BAC Information

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BAC

Clone NameB6Ng01-178O20
Chromosome4 (Build37)
Map Location 111,674,886 - 111,675,777
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik
Downstream geneLOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik, LOC433745, LOC545668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178O20.bB6Ng01-178O20.g
ACCGA005782GA005783
length1,195897
definitionB6Ng01-178O20.b B6Ng01-178O20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatg
gggctcagaactgaacaaagaattctcacctgaggaataccgaatggcag
agaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaa
atcaaaacaaccctgagattccacctcacaccagtcagaatggctaagat
caaaaattcaggtgacagcagatgctggcgtggatgtggagaaagaggaa
cactcctccattgttggtgggattgcaggcttgtacaaccactctggaaa
tcagtctggcggttcctcagaaaattggacatagtactaccggaggatcc
agcaatacctctcctgggcatatatccagaagatgccccaaatggtaaga
aggacacatgctccactatgtttataggagccttatttataatagccaga
agctggaaagaacccagatgcccctcaacagaggaatggatacagaaaat
gtggtacatctacacaatggagtactactcagctattaaaaagaatgaat
ttatgaaattcctagccaaatggatggacctggagggcatcatcctgagt
gaggtagcacattcacaaaggaactcacacaatatgtactcactgataag
tggatattagcccaaaacctaggatacccaagatataagatacaatttcc
taaacacatgaaactcaagaaaaatgaagactgaagtgtggacactatgc
ccctccttagaagtgggaacaaaacacccttggaaggagttacagagaca
aagtttggagctgagatgaaaggatggaccatctagagactgccatatcc
agggatccaccccataatcagcatccaaacgctgacaccattgcataccc
tagcaagattttatcgaaaggacccagatgtagctgtctcttgtgagact
atgccggggtctagcaaacacagaagtggatgctcacagtcagctaatgg
atggatcacaggctcctaatgagagctagagaagtaccagagctaaggga
tctgcaccctaatagcggaacaacattatgacctacaggtacccggagcc
tctgactctagctgcaattgtattctaggatgcctagtcgtcatcatgga
cgagagtcatgtacccgctcaccttatatgtcctcgattaccaga
gaattctgtttaagaaatttttccctgtgccaatgacctcaaggctcttt
cccactttctcttcaattagattcagtttgaaattctattaccattgctt
ttactctcatcaatattcaccctttgaaaatttcaatcagaatcacctta
agacttcttgtagcttgcaagtctttacctagctggtttaataatctttt
attaattccttccaaaatattccaaaggctctaccacattttcaggcata
tagtaatgggggggggaatatctcatcttggtaacaactctatgtataaa
taaactatttactcttatagcaaatatctaagttaataaactaaaaaaaa
gttttattacatttattttggctggtaatttttgagatctccagtcacca
taatgaacatatatcttttaggcctaccatgcaaaggcaactcaatatga
tcgaataaatagcaaagtctattgccatgtatgggaagccagagagaaaa
aaaaaggtgggggggggcaagatcctatacttctgagggaatgtacacag
taccacagagaactttcatcatatggaactcttcaagatttcattgccct
gttcccagtcacaccaggctatggatcttgtaaccctttactacatggat
ttgggaagacattttaaaataataacgtaacagttagtatacttttatgt
gtcttttgaattatacatttttactaatcacacatttatttttctgacaa
attcactgtataatttgaagcatgggtatatattttgttttagtgtacct
ttcatatttgtcttattcttagacattatgtaaattggagattgagttag
agcagtggttctcaacctttcctaattgtctccccacctcttaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_111674886_111675777
seq2: B6Ng01-178O20.g_64_960 (reverse)

seq1  GTATTAAGAGGTGG---GAGCATTAGG-AAGGTTGAGAACCACTGCTCTA  46
      ||||||||||||||   ||  |||||| ||||||||||||||||||||||
seq2  GTATTAAGAGGTGGGGAGACAATTAGGAAAGGTTGAGAACCACTGCTCTA  50

seq1  ACTCAATCTCCAATTTACATAATGTCTAAGAATAAGACAAATATGAAAGG  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATCTCCAATTTACATAATGTCTAAGAATAAGACAAATATGAAAGG  100

seq1  TACACT-AAACAAAATATATACCCATGCTTCAAATTATACAGTGAATTTG  145
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTAAAACAAAATATATACCCATGCTTCAAATTATACAGTGAATTTG  150

seq1  TCAGAAAAATAAATGTGTGATTAGTAAAAATGTATAATTCAAAAGACACA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAATAAATGTGTGATTAGTAAAAATGTATAATTCAAAAGACACA  200

seq1  TAAAAGTATACTAACTGTTACGTTATTATTTTAAAATGTCTTCCCAAATC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTATACTAACTGTTACGTTATTATTTTAAAATGTCTTCCCAAATC  250

seq1  CATGTAGTAAAGGGTTACAAGATCCATAGCCTGGTGTGACTGGGAACAGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGTAAAGGGTTACAAGATCCATAGCCTGGTGTGACTGGGAACAGG  300

seq1  GCAATGAAATCTTGAAGAGTTCCATATGATGAAAGTTCTCTGTGGTACTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAAATCTTGAAGAGTTCCATATGATGAAAGTTCTCTGTGGTACTG  350

seq1  TGTACATTCCCTCAGAAGTATAGGATCTTGCCCCCCCCCACCTTTTTTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATTCCCTCAGAAGTATAGGATCTTGCCCCCCCCCACCTTTTTTTT  400

seq1  TCTCTCTGGCTTCCCATACATGGCAATAGACTTTGCTATTTATTCGATCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGGCTTCCCATACATGGCAATAGACTTTGCTATTTATTCGATCA  450

seq1  TATTGAGTTGCCTTTGCATGGTAGGCCTAAAAGATATATGTTCATTATGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGTTGCCTTTGCATGGTAGGCCTAAAAGATATATGTTCATTATGG  500

seq1  TGACTGGAGATCTCAAAAATTACCAGCCAAAATAAATGTAATAAAACTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGAGATCTCAAAAATTACCAGCCAAAATAAATGTAATAAAACTTT  550

seq1  TTTTTAGTTTATTAACTTAGATATTTGCTATAAGAGTAAATAGTTTATTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTTTATTAACTTAGATATTTGCTATAAGAGTAAATAGTTTATTT  600

seq1  ATACATAGAGTTGTTACCAAGATGAGATATTCCCCCCCCCATTACTATAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAGAGTTGTTACCAAGATGAGATATTCCCCCCCCCATTACTATAT  650

seq1  GCCTGAAAATGTGGTAGAGCCTTTGGAATATTTTGGAAGGAATTAATAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAAAATGTGGTAGAGCCTTTGGAATATTTTGGAAGGAATTAATAAA  700

seq1  AGATTATTAAACCAGCTAGGTAAAGACTTGCAAGCTACAAGAAGTCTTAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTAAACCAGCTAGGTAAAGACTTGCAAGCTACAAGAAGTCTTAA  750

seq1  GGTGATTCTGATTGAAATTTTCAAAGGGTGAATATTGATGAGAGTAAAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTCTGATTGAAATTTTCAAAGGGTGAATATTGATGAGAGTAAAAG  800

seq1  CAATGGTAATAGAATTTCAAACTGAATCTAATTGAAGAGAAAGTGGGAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTAATAGAATTTCAAACTGAATCTAATTGAAGAGAAAGTGGGAAA  850

seq1  GAGCCTTGAGGTCATTGGCACAGGGAAAAATTTCTTAAACAGAATTC  892
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTGAGGTCATTGGCACAGGGAAAAATTTCTTAAACAGAATTC  897