BAC Information

Click to search

BAC

Clone NameB6Ng01-179J14
Chromosome4 (Build37)
Map Location 142,686,648 - 142,834,836
singlet/doubletdoublet
Overlap genePrdm2, LOC666018, EG626575, LOC433776
Upstream gene9030409G11Rik, EG665983, LOC546484, 6330411D24Rik
Downstream genePdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179J14.bB6Ng01-179J14.g
ACCGA006277GA006278
length598975
definitionB6Ng01-179J14.b B6Ng01-179J14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,686,648 - 142,687,252)(142,833,865 - 142,834,836)
sequence
ttctgcaaggttaaaagaaaatgcatgctgactgtttcctaagaatcaaa
gtgctgaggtcaagggatgcagagtctcaggataaccacaaggcaaccag
gaataaacaactcaagtgacatgtaaagacaaaactgggctttgggtctg
catgagatgagctcgcagaaaacagaaaattctactttaggattttctct
agtgagagctgagctgtctaaagatctctggagagcaaaaacagctcttc
agggatttttttttcttaacaggatttctgacttggtcagaacatccgaa
aagtttttatagtagcttttctgactttgttcagaaaacccatgaactat
ccagataacttttagaatttttattagcagaggaagctgtctcaaccaga
gagtttttagaatagcaagaaaaagctatctagaggagagagagaaagag
agagagagagagagagagagagagagagagagagagagagaaagagagag
agagaggagagagggagagagagagagcgagagagcgagcaagcacaggc
tggtccttggcatctattctgtgtgtgtttgtgtgtgtgtgtgtgtgt
gaattccacacccctaagccccttaccccataaaaatccctagctttcga
gcctcgtggccggcatccgttatctcctgtgtgggatacatgtcggtccg
gagctccgtaattaaacgtcctcatataattacagcaagttgggtcctca
tgtttctttgggtgctctcacactcccgagactagagtaggggtccccga
aagggggtcttacaagatctgaagacagctacatgtacttatgtataata
aataaaattaaattaaattaagttaaaaaagaggattatccaatgtttaa
aaaaaaagaaaagaacagccctgtattttgtttgtttgtttgttttgttt
tttgagttgagttgagttgaggatatactactaaattcacaggaaaacat
acattctagaattcaacacgcactgatgttataatgtaaactacttaaat
agagttctggctaactagctcttttgctttccttagggagtgttttcaca
gcacaaatatggagactagtgtttttaatctttgtcttttagatctctag
ccaaatatctaatcttcttttttaatttttaaagatttatttatttatta
tatgtaagtacagtagctgtcttcagacacaacacaagagggcatcagat
ctcattacggatggtcatgagccaccatgtggttgttgggaattgaactc
aggaccttcagaagagcagtcagtgctcttaactgcggggccatctctcc
agcctggcaaatatctaatcttttgaaggagttaaaaaaatatatatata
aagggccgggtgtggtggcgcaagccttttaatcccaacacttgggaggc
agaggcaggtggatttctgagttctgaggccagccttgtcctacagagtg
agttccaggacagccagagctacacagaagtaaccctgtctcataaccta
tctatcgacaactaaacaaataaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_142686648_142687252
seq2: B6Ng01-179J14.b_42_645

seq1  GAATTCTTCTGCAAGGTTAAAAGAAAATGCATGCTGACTGTTTCCTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGCAAGGTTAAAAGAAAATGCATGCTGACTGTTTCCTAAGA  50

seq1  ATCAAAGTGCTGAGGTCAAGGGATGCAGAGTCTCAGGATAACCACAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGTGCTGAGGTCAAGGGATGCAGAGTCTCAGGATAACCACAAGGC  100

seq1  AACCAGGAATAAACAACTCAAGTGACATGTAAAGACAAAACTGGGCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGAATAAACAACTCAAGTGACATGTAAAGACAAAACTGGGCTTTG  150

seq1  GGTCTGCATGAGATGAGCTCGCAGAAAACAGAAAATTCTACTTTAGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCATGAGATGAGCTCGCAGAAAACAGAAAATTCTACTTTAGGATT  200

seq1  TTCTCTAGTGAGAGCTGAGCTGTCTAAAGATCTCTGGAGAGCAAAAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGTGAGAGCTGAGCTGTCTAAAGATCTCTGGAGAGCAAAAACAG  250

seq1  CTCTTCAGGGATTTTTTTTTCTTAACAGGATTTCTGACTTGGTCAGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGGGATTTTTTTTTCTTAACAGGATTTCTGACTTGGTCAGAACA  300

seq1  TCCGAAAAGTTTTTATAGTAGCTTTTCTGACTTTGTTCAGAAAACCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAAAAGTTTTTATAGTAGCTTTTCTGACTTTGTTCAGAAAACCCATG  350

seq1  AACTATCCAGATAACTTTTAGAATTTTTATTAGCAGAGGAAGCTGTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCCAGATAACTTTTAGAATTTTTATTAGCAGAGGAAGCTGTCTCA  400

seq1  ACCAGAGAGTTTTTAGAATAGCAAGAAAAAGCTATCTAGAGGAGAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGAGTTTTTAGAATAGCAAGAAAAAGCTATCTAGAGGAGAGAGAG  450

