BAC Information

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BAC

Clone NameB6Ng01-178O14
Chromosome4 (Build37)
Map Location 114,562,447 - 114,563,590
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC242627, LOC100040625, A630098G03Rik, LOC666048
Downstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178O14.bB6Ng01-178O14.g
ACCGA005771GA005772
length1,1421,200
definitionB6Ng01-178O14.b B6Ng01-178O14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttttgtaaagaaaggaatgtcctgggcctatctgttttgaaaag
aacagatatttataaagtataccagatttcttgagtacctactatgtgct
aaatgctcactcactatttaggctcacaacaagcctatagaggcaacctt
cagattctagaagaagtagatgtagagagtgcatacacctttgcacccac
agctggcccagcacttatgcaagctcttactcctcttgctgggtctgctc
tgcttcacctggcagctccatcgccttctccacacactgtgttcagtgtt
tttttttttttttttgctcagatttgaggaaggagggcactagaatgttt
aagagatgttttctgtaattctatcccctagacttaagtcaactgatggt
caccaggatacctcttttgtaaggagacactgaatttctatgttccttct
cttcaggacaacaattgtgaatatagcaaaaatgacatttgtgatcctct
gcagcttcccatcttccaaaagaacttctttcttggtgctcctgggaggg
gtcctgttgcttttcaacggatggtctttgggctttgagtttacccatgg
aaagttttctcaagagccatagcatctgacaggtgcttagctgggagcaa
cagacgttcctccattccagagaagccccagagctgcctcagctccattg
ggtgagtctctgagccttccctgcttattagtattaggggaagtcattct
aagcacaagtctacaaaggatggtggctccttgtgccgagacacctgccc
ttctgatatggcaccaggtgaagctctgtacccatcaatatatggctttg
aaagtaatttgtctgagtggggaaggactgaccactcagccacttttctt
gaggtcatcctgtcggaacttcatggaagagtcttgaggatctagaacca
aacatgaatgagcaccccctctacgaatagcaagcctctgctctgccctg
gcaaatcatgaatgagacacgctctacgatagccaagcctctcccctggg
caaattatcctttgaaaccagcagagaactaaccgggctttggaaaatct
cgcactcgaagagatcaatgactagttcaagaatctggaaac
gaattctcagcaccatgtctgcccacacgctgccatgcttgccaccatga
aagtcaatgaactaaacttctgaactgtaagcaagcctcaattaaatgct
ttcctttataagagttataagtggagcatgatcatctcgttagatgcaga
aaaagcatttgacaagatccaacacccattcatgataaaagttttggaaa
gatcaggaattcaaggtccatacctaaacatgataaaagcaatctacagc
aaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatccc
actaaaatcagggactagacaaggctgcccactttctccctaccttttca
acatagtacttgaagtattagccagagcaattcgacaacaaaaggagatc
aaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcaga
tgatatgatagtatatataagtgaccctaaaaattctaccagagaactcc
taaacctgataaacagcttcggtgaagtagctggatataaaataaactca
aacaagtcaatggcctttctctatacaaagaataaacaggctgagaaaga
aattagggaaacaacacccttctcaatagtcacaaataatataaaatatc
ttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttc
aaatctctgaagaaagaaattaaagaagatctcagaagattgaaagatct
cccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgc
caaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaa
tttcttcaacgaattggaaggagcaatttgcaaatttgtctggaataaca
aaaacctaggatagcaaaaagtcttctcaaggataaaaagaacttctggc
cgaatccccatgccagacctaaagctttactacagagcaattgtgataaa
aactgcatggtactggtatagaagaaagacaagtagaccagtgggataga
tggagaatccagaattgaacccacacacctatgtccacttgatcttcgaa
catggagcctaaacaatccagttgaagaaaagaacagccattcacaaatg
tgcctggccacaactgggtgctatccagtgcagaaagaaagtgtccatac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_114562447_114563590
seq2: B6Ng01-178O14.b_46_1187 (reverse)

seq1  GTTT-CAGATTCTTGAACTAGTCATTTTAATCTCTTCGAGTGCGAG-CTC  48
      |||| |||||||||||||||||||  || |||||||||||||||||  | 
seq2  GTTTCCAGATTCTTGAACTAGTCA--TTGATCTCTTCGAGTGCGAGATTT  48

seq1  TCCAAAG-CCGGTTAGTTCTCTGCTTGTTTCCAAAAGGATAATTTGCCCA  97
      ||||||| ||||||||||||||||| |||||  |||||||||||||||||
seq2  TCCAAAGCCCGGTTAGTTCTCTGCTGGTTTC--AAAGGATAATTTGCCCA  96

seq1  GGGGAGAGGCTTTGCTATCGTAGAGCGGTGTCTCATTCATGATTTGCCCA  147
      |||||||||||| ||||||||||||| ||||||||||||||||||| |||
seq2  GGGGAGAGGCTTGGCTATCGTAGAGC-GTGTCTCATTCATGATTTG-CCA  144

