BAC Information

Click to search

BAC

Clone NameB6Ng01-179B21
Chromosome4 (Build37)
Map Location 63,742,811 - 63,893,888
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
Downstream genePappa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179B21.bB6Ng01-179B21.g
ACCGA005927GA005928
length5191,152
definitionB6Ng01-179B21.b B6Ng01-179B21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,742,811 - 63,743,335)(63,892,751 - 63,893,888)
sequence
ctaagctggaggaacgtttaaattctttccatctgcctgcatagcattaa
gatttcaactccagtcttggggtgagaggaattcttaacttctcctttaa
taaaatcaatagaagctgaaaagaagaccaagttgacactcatcatttca
ctagcattctgcctctaagcatccacggtttccctcttcttttctaccat
ataagtaagatgcagttcttgattctaagggctctcaatcaacaggcacg
aagaacattcaggtgcctgaagaaatagaaagtgtgcaaggctcttcaga
gaaaggtgaaggggcacagacctttaagctgtttacagatactatatcat
ctgtgagttagaggtgaagtaagatattcagagagacaatgtggcatgcc
taaggttacttagggaaaagaaaagcaaaaacagatggattataatccta
aaatgtaacatctattgtgctccttcttaagaagaaatagtaactgtacc
aggaggtaagaatttcttc
gaattctatgctctctaataagaaacttgcctaaaccaagtctccattgt
taccaatacaaataactatcagacattctggaattataaacttcttaaat
cgtcgattatcacatataaatctgcaggcctgtttcattgtataacacat
atgttttttcctagctcagtcccttcctcctagtacttacttaaaatata
aatgataatagaattggcattgtagtttcctcatcctttccaaaagtcta
aagattacttttcttttctttattatgtgtcccttatctgaatagagttg
gacattcctacataaagttacactccaagaaatctttgtctcagaattcc
ctttcacaaagttaaaaatggattcttcaacctctctctttccaaataaa
atttcatcctcatcattatctctcagttttggcagaccagcaggacatac
gtcatacccttgctgtctgacagggtctccttggagatggatctaagaat
gaggagatttgaatggctcccagttggattctatagtgttctttctgggg
tagcctttcgcctccacaaaattctaggcgagtctaatgtgggctgtgga
tgacaggaagtagaaggttccaagtctgtttctaatgaagagtagatgta
tcgttcagttagagctatgtctacagataagagaaattaccctctgccag
gcccaaaggctccagaatattatcctggcgattcaagagcaagacgtgga
agtaggaatttgtaaaggaagtcttattcaacagggttttacttccatag
attttgaatctcccatgatgacattcttagtgtttttgtcataactgaca
taagctcccattgaattctttgaaataagctctgacttcaactcaatgcc
taaaattagggtcagaagaatttgctatggaaccagatctcctatgaaaa
agcccttagacccttgaggaaaaacagttcacttcattgggaatgtcatc
accactactaacatcaacattatattttttcagatcatttcaatgaaagg
accatatctggtttatctttccacgccccagcacatggatacctggttca
gaaatatttattgctgtctactgtgctttgcaaatggttatgttaaccct
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_63742811_63743335
seq2: B6Ng01-179B21.b_46_570

seq1  GAATTCCTAAGCTGGAGGAACGTTTAAATTCTTTCCATCTGCCTGCATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGCTGGAGGAACGTTTAAATTCTTTCCATCTGCCTGCATAG  50

seq1  CATTAAGATTTCAACTCCAGTCTTGGGGTGAGAGGAATTCTTAACTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGATTTCAACTCCAGTCTTGGGGTGAGAGGAATTCTTAACTTCTC  100

seq1  CTTTAATAAAATCAATAGAAGCTGAAAAGAAGACCAAGTTGACACTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATAAAATCAATAGAAGCTGAAAAGAAGACCAAGTTGACACTCATC  150

seq1  ATTTCACTAGCATTCTGCCTCTAAGCATCCACGGTTTCCCTCTTCTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACTAGCATTCTGCCTCTAAGCATCCACGGTTTCCCTCTTCTTTTC  200

seq1  TACCATATAAGTAAGATGCAGTTCTTGATTCTAAGGGCTCTCAATCAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATATAAGTAAGATGCAGTTCTTGATTCTAAGGGCTCTCAATCAACA  250

seq1  GGCACGAAGAACATTCAGGTGCCTGAAGAAATAGAAAGTGTGCAAGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGAAGAACATTCAGGTGCCTGAAGAAATAGAAAGTGTGCAAGGCTC  300

seq1  TTCAGAGAAAGGTGAAGGGGCACAGACCTTTAAGCTGTTTACAGATACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGAAAGGTGAAGGGGCACAGACCTTTAAGCTGTTTACAGATACTA  350

seq1  TATCATCTGTGAGTTAGAGGTGAAGTAAGATATTCAGAGAGACAATGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTGTGAGTTAGAGGTGAAGTAAGATATTCAGAGAGACAATGTGG  400

seq1  CATGCCTAAGGTTACTTAGGGAAAAGAAAAGCAAAAACAGATGGATTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTAAGGTTACTTAGGGAAAAGAAAAGCAAAAACAGATGGATTATA  450

seq1  ATCCTAAAATGTAACATCTATTGTGCTCCTTCTTAAGAAGAAATAGTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAAATGTAACATCTATTGTGCTCCTTCTTAAGAAGAAATAGTAAC  500

seq1  TGTACCAGGAGGTAAGAATTTCTTC  525
      |||||||||||||||||||||||||
seq2  TGTACCAGGAGGTAAGAATTTCTTC  525

seq1: chr4_63892751_63893888
seq2: B6Ng01-179B21.g_67_1218 (reverse)

