BAC Information

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BAC

Clone NameB6Ng01-176D05
Chromosome4 (Build37)
Map Location 146,822,175 - 146,823,214
singlet/doubletsinglet
Overlap genenone
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701
Downstream geneOTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176D05.bB6Ng01-176D05.g
ACCGA003801GA003802
length6281,057
definitionB6Ng01-176D05.b B6Ng01-176D05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttctttagatctgagccccattttttaatagggttatttgatt
ttctgaagtccaccttcttgagttctttatatatattggataatagtcgc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcca
ttttgtcttatagacggtgtcttttgccttatagaagctttgcagtttta
tgaggtcccatttgtcaattctctatcttacagcacaagccattgctctt
ctattcaggcatttctcccctgtgcccatatttcgaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtggagttccttggt
ccacttagatttgaccttagtacaaggagataggaatggatcaattcgca
ttcttctacatgataacaaccagttgtgccagaaccatttgttgaaaatg
ctgtcttaacattatgaactaaccagtaccctggagctcttgactctagc
tgcatatgtatcaaaagatggcctagtcggccatcactggaaagagaggc
ccattggacacgcaaactttatataccccagtacaggggaacgccagggc
caaaaagggggagtgggtgggtagggga
gaattcttctaagcccacctacttatgtaccttttaattaattagcttcc
cacttcttcacagcaatttttgtttttttggatttttgcttgcttgcttc
cttgcttgcttgcttgttcctttgcttttaattttccttttcttaaactc
atctaatcgtgcaggaatcccacactccccatcaggaaccactcctccaa
ctctgttgccttccacacaactctccaggacctactctgcacagcttctt
cacaaagttgctgccagactagaccagagctggatgtagtaggacactgc
acctgggttctgaacccttcagatacaatggatcctgtctaacttctcat
attgtgcgtgtagccttctgggctataaatgcaaaaaattaagcagtccc
tttgaactctgatgctcagaacagatacccaaaacaaacaaaaacgtaga
taaaatgtccttggctcaaaccacaaaccatagaggtatccaataaggag
cacaatttatgtgatacccaagacaaagaattgaaaacccacagtcatga
tcaagggcattaaagtttgtaaaccatgtgaatccactcagacaggaaca
aaatgaatcttgggtaagaaaataataccagatgcctgaaggaaataagg
acaatataaaatattaaaattgagttcaataggtggttagaaatgccaaa
aaaagaaaaatcctgaagagaaaatgcactgaggcaaataaaattgatac
atagagaacctgtgggagacagattatcagacttaaagaaaaagtagagg
aggtggatgcctcaatcaaagaaaatggtgaattaaaatgatgttaggtc
aaggcacaatattatttactgcttgaaggatgaggcaataaagagaaact
ccttcgaaaactgtcctgatctttgtcaaaaaaaaaaaaagtaggaaagg
agtagaggagaaagagagagagagagagagaagagagagaggagagagag
agaagagaagactaagatgagatgaggaagagagagagagagagagagag
agtagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146822175_146823214
seq2: B6Ng01-176D05.g_64_1120 (reverse)

seq1  -----CTCTCTCTCTCTCTCTCTCTCTCT--CTC-TCTC-------TCTT  35
           ||||||||||||||||||||||||  ||| ||||       ||||
seq2  CTCTACTCTCTCTCTCTCTCTCTCTCTCTTCCTCATCTCATCTTAGTCTT  50

seq1  CTC-TCTCTCTCTC-CCTCTCTCTCTT-----TCTCTCTCTTTCTTCCTT  78
      ||| |||||||||| ||||||||||||     ||||||||| |||| || 
seq2  CTCTTCTCTCTCTCTCCTCTCTCTCTTCTCTCTCTCTCTCTCTCTTTCTC  100

seq1  CT-TACTTCCTTTCCTTACTTTTTTTTTTTTTTTGACAAAGATCAGGACA  127
      || ||| |||||||| |||  |||||||||||||||||||||||||||||
seq2  CTCTAC-TCCTTTCC-TAC--TTTTTTTTTTTTTGACAAAGATCAGGACA  146

seq1  GTTTTTCGAAGGAGTTTCTCTTTATTGCCTCATCCTTCAAGCAGTAAATA  177
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TTTTCGAAGGAGTTTCTCTTTATTGCCTCATCCTTCAAGCAGTAAATA  195

