BAC Information

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BAC

Clone NameB6Ng01-177N10
Chromosome4 (Build37)
Map Location 93,484,485 - 93,605,801
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177N10.bB6Ng01-177N10.g
ACCGA004999GA005000
length909913
definitionB6Ng01-177N10.b B6Ng01-177N10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,484,485 - 93,485,389)(93,604,890 - 93,605,801)
sequence
gaattccattcaactttaaactggtcagttaggactccaagtgacaccag
aacagtaaacacaaaaaaagttacaagctgggactgcaggaaagactatc
caagtaacatgatttgttgtgttttcagaattcctgagttctgttcacag
cagccacttggcagttcataactttagttccaggaatctgaagccctctt
ccaacctctgctgtcttgtcacatgagtatgatgtacacacatacacaca
gacaagacatacacacagagtaaggtgttgttgttgttgttataaatatg
cagaattgattactttgaatcgtcaaaaggaaacaaacacaggactgcac
caagagggcattggaagtaccagtctacaagcacatggattcatcaggtg
tggttccctttgtgctaattttatctctgaataggaaggggtggagttga
atgaaaacaccaacccaattgccacagacttctatcaacaggtctttttt
actgaattcatttctcatggtcacatctatagcctccccattcaaacaca
gggataaaaactcaatgctttgtagaaagaaaagctgaagcagttgtagg
atttcaatagaatgtttgatgctcctgtaacatgtgacaaaacacctgca
gaagagccctttcagggaagaacatgttagacacaggcagcagggataaa
cgaagaaaggatgcttgacatgttcaagaaaattggtgtatagcagaaca
atatgagcaagaaaaagaactttaggggatggagggagagatgtcataga
gagacacttcctatagtgtctcacaaaggtcttaaaaagcactgctttaa
aatcataattgataatcatatgaagaatggtgggaagtattatcatttgg
gtgttgggt

gaattccatgaaatatagagaaagaaatccactagaaaaagtacccacta
gaaaaagattctatgtcaattaaactaaagagtgttttcttcaaatacat
agtgaaataaaaattaactattatttttttaaactcagcgtaagataatt
ggtgagcagtatgtgtggtagtgtcctggaaagagtagaagtcgtggcag
cagcatctgttcctcttccatgggtgtgtttcacaggaaatgcagatttt
tcaagggatataatcaagtgtgccaaggcaacagtttctgggccctgacc
actaaaagaagtccttccctttcttccccatatacctcctgattgtgaca
gacaggatcactcagacatgttacatttcttgagtccagtcttgtctctg
tttctaaatctctggatttctctgttgcactttgatattcttcattctcc
aactttaatctttatgaatcctaataagtggatttccagagtattttttt
atgctaaaaaatcagtgcagtttcaatacacttgctctccattcgttttg
acatgtgtgcctggccatgtttcaacttcttttccttaccatggttccca
tttttggtccttgaccaatttacttgatttgctagtggaaattcatcttt
cttgtctatttcttgggataacaagtactgatgcccttgcccagcatttg
tgcatgatttggccttgcctagattttaagtctcatattagcctgtcatt
ggctttcttgcctaattctgaacatgatgggaagcttaaatcccatgttt
ggaaagaacagcttgtgtggctttaaaacagtattttttattttcaagat
ggtggaggggtaatatttcttcagttattttaagtttaaatgacttcttc
cctcttcttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_93484485_93485389
seq2: B6Ng01-177N10.b_46_954

seq1  GAATTCCATTCAACTTTAAACTGGTCAGTTAGGACTCCAAGTGACACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCAACTTTAAACTGGTCAGTTAGGACTCCAAGTGACACCAG  50

seq1  AACAGTAAACACAAAAAAAGTTACAAGCTGGGACTGCAGGAAAGACTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAAACACAAAAAAAGTTACAAGCTGGGACTGCAGGAAAGACTATC  100

seq1  CAAGTAACATGATTTGTTGTGTTTTCAGAATTCCTGAGTTCTGTTCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAACATGATTTGTTGTGTTTTCAGAATTCCTGAGTTCTGTTCACAG  150