seq1  GGGCAGAGCAGAGGCTTTGCTA-TCGTAGAGGGGTGCCTCATTCATGGTT  196
      ||||||||||||||| |||||| |||||||||||   ||||||||| |||
seq2  GGGCAGAGCAGAGGC-TTGCTATTCGTAGAGGGGGTGCTCATTCAT-GTT  192

seq1  TGGTTCTAGATCCTCAAGACTCTTCCATGAAGTTCCGACAGGATGACCTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTAGATCCTCAAGACTCTTCCATGAAGTTCCGACAGGATGACCTC  242

seq1  AAG-AAAGTGGCTGAGTGGTCAGTCCTTCCCCACTCAGAC-AATTACTTT  294
      ||| |||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGAAAAGTGGCTGAGTGGTCAGTCCTTCCCCACTCAGACAAATTACTTT  292

seq1  CAAAGCCATATATTGATGGGTACAGAGCTTCACCTGGTGCCATATCAGAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCATATATTGATGGGTACAGAGCTTCACCTGGTGCCATATCAGAA  342

seq1  GGGCAGGTGTCTCGGCACAAGGAGCCACCATCCTTTGTAGACTTGTGCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGTGTCTCGGCACAAGGAGCCACCATCCTTTGTAGACTTGTGCTT  392

seq1  AGAATGACTTCCCCTAATACTAATAAGCAGGGAAGGCTCAGAGACTCACC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGACTTCCCCTAATACTAATAAGCAGGGAAGGCTCAGAGACTCACC  442

seq1  CAATGGAGCTGAGGCAGCTCTGGGGCTTCTCTGGAATGGAGGAACGTCTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGCTGAGGCAGCTCTGGGGCTTCTCTGGAATGGAGGAACGTCTG  492

seq1  TTGCTCCCAGCTAAGCACCTGTCAGATGCTATGGCTCTTGAGAAAACTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCCAGCTAAGCACCTGTCAGATGCTATGGCTCTTGAGAAAACTTT  542

seq1  CCATGGGTAAACTCAAAGCCCAAAGACCATCCGTTGAAAAGCAACAGGAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGTAAACTCAAAGCCCAAAGACCATCCGTTGAAAAGCAACAGGAC  592

seq1  CCCTCCCAGGAGCACCAAGAAAGAAGTTCTTTTGGAAGATGGGAAGCTGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCAGGAGCACCAAGAAAGAAGTTCTTTTGGAAGATGGGAAGCTGC  642

seq1  AGAGGATCACAAATGTCATTTTTGCTATATTCACAATTGTTGTCCTGAAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATCACAAATGTCATTTTTGCTATATTCACAATTGTTGTCCTGAAG  692

seq1  AGAAGGAACATAGAAATTCAGTGTCTCCTTACAAAAGAGGTATCCTGGTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAACATAGAAATTCAGTGTCTCCTTACAAAAGAGGTATCCTGGTG  742

seq1  ACCATCAGTTGACTTAAGTCTAGGGGATAGAATTACAGAAAACATCTCTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAGTTGACTTAAGTCTAGGGGATAGAATTACAGAAAACATCTCTT  792

seq1  AAACATTCTAGTGCCCTCCTTCCTCAAATCTGAGCAAAAAAAAAAAAAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTCTAGTGCCCTCCTTCCTCAAATCTGAGCAAAAAAAAAAAAAAA  842

seq1  AACACTGAACACAGTGTGTGGAGAAGGCGATGGAGCTGCCAGGTGAAGCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGAACACAGTGTGTGGAGAAGGCGATGGAGCTGCCAGGTGAAGCA  892

seq1  GAGCAGACCCAGCAAGAGGAGTAAGAGCTTGCATAAGTGCTGGGCCAGCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGACCCAGCAAGAGGAGTAAGAGCTTGCATAAGTGCTGGGCCAGCT  942

seq1  GTGGGTGCAAAGGTGTATGCACTCTCTACATCTACTTCTTCTAGAATCTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGCAAAGGTGTATGCACTCTCTACATCTACTTCTTCTAGAATCTG  992

seq1  AAGGTTGCCTCTATAGGCTTGTTGTGAGCCTAAATAGTGAGTGAGCATTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGCCTCTATAGGCTTGTTGTGAGCCTAAATAGTGAGTGAGCATTT  1042

seq1  AGCACATAGTAGGTACTCAAGAAATCTGGTATACTTTATAAATATCTGTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATAGTAGGTACTCAAGAAATCTGGTATACTTTATAAATATCTGTT  1092

seq1  CTTTTCAAAACAGATAGGCCCAGGACATTCCTTTCTTTACAAAAGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAAACAGATAGGCCCAGGACATTCCTTTCTTTACAAAAGAATTC  1142