BAC Information

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BAC

Clone NameB6Ng01-178C20
Chromosome4 (Build37)
Map Location 146,994,236 - 146,994,861
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik
Downstream geneLOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178C20.bB6Ng01-178C20.g
ACCGA005241GA005242
length1,189629
definitionB6Ng01-178C20.b B6Ng01-178C20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatacaggagagaaaccttacaaatgtagtcaatgtgacaaatcc
tttactgaaaatggccatctgagaattcatcagagaaatcatacaggtga
gaaaccttacaaatgtagtcaatgtgacaaatcctttactgaaaatggcc
atctgagaattcatcagagaattcatacaggagagaaaccttacaaatgc
agtgaatgtgacaaatgctttactaaaaaattcagtttgaggattcatca
gagaattcatacaggagagaaaccttacaaatgcactgaatgtgacaaat
gctttactttcaaaggcagtctgaggattcatcagagaattcatacagga
gagaaaccctacaaatgtagtgaatgtgacaaatcctttactgaaaatgg
ctgtttgagaattcatcagagaattcatacaggagagaaaccttacaaat
gcactgaatgtgacaaatgctttactttcaaaggcagtctgaggattcat
cagagaattcatacaggagagaaaccttacaaatgcactgaatgtgacaa
atcctttactgaaaagggcaaactgagaattcatcagagaattcatacag
gagagaaaccttacaaatgtagtgaatgtgacaaatgctttactgaataa
ggacatcagagaattcatacaggagagataccttacaaatagtttgtatg
tgacaaatacaatacaatgtcagtctgagaaatcatcagtttttaataca
gtagagaatatttataaatgaagtgaacgagacaatcctttaccaagata
tatcatcttaaaaatcattagagaatacttacagaagagaaacttttcaa
ttatattgaaaggtatgaaatcctttactcttggcctatttcctagaatg
ttaacagtgaatacttacaggatacaaacttaactcatgcattgtatgaa
gaaatatttttgacttcatttcaggtcaaagagaatatctaataactttt
aggggaaagtatttctgttggggaaagtgtggcctgtgttttattcatgt
ctattctgtcaattgagctccacaactagaggaattagtatgatattgaa
aatcatgtggaaaacttcaatgccatgttcaaatctaattaatgttccac
ctatttttgcttgagaactcttgaaaaggtaaaaatgta
gaattcactctgtagacctggctggccttgaactcagaaatccgcctgcc
tctgcctcccaagtgctgggattaaaggcatgcaccaccaccgcctgcct
tactatcacttgctatatcaaatatttttaaagtagacaaaggtcaaata
gctatatgtagtagtcagacaaggccataaccttctcatctgtggggaat
tgcaggctggtctccagtcgagctgaggtctaaacccaggtggtcataat
tcacctacatgacacggtaggcattccctcatgctcctggaactcaggcc
cctgcataaggcacaacctcccacagcccccacaagagaagcatggtcag
tagtcaagtaagcaatggcccaagcttctgaccttcaggctaaactcctc
cccagttacctagcaacagtgaagaccataaaaaggtgtgctcagtcccc
accttgctctctcactcctttgtcctctaacctctcacttctctcttctt
ttccctttctctttgtcttctctctcctttatctttgttctctcctctcc
tctactatccttctcctccctcccctcccctcccctcccctcctctctct
ctctctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146994236_146994861
seq2: B6Ng01-178C20.g_66_694

seq1  GAATTCACTCTATAGACCTGGCTGGCCTCGAACTCAGGAATCCGCTTGCC  50
      ||||||||||| |||||||||||||||| |||||||| ||||||| ||||
seq2  GAATTCACTCTGTAGACCTGGCTGGCCTTGAACTCAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCAACACCACCGCCTGGCT  100
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACCGCCTGCCT  100

seq1  TACTATCACTTGCTATATCAAATATTTTTAAAGTAGACAAAGGTCAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCACTTGCTATATCAAATATTTTTAAAGTAGACAAAGGTCAAATA  150

seq1  GCTATATGTATTGGTCAGACAAGGCCATAACCTTCTCATCTGTGGGGAAT  200
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  GCTATATGTAGTAGTCAGACAAGGCCATAACCTTCTCATCTGTGGGGAAT  200

seq1  TGCAGGCTGGTCTCCAGTCGAGCTGAGGTCTGAACCCCGATGGTCATAAT  250
      ||||||||||||||||||||||||||||||| ||||| | ||||||||||
seq2  TGCAGGCTGGTCTCCAGTCGAGCTGAGGTCTAAACCCAGGTGGTCATAAT  250

seq1  TCACCTACATGACACAGTAGGCATTCCCTCATGCTCCTGGAACTCAGGCC  300
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCACCTACATGACACGGTAGGCATTCCCTCATGCTCCTGGAACTCAGGCC  300

seq1  CCTGCATAAGGCACAACCTCCCACAGCCCCCACAAGAGAAGCATGGTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATAAGGCACAACCTCCCACAGCCCCCACAAGAGAAGCATGGTCAG  350

seq1  TAGTCAAGTAAGCAATGGCCCAAGCTTCTGACCTTCAGGCTAAACTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAGTAAGCAATGGCCCAAGCTTCTGACCTTCAGGCTAAACTCCTC  400

seq1  CCCAGTTACCTAGCAACAGTGAAGACCATAAAAAGGTGTGCTCAGCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCCAGTTACCTAGCAACAGTGAAGACCATAAAAAGGTGTGCTCAGTCCCC  450

seq1  ACCTTGCTCTCTCTCACTCCTTTGTCCTCTAACCTCTCACTTCTCTCTTC  500
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTG--CTCTCTCACTCCTTTGTCCTCTAACCTCTCACTTCTCTCTTC  498

seq1  TTTTCCCTTTCTCTGTCTTCTCTCTCCTCTCTCCTTTATCTTTGTTCTCT  550
      |||||||||||||     | | ||| ||||||||||||||||||||||||
seq2  TTTTCCCTTTCTC-----TTTGTCTTCTCTCTCCTTTATCTTTGTTCTCT  543

seq1  CCTCTCCTCTACTATCCTTCTCCT----------CCCTCCCCTCCTCTTC  590
      ||||||||||||||||||||||||          ||||||||||| || |
seq2  CCTCTCCTCTACTATCCTTCTCCTCCCTCCCCTCCCCTCCCCTCCCCTCC  593

seq1  TCTCTCTCTCTCTCTCTCCCTCTCTCCCTCTCTCTC  626
      |||||||||||||||||| ||||||| |||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  629