BAC Information

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BAC

Clone NameB6Ng01-178O16
Chromosome4 (Build37)
Map Location 116,887,173 - 117,005,164
singlet/doubletdoublet
Overlap geneGm1661, Tmem53, 4931406I20Rik
Upstream genePik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c
Downstream geneLOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178O16.bB6Ng01-178O16.g
ACCGA005775GA005776
length5101,052
definitionB6Ng01-178O16.b B6Ng01-178O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,887,173 - 116,887,687)(117,004,114 - 117,005,164)
sequence
cagtagagggaggattagcggcccatgcctttaatctcagcattcaggaa
gggcagaggcagaggggcagaggggcagaggggcagaggggcagaggggc
agaggggcagaggggaagaggggcagaggcataggcagaggcagagatgg
aggcaggtagatctctgtgagttccaggccagcttggtctatgtagagag
ttccataacaaccatggctacatagactttatgttatagagaaaccttct
ctgtctctgtctctgtctctgtctctgtctctgtctttgtctctctgtcc
tctctctctctctctctctctctctctctctctctctctctctcacacac
actctcacacacacacacacacacacaatcagcaatctacaattcttcct
tgagaagcccatacccactctactgtttgtgttttcttttttgcgactgg
gtctcactatgtaggcctggctattctggaactctctatgtagaccagga
tggttcttga
gaattcagaagcagaacacgcgcactagacgatgggttcaacccctgaga
actgaaaagaaatcccaaaaatatttgtttaacatatttatcagtgattc
tatgtttagagaggccggagaaccatacacacacacatacaccacataca
tacacacacacaacacatacacacagagagagacacaacatatatacata
catactattttggtagatagaaataaggtatgggcgtatgcctttaatat
cagtactcaggagacagagacaggtgaacctctgagtttgagaccagccc
ggtcttcagagttcagccagggttattgcagagaaaccctgtcacgaaaa
aaaacaaaaaaacaaaaaacaagagagagagagagagagagagagagaga
gagagagagagaagaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaagaaagaaaagaaggaagaaaagaaggaagaaaggaa
gaaaagacaggaaagaaagagagagagagagaaaggaggtattttaaaga
aaagataattatttcatttgaggggagagtagcaaaggcaaatgactgtg
tccattgggcattggacaaatcaggataggagcggaggagagatgcttac
ctggagacaagtgtagggattgtgcagagagaaagaaaagttgaagccaa
aagggttcagaagttctctgaaagcagagaccactgccttaagtcagagg
aaccaagacatgggagaggtcttggtgtcaggaaagctgatactgacctt
aaagctctctaattccaggactgtctgtgggtgtaaagtgacccggtagg
agccacagacacaggcagaatgaccacagtctcctgggctgctgagggag
acccatggggagggagaacagccacagggaaagcttctgtcctggatagc
aaagggaggtgagaggacaggtgcccaagagaggacctttgtccccaaga
gtagatggccagagtcaaggagaaagaaaagccaccaaattggggcgggg
gc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_116887173_116887687
seq2: B6Ng01-178O16.b_47_562

seq1  GAATTCCAGTAGAGGGAGGATTAGCGGCCCATGCCTTTAATCTCAGCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTAGAGGGAGGATTAGCGGCCCATGCCTTTAATCTCAGCATT  50

seq1  CAGGAAGGGCAGAGGCAGAGGGGCAGAGGGGCAGAGGGGCAGAGGGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGGCAGAGGCAGAGGGGCAGAGGGGCAGAGGGGCAGAGGGGCAG  100

seq1  AGGGGCAGAGGGGCAGAGGGGAAGAGGGGCAGAGGCATAGGCAGAGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAGAGGGGCAGAGGGGAAGAGGGGCAGAGGCATAGGCAGAGGCAG  150

seq1  AGATGGAGGCAGGTAGATCTCTGTGAGTTCCAGGCCAGCTTGGTCTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGGCAGGTAGATCTCTGTGAGTTCCAGGCCAGCTTGGTCTATGT  200

seq1  AGAGAGTTCCATAACAACCATGGCTACATAGACTTTATGTTATAGAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTCCATAACAACCATGGCTACATAGACTTTATGTTATAGAGAAA  250

seq1  CCTTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTTTGTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTTTGTCTCT  300

seq1  CTGTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  350

seq1  ACACACACACACACACACACACACACACACACAATCAGTAATCTACAATT  400
      |||||||| | ||||||||||||||||||||||||||| |||||||||||
seq2  ACACACACTCTCACACACACACACACACACACAATCAGCAATCTACAATT  400

seq1  CTTCCTTGAGAAGCCCATACCCACACTACTGTTTGTCTTTCCTTTTTTGC  450
      |||||||||||||||||||||||| ||||||||||| ||| |||||||||
seq2  CTTCCTTGAGAAGCCCATACCCACTCTACTGTTTGTGTTTTCTTTTTTGC  450

seq1  GACTGGGTCTCACTATGTAGTCCTGGCTATTCTGGAACTCTCTATGTAGA  500
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GACTGGGTCTCACTATGTAGGCCTGGCTATTCTGGAACTCTCTATGTAGA  500