seq1  ATATTGTGCCTTGACCTAACATCATTTTAATTCACCATTTTCTTTGATTG  227
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTGCCTTGACCTAACATCATTTTAATTCACCATTTTCTTTGATTG  245

seq1  AGGCATCCACCTCCTCTACTTTTTCTTTAAGTCTGATAATCTGTCTCCCA  277
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCCACCTCCTCTACTTTTTCTTTAAGTCTGATAATCTGTCTCCCA  295

seq1  CAGGTTCTCTATGTATCAATTTTATTTGCCTCAGTGCATTTTCTCTTCAG  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCTCTATGTATCAATTTTATTTGCCTCAGTGCATTTTCTCTTCAG  345

seq1  GATTTTTCTTTTTTTAGCATTTCTAACCACCTATTGAACTCAATTTTAAT  377
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GATTTTTCTTTTTTTGGCATTTCTAACCACCTATTGAACTCAATTTTAAT  395

seq1  ATTTTATATTGTCCTTATTTCCTTCAGGCATCTGGTATTATTTTCTTACC  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATATTGTCCTTATTTCCTTCAGGCATCTGGTATTATTTTCTTACC  445

seq1  CAAGATTCATTTTGTTCCTGTCTGAGTGGATTCACATGGTTTACAAACTT  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTCATTTTGTTCCTGTCTGAGTGGATTCACATGGTTTACAAACTT  495

seq1  TAATGCCCTTGATCATGACTGTGGGTTTTCAATTCTTTGTCTTGGGTATC  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCCTTGATCATGACTGTGGGTTTTCAATTCTTTGTCTTGGGTATC  545

seq1  ACATAAATTGTGCTCCTTATTGGATACCTCTATGGTTTGTGGTTTGAGCC  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATTGTGCTCCTTATTGGATACCTCTATGGTTTGTGGTTTGAGCC  595

seq1  AAGGACATTTTATCTACGTTTTTGTTTGTTTTGGGTATCTGTTCTGAGCA  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATTTTATCTACGTTTTTGTTTGTTTTGGGTATCTGTTCTGAGCA  645

seq1  TCAGAGTTCAAAGGGACTGCTTAATTTTTTGCATTTATAGCCCAGAAGGC  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTCAAAGGGACTGCTTAATTTTTTGCATTTATAGCCCAGAAGGC  695

seq1  TACACGCACAATATGAGAAGTTAGACAGGATCCATTGTATCTGAAGGGTT  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGCACAATATGAGAAGTTAGACAGGATCCATTGTATCTGAAGGGTT  745

seq1  CAGAACCCAGGTGCAGTGTCCTACTACATCCAGCTCTGGTCTAGTCTGGC  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCCAGGTGCAGTGTCCTACTACATCCAGCTCTGGTCTAGTCTGGC  795

seq1  AGCAACTTTGTGAAGAAGCTGTGCAGAGTAGGTCCTGGGGAGTTGTGTGG  827
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGCAACTTTGTGAAGAAGCTGTGCAGAGTAGGTCCTGGAGAGTTGTGTGG  845

seq1  AAGGCAACAGAGTTGGAGGAGTGGTTCCTGATGGGGAGTGTGGGATTCCT  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAACAGAGTTGGAGGAGTGGTTCCTGATGGGGAGTGTGGGATTCCT  895

seq1  GCACGATTAGATGAGTTTAAGAAAAAGAAAAATTAAAAGCAAAGGAACAA  927
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  GCACGATTAGATGAGTTTAAG-AAAAGGAAAATTAAAAGCAAAGGAACAA  944

seq1  GCAAGCAAGCAAGGAAGCAAGCAAGCAAAAATCCAAAAAAACAAAAATTG  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAAGCAAGGAAGCAAGCAAGCAAAAATCCAAAAAAACAAAAATTG  994

seq1  CTGTGAAGAAGTGGGAAGCTAATTAATTAAAAGGTACATAAGTAGGTGGG  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAGAAGTGGGAAGCTAATTAATTAAAAGGTACATAAGTAGGTGGG  1044

seq1  CTTAGAAGAATTC  1040
      |||||||||||||
seq2  CTTAGAAGAATTC  1057