BAC Information

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BAC

Clone NameB6Ng01-177N08
Chromosome4 (Build37)
Map Location 22,330,081 - 22,425,324
singlet/doubletdoublet
Overlap geneFbxl4, Pou3f2
Upstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379
Downstream geneLOC664911, 1700025O08Rik, LOC625462
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177N08.bB6Ng01-177N08.g
ACCGA004995GA004996
length1,017565
definitionB6Ng01-177N08.b B6Ng01-177N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,330,081 - 22,331,120)(22,424,763 - 22,425,324)
sequence
gaattcacacatgctacaggaacgagctccggtcggtcaccataggctga
caggtccggatcatgaggaacagtctagcctggcaggcagcccccccacc
ccaatgcagcctcactgcgcatgctcgggcaaggcagtaaacatcttggc
ccatgcggccgcacctgcttcctctttcaggatttcttaataaacctgtc
attactgtagataaagtatattaccccattctgaatgggcattgttaaga
gagtgatatatactgagagactagggttttagggtgtagattttccaact
tggatatgagttgcgggtaagcagaactatctccgctgtcatcttaattt
caacttagtattacctgactttgtaccatgttaatccatgtggattcatt
tttcttctcagcttgatttatttgagttagccatgatcatttcagcatgc
agtaagaacccagtgaatcgagttatgtatttcctttagtagaaatctgt
tctcttaactgtgtctgttaggaggtgatacaatttcaaagtttttacaa
aggtatcatttgattgtataaaatttccatggattattgtttccacaggt
ttctaaaggtgtgtgggtctgagttagtacgccttgagttatcctgcagc
cactttcttaatgacacttgcttggaggttatttctgaaatgtgcccaaa
tctacagacttaaatctctcatcctgcgataactcccacctcaggctttt
gggccatattgccaagttatgcagcctcaagaggcttgttctctatcgac
aaaagtagaggtagaataactcatattgtgttttcttataaaatatctgg
ctgaatagtaattgctttcaaatatattgtgatttctcattttaaacaga
gttgtgacatcatgtgtacccttccaatataagcattctttagtcacttc
agagtataactttaattgatgtcctgatcctggaagaaatggtaggtggg
acagtaccaatgctggc
cgaatttacagtctttaccccctaccccccccccccacacccccttcaat
cccatctcctggcgctgccgccacctgggaagctaactttcaggcccatt
gccttcctggaaaggtactccacccgggacagggcgttccgccagccact
acgaagtcctagcgtgctctgagcagtctgtggggaggcagtgaccgcca
ctggcccctatcctcttccaagtcctattggactctcgggacagttccac
ccggtggggtctggggcgggtggccaatctcctcccccactgttcacttt
ctcctctcgccccttcccccattcactgggacgcgtagaaacgctctcac
ttgcatgccctttagccctagacgcctgaaggtagctgaatggaaacact
gacacgtgaaaactctattctgagtgacttagaattggtcgccttgaggt
tttaatctttgcccctctggtcccgcccagcccttaagagcagctgtcct
gacgcagcctctgcggttcttgaggaaaggtgagggcgttgggaggcgca
ctgggacttgagcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_22330081_22331120
seq2: B6Ng01-177N08.b_48_1064

seq1  GAATTCACACATGCTACAGGAACGAGCTCCGGTCGGTCACCATAGGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACATGCTACAGGAACGAGCTCCGGTCGGTCACCATAGGCTGA  50

seq1  CAGGTCCGGATCATGAGGAACAGTCTAGCCTGGCAGGCAGCCCCCCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCGGATCATGAGGAACAGTCTAGCCTGGCAGGCAGCCCCCCCACC  100

seq1  CCAATGCAGCCTCACTGCGCATGCTCGGGCAAGGCAGTAAACATCTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCAGCCTCACTGCGCATGCTCGGGCAAGGCAGTAAACATCTTGGC  150

seq1  CCATGCGGCCGCACCTGCTTCCTCTTTCAGGATTTCTTAATAAACCTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCGGCCGCACCTGCTTCCTCTTTCAGGATTTCTTAATAAACCTGTC  200

seq1  ATTACTGTAGATAAAGTATATTACCCCATTCTGAATGGGCATTGTTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGTAGATAAAGTATATTACCCCATTCTGAATGGGCATTGTTAAGA  250

seq1  GAGTGATATATACTGAGAGACTAGGGTTTTAGGGTGTAGATTTTCCAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATATATACTGAGAGACTAGGGTTTTAGGGTGTAGATTTTCCAACT  300

seq1  TGGATATGAGTTGCGGGTAAGCAGAACTATCTCCGCTGTCATCTTAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATGAGTTGCGGGTAAGCAGAACTATCTCCGCTGTCATCTTAATTT  350

seq1  CAACTTAGTATTACCTGACTTTGTACCATGTTAATCCATGTGGATTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTAGTATTACCTGACTTTGTACCATGTTAATCCATGTGGATTCATT  400

seq1  TTTCTTCTCAGCTTGATTTATTTGAGTTAGCCATGATCATTTCAGCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTCAGCTTGATTTATTTGAGTTAGCCATGATCATTTCAGCATGC  450

seq1  AGTAAGAACCCAGTGAATCGAGTTATGTATTTCCTTTAGTAGAAATCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAACCCAGTGAATCGAGTTATGTATTTCCTTTAGTAGAAATCTGT  500

seq1  TCTCTTAACTGTGTCTGTTAGGAGGTGATACAATTTCAAAGTTTTTACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAACTGTGTCTGTTAGGAGGTGATACAATTTCAAAGTTTTTACAA  550