seq1  CCAGGATGG-ACTTGA  515
      |||||||||  |||||
seq2  CCAGGATGGTTCTTGA  516

seq1: chr4_117004114_117005164
seq2: B6Ng01-178O16.g_66_1117 (reverse)

seq1  GCCCCCGCCCCCAATTTCGCTGCTCTCTTTCCTCCTTGACTCTTGCCATC  50
      ||||||| ||||||||| |  ||| |  || |||||||||||| ||||||
seq2  GCCCCCG-CCCCAATTTGGTGGCTTTTCTTTCTCCTTGACTCTGGCCATC  49

seq1  TACTCTTGGGGACAAAGGTCCTCTCTTGGGCACCTGTCCTCTCACCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTGGGGACAAAGGTCCTCTCTTGGGCACCTGTCCTCTCACCTCCC  99

seq1  TTTTGCTTTCCAGGACAG-AGCTTTCCCTGTGGCTGTTCT-CCTTCCCAT  148
       |||||| |||||||||| ||||||||||||||||||||| ||| |||||
seq2  -TTTGCTATCCAGGACAGAAGCTTTCCCTGTGGCTGTTCTCCCTCCCCAT  148

seq1  GGGTCTCCCTCAGCAGCCCAGGAGACTGTGGTCATTCTGCCTGTGTCTGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCCCTCAGCAGCCCAGGAGACTGTGGTCATTCTGCCTGTGTCTGT  198

seq1  GGCTCCTACCGGGTCACTTTACA-CCACAGACAGTCCTGGAATTAGAGAG  247
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGCTCCTACCGGGTCACTTTACACCCACAGACAGTCCTGGAATTAGAGAG  248

seq1  CTTTAAGGTCAGTATCAGCTTTCCTGACACCAAGACCTCTCCCATGTCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGGTCAGTATCAGCTTTCCTGACACCAAGACCTCTCCCATGTCTT  298

seq1  GGTTCCTCTGACTTAAGGCAGTGGTCTCTGCTTTCAGAGAACTTCTGAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTCTGACTTAAGGCAGTGGTCTCTGCTTTCAGAGAACTTCTGAAC  348

seq1  CCTTTTGGCTTCAACTTTTCTTTCTCTCTGCACAATCCCTACACTTGTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGGCTTCAACTTTTCTTTCTCTCTGCACAATCCCTACACTTGTCT  398

seq1  CCAGGTAAGCATCTCTCCTCCGCTCCTATCCTGATTTGTCCAATGCCCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAAGCATCTCTCCTCCGCTCCTATCCTGATTTGTCCAATGCCCAA  448

seq1  TGGACACAGTCATTTGCCTTTGCTACTCTCCCCTCAAATGAAATAATTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACAGTCATTTGCCTTTGCTACTCTCCCCTCAAATGAAATAATTAT  498

seq1  CTTTTCTTTAAAATACCTCCTTTCTCTCTCTCTCTCTTTCTTTCCTGTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTAAAATACCTCCTTTCTCTCTCTCTCTCTTTCTTTCCTGTCT  548

seq1  TTTCTTCCTTTCTTCCTTCTTTTCTTCCTTCTTTTCTTTCTTTCTTTCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCTTTCTTCCTTCTTTTCTTCCTTCTTTTCTTTCTTTCTTTCTT  598

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCTTCTCTCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCTTCTCTCTC  648

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTTTTTTGTTTTTTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTTTTTTGTTTTTTTG  698

seq1  TTTTTTTTCGTGACAGGGTTTCTCTGCAATAACCCTGGCTGAACTCTGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCGTGACAGGGTTTCTCTGCAATAACCCTGGCTGAACTCTGAA  748

seq1  GACCGGGCTGGTCTCAAACTCAGAGGTTCACCTGTCTCTGTCTCCTGAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGGGCTGGTCTCAAACTCAGAGGTTCACCTGTCTCTGTCTCCTGAGT  798

seq1  ACTGATATTAAAGGCATACGCCCATACCTTATTTCTATCTACCAAAATAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATATTAAAGGCATACGCCCATACCTTATTTCTATCTACCAAAATAG  848

seq1  TATGTATGTATATATGTTGTGTCTCTCTCTGTGTGTATGTGTTGTGTGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTATATATGTTGTGTCTCTCTCTGTGTGTATGTGTTGTGTGTG  898

seq1  TGTATGTATGTGGTGTATGTGTGTGTGTATGGTTCTCCGGCCTCTCTAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATGTGGTGTATGTGTGTGTGTATGGTTCTCCGGCCTCTCTAAA  948

seq1  CATAGAATCACTGATAAATATGTTAAACAAATATTTTTGGGATTTCTTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAATCACTGATAAATATGTTAAACAAATATTTTTGGGATTTCTTTT  998

seq1  CAGTTCTCAGGGGTTGAACCCATCGTCTAGTGCGCGTGTTCTGCTTCTGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCAGGGGTTGAACCCATCGTCTAGTGCGCGTGTTCTGCTTCTGA  1048

seq1  ATTC  1051
      ||||
seq2  ATTC  1052