seq1  AGAGGG-TAACATAA-CATATTCAAACCACAGTAGACACCAATAAATA--  46
      |||||| |||||||| ||| | |||| ||||||||||| |||||||||  
seq2  AGAGGGTTAACATAACCATTTGCAAAGCACAGTAGACAGCAATAAATATT  50

seq1  TCTG-ACCAGGTAT-CATGTGCTGGGGCGTG--AAGATAAACCAGATATG  92
      |||| ||||||||| ||||||||||||||||  |||||||||||||||||
seq2  TCTGAACCAGGTATCCATGTGCTGGGGCGTGGAAAGATAAACCAGATATG  100

seq1  GTCCCTTTCATTGGAATGGATCTGAAAATATAT----GTGGTG-TAGTAG  137
      || |||||||||| ||| |||||||||| ||||     || || ||||||
seq2  GT-CCTTTCATTGAAAT-GATCTGAAAAAATATAATGTTGATGTTAGTAG  148

seq1  TTGGTGATGACATTCCCAATG-AGTGAACTG-TTTTCCTCAA-GGTCTAA  184
       |||||||||||||||||||| ||||||||| |||||||||| |||||||
seq2  -TGGTGATGACATTCCCAATGAAGTGAACTGTTTTTCCTCAAGGGTCTAA  197

seq1  GGGCTTTTTCATAGGAGATCTGGTTCCATAGCAAATTCTTCTGACCCTAA  234
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTTTCATAGGAGATCTGGTTCCATAGCAAATTCTTCTGACCCTAA  247

seq1  TTTTA-GCATTGAGTTGAAGTCAGAGCTTATTTCAAAGAATTCAATGGGA  283
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGCATTGAGTTGAAGTCAGAGCTTATTTCAAAGAATTCAATGGGA  297

seq1  GCTTATGTCAGTTATGACAAAAACACTAAGAATGTCATCATGGGAGATTC  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGTCAGTTATGACAAAAACACTAAGAATGTCATCATGGGAGATTC  347

seq1  AAAATCTATGGAAGTAAAACCCTGTTGAATAAGACTTCCTTTACAAATTC  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTATGGAAGTAAAACCCTGTTGAATAAGACTTCCTTTACAAATTC  397

seq1  CTACTTCCACGTCTTGCTCTTGAATCGCCAGGATAATATTCTGGAGCCTT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCCACGTCTTGCTCTTGAATCGCCAGGATAATATTCTGGAGCCTT  447

seq1  TGGGCCTGGCAGAGGGTAATTTCTCTTATCTGTAGACATAGCTCTAACTG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTGGCAGAGGGTAATTTCTCTTATCTGTAGACATAGCTCTAACTG  497

seq1  AACGATACATCTACTCTTCATTAGAAACAGACTTGGAACCTTCTACTTCC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATACATCTACTCTTCATTAGAAACAGACTTGGAACCTTCTACTTCC  547

seq1  TGTCATCCACAGCCCACATTAGACTCGCCTAGAATTTTGTGGAGGCGAAA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCCACAGCCCACATTAGACTCGCCTAGAATTTTGTGGAGGCGAAA  597

seq1  GGCTACCCCAGAAAGAACACTATAGAATCCAACTGGGAGCCATTCAAATC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACCCCAGAAAGAACACTATAGAATCCAACTGGGAGCCATTCAAATC  647

seq1  TCCTCATTCTTAGATCCATCTCCAAGGAGACCCTGTCAGACAGCAAGGGT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATTCTTAGATCCATCTCCAAGGAGACCCTGTCAGACAGCAAGGGT  697

seq1  ATGACGTATGTCCTGCTGGTCTGCCAAAACTGAGAGATAATGATGAGGAT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGTATGTCCTGCTGGTCTGCCAAAACTGAGAGATAATGATGAGGAT  747

seq1  GAAATTTTATTTGGAAAGAGAGAGGTTGAAGAATCCATTTTTAACTTTGT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTATTTGGAAAGAGAGAGGTTGAAGAATCCATTTTTAACTTTGT  797

seq1  GAAAGGGAATTCTGAGACAAAGATTTCTTGGAGTGTAACTTTATGTAGGA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGAATTCTGAGACAAAGATTTCTTGGAGTGTAACTTTATGTAGGA  847

seq1  ATGTCCAACTCTATTCAGATAAGGGACACATAATAAAGAAAAGAAAAGTA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAACTCTATTCAGATAAGGGACACATAATAAAGAAAAGAAAAGTA  897

seq1  ATCTTTAGACTTTTGGAAAGGATGAGGAAACTACAATGCCAATTCTATTA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAGACTTTTGGAAAGGATGAGGAAACTACAATGCCAATTCTATTA  947

seq1  TCATTTATATTTTAAGTAAGTACTAGGAGGAAGGGACTGAGCTAGGAAAA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATATTTTAAGTAAGTACTAGGAGGAAGGGACTGAGCTAGGAAAA  997

seq1  AACATATGTGTTATACAATGAAACAGGCCTGCAGATTTATATGTGATAAT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATGTGTTATACAATGAAACAGGCCTGCAGATTTATATGTGATAAT  1047

seq1  CGACGATTTAAGAAGTTTATAATTCCAGAATGTCTGATAGTTATTTGTAT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACGATTTAAGAAGTTTATAATTCCAGAATGTCTGATAGTTATTTGTAT  1097

seq1  TGGTAACAATGGAGACTTGGTTTAGGCAAGTCTCTTATTAGAGAGCATAG  1133
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGTAACAATGGAGACTTGGTTTAGGCAAGTTTCTTATTAGAGAGCATAG  1147

seq1  AATTC  1138
      |||||
seq2  AATTC  1152