seq1  CAGCCACTTGGCAGTTCATAACTTTAGTTCCAGGAATCTGAAGCCCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACTTGGCAGTTCATAACTTTAGTTCCAGGAATCTGAAGCCCTCTT  200

seq1  CCAACCTCTGCTGTCTTGTCACATGAGTATGATGTACACACATACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTCTGCTGTCTTGTCACATGAGTATGATGTACACACATACACACA  250

seq1  GACAAGACATACACACAGAGTAAGGTGTTGTTGTTGTTGTTATAAATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGACATACACACAGAGTAAGGTGTTGTTGTTGTTGTTATAAATATG  300

seq1  CAGAATTGATTACTTTGAATCGTCAAAAGGAAACAAACACAGGACTGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTGATTACTTTGAATCGTCAAAAGGAAACAAACACAGGACTGCAC  350

seq1  CAAGAGGGCATTGGAAGTACCAGTCTACAAGCACATGGATTCATCAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGGCATTGGAAGTACCAGTCTACAAGCACATGGATTCATCAGGTG  400

seq1  TGGTTCCCTTTGTGCTAATTTTATCTCTGAATAGGAAGGGGTGGAGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCCTTTGTGCTAATTTTATCTCTGAATAGGAAGGGGTGGAGTTGA  450

seq1  ATGAAAACACCAACCCAATTGCCACAGACTTCTATCAACAGGTCTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACACCAACCCAATTGCCACAGACTTCTATCAACAGGTCTTTTTT  500

seq1  ACTGAATTCATTTCTCATGGTCACATCTATAGCCTCCCCATTCAAACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATTCATTTCTCATGGTCACATCTATAGCCTCCCCATTCAAACACA  550

seq1  GGGATAAAAACTCAATGCTTTGTAGAAAGAAAAGCTGAAGCAGTTGTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAAAACTCAATGCTTTGTAGAAAGAAAAGCTGAAGCAGTTGTAGG  600

seq1  ATTTCAATAGAATGTTTGATGCTCCTGTAACATGTGACAAAACACCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATAGAATGTTTGATGCTCCTGTAACATGTGACAAAACACCTGCA  650

seq1  GAAGAGCCCTTTCAGGGAAGAACATGTTAGACACAGGCAGCAGGGATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCCCTTTCAGGGAAGAACATGTTAGACACAGGCAGCAGGGATAAA  700

seq1  CGAAG-AAGGATGCTTGACATGTTCAAGAAAATTGGTGTATAGCAGAACA  749
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGAAAGGATGCTTGACATGTTCAAGAAAATTGGTGTATAGCAGAACA  750

seq1  ATATGAGCAAGAAAAAGAACTTTAGGGGATGGAGGGAGAGATGTCATAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGCAAGAAAAAGAACTTTAGGGGATGGAGGGAGAGATGTCATAGA  800

seq1  GAGACACATCCTATAGTGTCTCACAAAGGTC-TAAAAAGCACTGC-TTAA  847
      ||||||| ||||||||||||||||||||||| ||||||||||||| ||||
seq2  GAGACACTTCCTATAGTGTCTCACAAAGGTCTTAAAAAGCACTGCTTTAA  850

seq1  AATCAT-ATTGATAATCATATGAAGAAT-GTGGGAAGTATTATCTATTGG  895
      |||||| ||||||||||||||||||||| ||||||||||||||| ||| |
seq2  AATCATAATTGATAATCATATGAAGAATGGTGGGAAGTATTATC-ATTTG  899

seq1  GGTGTTGGGT  905
      ||||||||||
seq2  GGTGTTGGGT  909


seq1: chr4_93604890_93605801
seq2: B6Ng01-177N10.g_69_981 (reverse)

seq1  TCAGAAAGAAGAGGGAAGAAGTCATTT-AACTTAAAATAACTGAAGAAAT  49
      |||| |||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCAG-AAGAAGAGGGAAGAAGTCATTTAAACTTAAAATAACTGAAGAAAT  49