seq1  AGGTATCATTTGATTGTATAAAATTTCCATGGATTATTGTTTCCACAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATCATTTGATTGTATAAAATTTCCATGGATTATTGTTTCCACAGGT  600

seq1  TTCTAAAGGTGTGTGGGTCTGAGTTAGTACGCCTTGAGTTATCCTGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGGTGTGTGGGTCTGAGTTAGTACGCCTTGAGTTATCCTGCAGC  650

seq1  CACTTTCTTAATGACACTTGCTTGGAGGTTATTTCTGAAATGTGCCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCTTAATGACACTTGCTTGGAGGTTATTTCTGAAATGTGCCCAAA  700

seq1  TCTACAAGACTTAAATCTCTCATCCTGCGATAAACTCCCACCTCAGGCTT  750
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTAC-AGACTTAAATCTCTCATCCTGCGAT-AACTCCCACCTCAGGCTT  748

seq1  TT-GGCCATATTGCCAAGTTATGCAGCCTCAAGAGGCTTGTTCTCTATCG  799
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGGGCCATATTGCCAAGTTATGCAGCCTCAAGAGGCTTGTTCTCTATC-  797

seq1  GACAAAAGTAGAGGTAAGAATAACTCATATGTGT-TTTTCTTAATAAAAT  848
      ||||||||||||||| |||||||||||||| ||| ||||||| |||||||
seq2  GACAAAAGTAGAGGT-AGAATAACTCATAT-TGTGTTTTCTT-ATAAAAT  844

seq1  ATCTGGCTGAATAGTTAATTGCTTTCAAATATTATTGTGATTTCTCATTT  898
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  ATCTGGCTGAATAG-TAATTGCTTTCAAATA-TATTGTGATTTCTCATTT  892

seq1  TAAAACAGAGGTTGTGACATCATGTGTACAC-TCCAAAATAATTAAAGCA  947
      | ||||||| ||||||||||||||||||| | ||||| ||     |||||
seq2  T-AAACAGA-GTTGTGACATCATGTGTACCCTTCCAATAT-----AAGCA  935

seq1  -TCTTTAGTCACTTCAGAGTAATAAACTTTTAAATGATGTTCCTGATCCC  996
       ||||||||||||||||||| ||||   ||||| ||||| ||||||| ||
seq2  TTCTTTAGTCACTTCAGAGT-ATAA--CTTTAATTGATG-TCCTGAT-CC  980

seq1  TGGGAAAGAAATGTGTAGGGTGGGACAGTGAGCCAAGTGCTGGC  1040
      |||  |||||||| ||| |||||||||||   |||| |||||||
seq2  TGG--AAGAAATG-GTA-GGTGGGACAGT--ACCAA-TGCTGGC  1017

seq1: chr4_22424763_22425324
seq2: B6Ng01-177N08.g_81_645 (reverse)

seq1  TCGCTCAAGTCCCAGTGCGCCTCCCAACGCCCTCACC-TTCCTCAAGAAC  49
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCGCTCAAGTCCCAGTGCGCCTCCCAACGCCCTCACCTTTCCTCAAGAAC  50

seq1  CGCAGAGGCTGCGTCAGGACAGCTGCTCTTAA-GGCTGGGCGGGACCAGA  98
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CGCAGAGGCTGCGTCAGGACAGCTGCTCTTAAGGGCTGGGCGGGACCAGA  100

seq1  GGGGC-AAGATTAAAACCTCAAGGCGACCAATTCTAAGTCACTCAGAATA  147
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAAGATTAAAACCTCAAGGCGACCAATTCTAAGTCACTCAGAATA  150

seq1  GAGTTTTCACGTGTCAGTGTTTCCATTCAGCTACCTTCAGGCGTCTAGGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTCACGTGTCAGTGTTTCCATTCAGCTACCTTCAGGCGTCTAGGG  200

seq1  CTAAAGGGCATGCAAGTGAGAGCGTTTCTACGCGTCCCAGTGAATGGGGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGGCATGCAAGTGAGAGCGTTTCTACGCGTCCCAGTGAATGGGGG  250

seq1  AAGGGGCGAGAGGAGAAAGTGAACAGTGGGGGAGGAGATTGGCCACCCGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCGAGAGGAGAAAGTGAACAGTGGGGGAGGAGATTGGCCACCCGC  300

seq1  CCCAGACCCCACCGGGTGGAACTGTCCCGAGAGTCCAATAGGACTTGGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACCCCACCGGGTGGAACTGTCCCGAGAGTCCAATAGGACTTGGAA  350

seq1  GAGGATAGGGGCCAGTGGCGGTCACTGCCTCCCCACAGACTGCTCAGAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATAGGGGCCAGTGGCGGTCACTGCCTCCCCACAGACTGCTCAGAGC  400

seq1  ACGCTAGGACTTCGTAGTGGCTGGCGGAACGCCCTGTCCCGGGTGGAGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTAGGACTTCGTAGTGGCTGGCGGAACGCCCTGTCCCGGGTGGAGTA  450

seq1  CCTTTCCAGGAAGGCAATGGGCCTGAAAGTTAGCTTCCCAGGTGGCGGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCAGGAAGGCAATGGGCCTGAAAGTTAGCTTCCCAGGTGGCGGCA  500

seq1  GCGCCAGGAGATGGGATTGAAGGGGGTGTGGGGGGGGGGGGTAGGGGGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCAGGAGATGGGATTGAAGGGGGTGTGGGGGGGGGGGGTAGGGGGTA  550

seq1  AAGACTGTAAATTCG  562
      |||||||||||||||
seq2  AAGACTGTAAATTCG  565