTTTGGTTGTTTTGTTTTTGTTTGT  100

seq1  TTTTTTAGTGCTTGCTGGCTCTTTCTAAGAATCAGAGGACTGGGGTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGTGCTTGCTGGCTCTTTCTAAGAATCAGAGGACTGGGGTCAAG  150

seq1  GAATACTGATAACGAAAAGGGAATCTGGAGTAAATATCTGAATTGATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTGATAACGAAAAGGGAATCTGGAGTAAATATCTGAATTGATATG  200

seq1  TAAATAATAGACCAGGACTTGGTCTGCAAGAGTTTAGATATCTGCATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATAGACCAGGACTTGGTCTGCAAGAGTTTAGATATCTGCATGGG  250

seq1  CTGTCTGGGGACATCCTGAGAATGCTTGCTGAGGTGGAGCCTCAGCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGGGGACATCCTGAGAATGCTTGCTGAGGTGGAGCCTCAGCATGA  300

seq1  GGAAGGTCCTGAGAAAGGAATGACTGAGAGGCACTGATTGAATAGTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTCCTGAGAAAGGAATGACTGAGAGGCACTGATTGAATAGTGACT  350

seq1  CAGTCAGGAGTAGATGCAAGCTAGCAGTTCAGGTAATCTCTCTGCTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGGAGTAGATGCAAGCTAGCAGTTCAGGTAATCTCTCTGCTCCCT  400

seq1  GAAGATTCTCATCATTCTTTCTTCTCCTTTCTCATCATTCTTTAGTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTCTCATCATTCTTTCTTCTCCTTTCTCATCATTCTTTAGTGTTC  450

seq1  TCCCAACCAGAAAGCCTGAACCCTGTCTTTTATTTACTAAAGCTACATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACCAGAAAGCCTGAACCCTGTCTTTTATTTACTAAAGCTACATCA  500

seq1  TCAAGGCTTTGATAATTGTTAGTAATCTTCAAAATTTCTTAAATTTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCTTTGATAATTGTTAGTAATCTTCAAAATTTCTTAAATTTACAT  550

seq1  AAATTCTATGAACCCCGATCCATAGTTTCAACCTCTGCTTCCTTAGAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTATGAACCCCGATCCATAGTTTCAACCTCTGCTTCCTTAGAGCA  600

seq1  GAAACTGAACACAAAGCAGAAGCCCGTTTCCTTACAGATTTACACATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAACACAAAGCAGAAGCCCGTTTCCTTACAGATTTACACATCTT  650

seq1  ATTCTTCACCGGTAGCTGAGTGCAACTCCTGCAGTTTCCTGGTTCAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCACCGGTAGCTGAGTGCAACTCCTGCAGTTTCCTGGTTCAGCAG  700

seq1  ATAGCAGTCTTTAGTAACTATTTTCATGTAAGAACATAGAGATAACAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGTCTTTAGTAACTATTTTCATGTAAGAACATAGAGATAACAGGC  750

seq1  TACTACATTTAAAATGATTCATT  773
      |||||||||||||||||||||||
seq2  TACTACATTTAAAATGATTCATT  773


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