seq1  A-TACCCCTCCA-CATCTTTGAAAATAAAACATACTGTTTTAAAGCCACA  97
      | |||||||||| |||| |||||||||||| |||||||||||||||||||
seq2  ATTACCCCTCCACCATC-TTGAAAATAAAAAATACTGTTTTAAAGCCACA  98

seq1  CAAGCTGTTCTTTCCAAACATGGGATTTAAGCTTCCCATCATGTTCAGAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGTTCTTTCCAAACATGGGATTTAAGCTTCCCATCATGTTCAGAA  148

seq1  TTAGGCAAGAAAGCCAATGACAGGCTAATATGAGACTTAAAATCTAGGCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCAAGAAAGCCAATGACAGGCTAATATGAGACTTAAAATCTAGGCA  198

seq1  AGGCCAAATCATGCACAAATGCTGGGCAAGGGCATCAGTACTTGTTATCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAATCATGCACAAATGCTGGGCAAGGGCATCAGTACTTGTTATCC  248

seq1  CAAGAAATAGACAAGAAAGATGAATTTCCACTAGCAAATCAAGTAAATTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAATAGACAAGAAAGATGAATTTCCACTAGCAAATCAAGTAAATTG  298

seq1  GTCAAGGACCAAAAATGGGAACCATGGTAAGGAAAAGAAGTTGAAACATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGACCAAAAATGGGAACCATGGTAAGGAAAAGAAGTTGAAACATG  348

seq1  GCCAGGCACACATGTCAAAACGAATGGAGAGCAAGTGTATTGAAACTGCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCACACATGTCAAAACGAATGGAGAGCAAGTGTATTGAAACTGCA  398

seq1  CTGATTTTTTAGCATAAAAAAATACTCTGGAAATCCACTTATTAGGATTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTTTAGCATAAAAAAATACTCTGGAAATCCACTTATTAGGATTC  448

seq1  ATAAAGATTAAAGTTGGAGAATGAAGAATATCAAAGTGCAACAGAGAAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATTAAAGTTGGAGAATGAAGAATATCAAAGTGCAACAGAGAAAT  498

seq1  CCAGAGATTTAGAAACAGAGACAAGACTGGACTCAAGAAATGTAACATGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATTTAGAAACAGAGACAAGACTGGACTCAAGAAATGTAACATGT  548

seq1  CTGAGTGATCCTGTCTGTCACAATCAGGAGGTATATGGGGAAGAAAGGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGATCCTGTCTGTCACAATCAGGAGGTATATGGGGAAGAAAGGGA  598

seq1  AGGACTTCTTTTAGTGGTCAGGGCCCAGAAACTGTTGCCTTGGCACACTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTCTTTTAGTGGTCAGGGCCCAGAAACTGTTGCCTTGGCACACTT  648

seq1  GATTATATCCCTTGAAAAATCTGCATTTCCTGTGAAACACACCCATGGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATATCCCTTGAAAAATCTGCATTTCCTGTGAAACACACCCATGGAA  698

seq1  GAGGAACAGATGCTGCTGCCACGACTTCTACTCTTTCCAGGACACTACCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACAGATGCTGCTGCCACGACTTCTACTCTTTCCAGGACACTACCA  748

seq1  CACATACTGCTCACCAATTATCTTACGCTGAGTTTAAAAAAATAATAGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACTGCTCACCAATTATCTTACGCTGAGTTTAAAAAAATAATAGTT  798

seq1  AATTTTTATTTCACTATGTATTTGAAGAAAACACTCTTTAGTTTAATTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTTCACTATGTATTTGAAGAAAACACTCTTTAGTTTAATTGA  848

seq1  CATAGAATCTTTTTCTAGTGGGTACTTTTTCTAGTGGATTTCTTTCTCTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAATCTTTTTCTAGTGGGTACTTTTTCTAGTGGATTTCTTTCTCTA  898

seq1  TATTTCATGGAATTC  912
      |||||||||||||||
seq2  TATTTCATGGAATTC  913


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