BAC Information

Click to search

BAC

Clone NameB6Ng01-177G01
Chromosome4 (Build37)
Map Location 146,083,744 - 146,084,696
singlet/doubletsinglet
Overlap geneMGC117846
Upstream geneLOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445
Downstream geneOTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177G01.bB6Ng01-177G01.g
ACCGA004664GA004665
length1,109958
definitionB6Ng01-177G01.b B6Ng01-177G01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgatgaatattaagatgagatttttgggtaaagcatttgtca
cattcactacatttgtaaggtttctctcctgtatgaattctctgatgaat
attaagatgaaatttgtgggtaaagcatttgtcacattcactacatttat
aaattttctcttctgcatgaattccctgatggatactaagatcgatctga
tgggtaaagcatttgtcacttttactacttctgtaatgtttcttttcatg
ataaattctctgctgactttgaagtttgtctctctgggtaagatatttgt
caaatttactacatttgtaagggttcactccagtattatttcgtttcacc
atgactttatgtttagaaataaaagccttctcagattctgcatttccgtt
gtgttttttcttctgcatgtggattccctgattgagactaatggtagaaa
acaaagttaaactgtttacagagtcattgtatttgcaaacttctttagtg
ttcctgggcttaagtcttttttggttcgaaaattgaagagcatcagaggt
gtgattagttttgtaaggtgtacattggggggcttcaagtatcacattgc
taagtttgtcccatttagaagacttctcttgaatattcatgtgttcatgg
acaatgtactggctgtcttgatccaagaccttctcatactttccacatat
gcaatgattttctgaaaaaaagtagggaggggcaattagaggtgacatga
attacttatataaggagtaagtgattcaataatcagtgatctcatggatt
cgtactctcaagagaggtttttctcctttttttgaatcattacatgtatc
ctcaaaagaacttcaaatatggtctatatcaaatgattggaaatgatagt
aacctgctaaatttcagtttcaaattggacatcatacccacctcaaatat
aataacccagaattgctcctcgtgtttagaaaaagagggaaaaattggta
aaagaggctgaatgtaagccatccagagactggaaccaaagagaatgcag
atccctgcagccaccattagactgtacaagggctacatgaaggagtagag
gactgaaga
gaattctctctctgaaaggcaaccttaaatccaaccagaatatgttttac
tgtaatttatttttgtctgttgctttcataaagcaccatgttcaaggaaa
ttaatagaagaaaaagactactttgggtaatgcttccagaggatagccat
caaccatgacagggaggactgatagaacatagccatgttgttgaagtaga
aaggtgaaagatctgaaagatcacatcctcaaccccagtcactaaaaagg
aacagagaattaagatgacttggatctatctattcttttttctcatagcc
aacccccagtgtcatactttattcagtaatgttccaacaactaaattcct
caaaacattgtgacccactgaggatccaactttaaacgataaaagtacta
tccaatgggagatttattctttcatacctatataatcagccttctaatat
ccttgtgctttttaaattgattttgatatcaatgtagaaaacaaagccct
aatttcttgtatgggtttcctgctcttttgtttgtttttaaaacagggtc
ccacactctagtcctgactttcacatgtcctgatatagagaccagaatgg
cttttaggtcacatccctgagagctaggatgaaagacctttcattgacga
gctgatttttatttatttatttatttatttatttatttatttatttattt
atttatctatctatttatttttttttggctgaatgcagcgtcttcatata
ttggccactgagttaccaccaggcttaacagagttcatttcttgtttcat
ttcagagtgagcttccttagatttttatatctttggataaggtgttcacg
tcttgcatatgtataattattctcttacccaacttgtaggaattctctgg
aatttcattagttttgttttcttgcttcttgaaattcctgtgcttgtttc
ccctcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146083744_146084696
seq2: B6Ng01-177G01.g_63_1020

seq1  GAATTCTCTCTCTGAAAGGCAACCTTAAATCCAACCAGAATATGTTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCTGAAAGGCAACCTTAAATCCAACCAGAATATGTTTTAC  50

