BAC Information

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BAC

Clone NameB6Ng01-177K20
Chromosome4 (Build37)
Map Location 122,818,314 - 122,967,508
singlet/doubletdoublet
Overlap geneHpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie
Downstream geneBmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177K20.bB6Ng01-177K20.g
ACCGA004878GA004879
length1,1321,058
definitionB6Ng01-177K20.b B6Ng01-177K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,818,314 - 122,819,020)(122,966,452 - 122,967,508)
sequence
gaattcactatgtaaaccaggctgaccttgaacttacagagatctcttcc
tgagggttgggactaaaagcatataccaccacaggaagctttgctgtatt
gttaaagggctctagcaggcccaagcttggtaagcacaggtgtggcaggc
cttgtccttctccccattccctctgccttgctaataaacaaacaaacaaa
cagggttatattcctaaagctagccgtaggccaaataaggtctattccct
tatttggcctcctcctgaggatgatcaccaaggtccagctatcaaagtat
taaagttcaacaattgtattagtcagggttctctagagtcacagaactgt
gggtagtctctatatagtaaaggaatttaatcttaatctttgatctccct
gtcttaatcttctgaaatccatagccactatgcctcaagatctccatact
gagatccaggtcagaaacttctatctctcagcctccagattagggtcact
gatgagccttccaattctggattgtagttcattccagatatagtcaagtt
gacaaccagaaatagccactacaacagtcaaatccccccttggcctaccc
taattaatacggtcaaccaaaacatgaccaccacatcctagccattctat
cacagattcccctctttttcctcttaaaaaaacatcacacccacaaggtc
atttgctgctgctgtctgcctgagcggagaacagtcactttcccctgctc
agtaaaggatctctctatggaaataggtgtttgagtgtggttttgtgcct
aacccagtgttcaagagggaacactgtgtgcgggtcccttcagttacggt
gctggagatcagacgtagagctgaagacccattcctcggcaaattattct
accactgatccatatcctcagctactgtaggcagagcatttagattttcc
tgaggtaacttttataaactttggtatttcaaatgtgtgtgtatacgcat
acttgtgaagccagaggacacttgatggagtagattcctctcctcctaca
gaatcaggttcaagattgcaggccagcgcctgttaccagctgagcactca
caggcccctggagggagactttagatggaagc
gaattccttggccttggctccaagctccgcttcccgctctttgcgagact
tgaatctacccacgaacctacgagaaaccacggatagcggcggttactca
ggaggaacagaacacgatttccgggggcccaaaggaatgcagattaaagg
ctgacaggagaggttaaaacgcacgaggaccccgtccaccacgagaacaa
gctcagatgccccaagtccccagcagaaaaaaaggaagaggcaggggctg
tcctgcaaggaccagtcccagggctcctggttccgaccagggccactcct
accacatcacactgccttcgtgatgaaacctgacgaccatgtttttaaaa
cggttcatttctgtgcatctatgtaaatgcatagaaaacctctggaagga
cacaagccaaactgttaacagtggttagcccagcagtgaggcagctgcaa
tcgggtgacctctgccctcccgctctaccacttggtaaccttaacaggaa
attatttccgcacacccgacacagacataaaacacagtcttgtctattct
acaccccagagaacagaaatgattgttgcctgtaatagccaaaatgcaaa
atgccttttcccacatggctctgcccccaaccccacagcagtgacaagac
cgtcatgcagtgtccccagaaagaggtggacttcatcgtaggccaattaa
atggatgacagtgaaatgttgttgcagttcggaggaaaagaactagagga
caatttggtgccaaaaactagcaagagccccacgggcagcaatgagtcaa
aggaaagaaagctgagtttgtgtagccaatatccagctcctggtcagccc
agggcctctccactctgccgctggccaagacccctgctcagagtgggctc
agagcgctctcctagccagccccacttgccgatgctcacaaaacccacag
atgaaatgccttaagggagaggcagcaaggcaggccatggcctcgggcag
gagcgactgtgcaagtcaaaagggcctgccgtggctcgggcaggagaact
caccagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_122818314_122819020
seq2: B6Ng01-177K20.b_472_1178

seq1  CACTATGCCTCAAGATCTCCATACTGAGATCCAGGTCAGAAACTTCTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGCCTCAAGATCTCCATACTGAGATCCAGGTCAGAAACTTCTATC  50