seq1  AAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAG  500

seq1  AGAGAGAGAGAGGAGAGAGGGAGAGAGAGAGAGCGAGAGAGCGAGCAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGGAGAGAGGGAGAGAGAGAGAGCGAGAGAGCGAGCAAGC  550

seq1  ACAGGCTGGTCCTTGGCATCTATTCGTGTGTGTGTGTGTGTGTGTGTGTG  600
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  ACAGGCTGGTCCTTGGCATCTATTC-TGTGTGTGTTTGTGTGTGTGTGTG  599

seq1  TGTGT  605
      |||||
seq2  TGTGT  604

seq1: chr4_142833865_142834836
seq2: B6Ng01-179J14.g_65_1039 (reverse)

seq1  ATTTATTTGTTTGTTTGTTTGTTTGTTTGTTTTTGAGACAGGGTTTC-TC  49
      ||||||||||||  ||| | | | | | | || |||||||||||| | ||
seq2  ATTTATTTGTTTAGTTG-TCGATAGATAGGTTATGAGACAGGGTTACTTC  49

seq1  TGTGTAGCTCTGGCTGTCCTGGAACTCACTCTGTA-GACCAGGCTGGCCT  98
      ||||||||||||||||||||||||||||||||||| ||| ||||||||||
seq2  TGTGTAGCTCTGGCTGTCCTGGAACTCACTCTGTAGGACAAGGCTGGCCT  99

seq1  C-GAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGTTGGGATT-AAA  146
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGTTGGGATTAAAA  149

seq1  GGCTTGCGCCACCACACCCGGCCCTTTATATATATATTTTTTTAACTCCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCGCCACCACACCCGGCCCTTTATATATATATTTTTTTAACTCCT  199

seq1  TCAAAAGATTAGATATTTGCCAGGCTGGAGAGATGGCCCCGCAGTTAAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGATTAGATATTTGCCAGGCTGGAGAGATGGCCCCGCAGTTAAGA  249

seq1  GCACTGACTGCTCTTCTGAAGGTCCTGAGTTCAATTCCCAACAACCACAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGACTGCTCTTCTGAAGGTCCTGAGTTCAATTCCCAACAACCACAT  299

seq1  GGTGGCTCATGACCATCCGTAATGAGATCTGATGCCCTCTTGTGTTGTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCATGACCATCCGTAATGAGATCTGATGCCCTCTTGTGTTGTGT  349

seq1  CTGAAGACAGCTACTGTACTTACATATAATAAATAAATAAATCTTTAAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACAGCTACTGTACTTACATATAATAAATAAATAAATCTTTAAAA  399

seq1  ATTAAAAAAGAAGATTAGATATTTGGCTAGAGATCTAAAAGACAAAGATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAGAAGATTAGATATTTGGCTAGAGATCTAAAAGACAAAGATT  449

seq1  AAAAACACTAGTCTCCATATTTGTGCTGTGAAAACACTCCCTAAGGAAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACTAGTCTCCATATTTGTGCTGTGAAAACACTCCCTAAGGAAAG  499

seq1  CAAAAGAGCTAGTTAGCCAGAACTCTATTTAAGTAGTTTACATTATAACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGCTAGTTAGCCAGAACTCTATTTAAGTAGTTTACATTATAACA  549

seq1  TCAGTGCGTGTTGAATTCTAGAATGTATGTTTTCCTGTGAATTTAGTAGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCGTGTTGAATTCTAGAATGTATGTTTTCCTGTGAATTTAGTAGT  599

seq1  ATATCCTCAACTCAACTCAACTCAAAAAACAAAACAAACAAACAAACAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTCAACTCAACTCAACTCAAAAAACAAAACAAACAAACAAACAAA  649

seq1  ATACAGGGCTGTTCTTTTCTTTTTTTTTAAACATTGGATAATCCTCTTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGGCTGTTCTTTTCTTTTTTTTTAAACATTGGATAATCCTCTTTT  699

seq1  TTAACTTAATTTAATTTAATTTTATTTATTATACATAAGTACATGTAGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTAATTTAATTTAATTTTATTTATTATACATAAGTACATGTAGCT  749

seq1  GTCTTCAGATCTTGTAAGACCCCCTTTCGGGGACCCCTACTCTAGTCTCG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAGATCTTGTAAGACCCCCTTTCGGGGACCCCTACTCTAGTCTCG  799

seq1  GGAGTGTGAGAGCACCCAAAGAAACATGAGGACCCAACTTGCTGTAATTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTGAGAGCACCCAAAGAAACATGAGGACCCAACTTGCTGTAATTA  849

seq1  TATGAGGACGTTTAATTACGGAGCTCCGGACCGACATGTATCCCACACAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGACGTTTAATTACGGAGCTCCGGACCGACATGTATCCCACACAG  899

seq1  GAGATAACGGATGCCGGCCACGAGGCTCGAAAGCTAGGGATTTTTATGGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAACGGATGCCGGCCACGAGGCTCGAAAGCTAGGGATTTTTATGGG  949

seq1  GTAAGGGGCTTAGGGGTGTGGAATTC  972
      ||||||||||||||||||||||||||
seq2  GTAAGGGGCTTAGGGGTGTGGAATTC  975