seq1  TGTAATTTATTTTTGTCTGTTGCTTTCATAAAGCACCATGTTCAAGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTATTTTTGTCTGTTGCTTTCATAAAGCACCATGTTCAAGGAAA  100

seq1  TTAATAGAAGAAAAAGACTACTTTGGGTAATGCTTCCAGAGGATAGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGAAGAAAAAGACTACTTTGGGTAATGCTTCCAGAGGATAGCCAT  150

seq1  CAACCATGACAGGGAGGACTGATAGAACATAGCCATGTTGTTGAAGTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATGACAGGGAGGACTGATAGAACATAGCCATGTTGTTGAAGTAGA  200

seq1  AAGGTGAAAGATCTGAAAGATCACATCCTCAACCCCAGTCACTAAAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAAAGATCTGAAAGATCACATCCTCAACCCCAGTCACTAAAAAGG  250

seq1  AACAGAGAATTAAGATGACTTGGATCTATCTATTCTTTTTTCTCATAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAATTAAGATGACTTGGATCTATCTATTCTTTTTTCTCATAGCC  300

seq1  AACCCCCAGTGTCATACTTTATTCAGTAATGTTCCAACAACTAAATTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCAGTGTCATACTTTATTCAGTAATGTTCCAACAACTAAATTCCT  350

seq1  CAAAACATTGTGACCCACTGAGGATCCAACTTTAAACGATAAAAGTACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATTGTGACCCACTGAGGATCCAACTTTAAACGATAAAAGTACTA  400

seq1  TCCAATGGGAGATTTATTCTTTCATACCTATATAATCAGCCTTCTAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGGGAGATTTATTCTTTCATACCTATATAATCAGCCTTCTAATAT  450

seq1  CCTTGTGCTTTTTAAATTGATTTTGATATCAATGTAGAAAACAAAGCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGCTTTTTAAATTGATTTTGATATCAATGTAGAAAACAAAGCCCT  500

seq1  AATTTCTTGTATGGGTTTCCTGCTCTTTTGTTTGTTTTTAAAACAGGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTGTATGGGTTTCCTGCTCTTTTGTTTGTTTTTAAAACAGGGTC  550

seq1  CCACACTCTAGTCCTGACTTTCACATGTCCTGATATAGAGACCAGAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTCTAGTCCTGACTTTCACATGTCCTGATATAGAGACCAGAATGG  600

seq1  CTTTTAGGTCACATCCCTGAGAGCTAGGATGAAAGACCTTTCATTGACGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGGTCACATCCCTGAGAGCTAGGATGAAAGACCTTTCATTGACGA  650

seq1  GCTGATTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT  700

seq1  ATTTATCTATCTATTTA-TTTTTTTTGGCTGAATGCAGCGTCTTCATATA  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATTTATCTATCTATTTATTTTTTTTTGGCTGAATGCAGCGTCTTCATATA  750

seq1  TTGGCCACTGAGTTACCACCAGGCTTAACAGAGTTCATTTCTTGTTTCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCACTGAGTTACCACCAGGCTTAACAGAGTTCATTTCTTGTTTCAT  800

seq1  TTCAGAGTGAGCTTTCCTTAGATTTTTATATCTTTGGATAAGGTGTTCAC  849
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTGAGC-TTCCTTAGATTTTTATATCTTTGGATAAGGTGTTCAC  849

seq1  GTCTTGCATATGTATAATTATTCTCTTACCC-ACTTGTAGGAATTCTCTG  898
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTCTTGCATATGTATAATTATTCTCTTACCCAACTTGTAGGAATTCTCTG  899

seq1  GAATTTCATTAAGTTTG-TTTCTGCCTTCTTG-AATTCCTGTGCTTGTT-  945
      |||||||||||  |||| |||||  ||||||| |||||||||||||||| 
seq2  GAATTTCATTAGTTTTGTTTTCTTGCTTCTTGAAATTCCTGTGCTTGTTT  949

seq1  -CCCTCTTT  953
       ||||||||
seq2  CCCCTCTTT  958