seq1  TCTCAGCCTCCAGATTAGGGTCACTGATGAGCCTTCCAATTCTGGATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCCTCCAGATTAGGGTCACTGATGAGCCTTCCAATTCTGGATTGT  100

seq1  AGTTCATTCCAGATATAGTCAAGTTGACAACCAGAAATAGCCACTACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTCCAGATATAGTCAAGTTGACAACCAGAAATAGCCACTACAAC  150

seq1  AGTCAAATCCCCCCTTGGCCTACCCTAATTAATACGGTCAACCAAAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAATCCCCCCTTGGCCTACCCTAATTAATACGGTCAACCAAAACAT  200

seq1  GACCACCACATCCTAGCCATTCTATCACAGATTCCCCTCTTTTTCCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCACATCCTAGCCATTCTATCACAGATTCCCCTCTTTTTCCTCTT  250

seq1  AAAAAAACATCACACCCACAAGGTCATTTGCTGCTGCTGTCTGCCTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACATCACACCCACAAGGTCATTTGCTGCTGCTGTCTGCCTGAGC  300

seq1  GGAGAACAGTCACTTTCCCCTGCTCAGTAAAGGATCTCTCTATGGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACAGTCACTTTCCCCTGCTCAGTAAAGGATCTCTCTATGGAAATA  350

seq1  GGTGTTTGAGTGTGG-TTTGTGCCTAACCCAGTGTTCAAGAGGGAACACT  399
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGTGTTTGAGTGTGGTTTTGTGCCTAACCCAGTGTTCAAGAGGGAACACT  400

seq1  GTGTGCGGGTCCCTTCAGTTACGGTGCTGGAGATCAGACGTAGAGCTGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCGGGTCCCTTCAGTTACGGTGCTGGAGATCAGACGTAGAGCTGAA  450

seq1  GA-CCATTCCTCGGCAAA-TATTCTACCACTGATCCATATCCTCAGCTAC  497
      || ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GACCCATTCCTCGGCAAATTATTCTACCACTGATCCATATCCTCAGCTAC  500

seq1  TGTAGGCAGAGCATTTAGATTTTCCTGAGGTAACTTTTATAAACTTTGTT  547
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGTAGGCAGAGCATTTAGATTTTCCTGAGGTAACTTTTATAAACTTTGGT  550

seq1  A-TTCAAATGTGTGTGTATACGCATACTTGTGGAAGCCAGAGGACAACTT  596
      | ||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  ATTTCAAATGTGTGTGTATACGCATACTTGT-GAAGCCAGAGGAC-ACTT  598

seq1  GATGGAGTAGATT-CTCTCCTCCTACCAGATCAGGTCCCAGGTTTGCAAG  645
      ||||||||||||| ||||||||||||   |||||||  || | |||| ||
seq2  GATGGAGTAGATTCCTCTCCTCCTACAGAATCAGGT-TCAAGATTGC-AG  646

seq1  GCAAGCG-CTGTTACCAGCTGAGCCACCTCACA-GCCCCTTGA-GGAGAC  692
      || |||| ||||||||||||||||   |||||| |||||| || ||||||
seq2  GCCAGCGCCTGTTACCAGCTGAGC--ACTCACAGGCCCCTGGAGGGAGAC  694

seq1  TTTTAAGATGGAAGC  707
      |||  ||||||||||
seq2  TTT--AGATGGAAGC  707

seq1: chr4_122966452_122967508
seq2: B6Ng01-177K20.g_67_1124 (reverse)

seq1  GGCTGGTGAGTCTCCCTGCCCGAGCCACGGCA-GCCCTTTTGACTTGCCA  49
      |||||||||||   |||||||||||||||||| |||||||||||||| ||
seq2  GGCTGGTGAGTTCTCCTGCCCGAGCCACGGCAGGCCCTTTTGACTTG-CA  49

seq1  CAGTCGGCTCCCTGCCCGA-GCCATGGCCTGCC-TGCTGCCTCTCCCTTA  97
      ||||| ||| ||||||||| ||||||||||||| ||||||||||||||||
seq2  CAGTC-GCT-CCTGCCCGAGGCCATGGCCTGCCTTGCTGCCTCTCCCTTA  97

seq1  AGGCA-TTCATCTGTGGGTTTTGTGAGCATCGGCAAGTGGGGCTGGCTAG  146
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTCATCTGTGGGTTTTGTGAGCATCGGCAAGTGGGGCTGGCTAG  147

seq1  GAGAGCGCTCTGAGCCCACTCTGAGCAGGGGTCTTGGCCAGCGGCAGAGT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCGCTCTGAGCCCACTCTGAGCAGGGGTCTTGGCCAGCGGCAGAGT  197

seq1  GGAGAGGCCCTGGGCTGACCAGGAGCTGGATATTGGCTACACAAACTCAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGCCCTGGGCTGACCAGGAGCTGGATATTGGCTACACAAACTCAG  247

seq1  CTTTCTTTCCTTTGACTCATTGCTGCCCGTGGGGCTCTTGCTAGTTTTTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCCTTTGACTCATTGCTGCCCGTGGGGCTCTTGCTAGTTTTTG  297

seq1  GCACCAAATTGTCCTCTAGTTCTTTTCCTCCGAACTGCAACAACATTTCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAAATTGTCCTCTAGTTCTTTTCCTCCGAACTGCAACAACATTTCA  347

seq1  CTGTCATCCATTTAATTGGCCTACGATGAAGTCCACCTCTTTCTGGGGAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATCCATTTAATTGGCCTACGATGAAGTCCACCTCTTTCTGGGGAC  397

seq1  ACTGCATGACGGTCTTGTCACTGCTGTGGGGTTGGGGGCAGAGCCATGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATGACGGTCTTGTCACTGCTGTGGGGTTGGGGGCAGAGCCATGTG  447

seq1  GGAAAAGGCATTTTGCATTTTGGCTATTACAGGCAACAATCATTTCTGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGCATTTTGCATTTTGGCTATTACAGGCAACAATCATTTCTGTT  497

seq1  CTCTGGGGTGTAGAATAGACAAGACTGTGTTTTATGTCTGTGTCGGGTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGTGTAGAATAGACAAGACTGTGTTTTATGTCTGTGTCGGGTGT  547

seq1  GCGGAAATAATTTCCTGTTAAGGTTACCAAGTGGTAGAGCGGGAGGGCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAAATAATTTCCTGTTAAGGTTACCAAGTGGTAGAGCGGGAGGGCAG  597

seq1  AGGTCACCCGATTGCAGCTGCCTCACTGCTGGGCTAACCACTGTTAACAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACCCGATTGCAGCTGCCTCACTGCTGGGCTAACCACTGTTAACAG  647

seq1  TTTGGCTTGTGTCCTTCCAGAGGTTTTCTATGCATTTACATAGATGCACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTGTGTCCTTCCAGAGGTTTTCTATGCATTTACATAGATGCACA  697

seq1  GAAATGAACCGTTTTAAAAACATGGTCGTCAGGTTTCATCACGAAGGCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAACCGTTTTAAAAACATGGTCGTCAGGTTTCATCACGAAGGCAG  747

seq1  TGTGATGTGGTAGGAGTGGCCCTGGTCGGAACCAGGAGCCCTGGGACTGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGTGGTAGGAGTGGCCCTGGTCGGAACCAGGAGCCCTGGGACTGG  797

seq1  TCCTTGCAGGACAGCCCCTGCCTCTTCCTTTTTTTCTGCTGGGGACTTGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCAGGACAGCCCCTGCCTCTTCCTTTTTTTCTGCTGGGGACTTGG  847

seq1  GGCATCTGAGCTTGTTCTCGTGGTGGACGGGGTCCTCGTGCGTTTTAACC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTGAGCTTGTTCTCGTGGTGGACGGGGTCCTCGTGCGTTTTAACC  897

seq1  TCTCCTGTCAGCCTTTAATCTGCATTCCTTTGGGCCCCCGGAAATCGTGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTCAGCCTTTAATCTGCATTCCTTTGGGCCCCCGGAAATCGTGT  947

seq1  TCTGTTCCTCCTGAGTAACCGCCGCTATCCGTGGTTTCTCGTAGGTTCGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCTCCTGAGTAACCGCCGCTATCCGTGGTTTCTCGTAGGTTCGT  997

seq1  GGGTAGATTCAAGTCTCGCAAAGAGCGGGAAGCGGAGCTTGGAGCCAAGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGATTCAAGTCTCGCAAAGAGCGGGAAGCGGAGCTTGGAGCCAAGG  1047

seq1  CCAAGGAATTC  1057
      |||||||||||
seq2  CCAAGGAATTC  1058