BAC Information

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BAC

Clone NameB6Ng01-179O18
Chromosome4 (Build37)
Map Location 71,054,101 - 71,197,516
singlet/doubletdoublet
Overlap genenone
Upstream geneCdk5rap2, Megf9, LOC100039565, LOC100039979
Downstream geneLOC667638, EG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179O18.bB6Ng01-179O18.g
ACCGA006508GA006509
length1,075661
definitionB6Ng01-179O18.b B6Ng01-179O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,196,436 - 71,197,516)(71,054,101 - 71,054,761)
sequence
gaattccacaaaaactctgtctgattggttaactgaagtcctggatttac
tagtgacctacatggaatggcagatactagaataactcaaatacataaga
agaaaataacttggggttgcacttattatttattatactcaacgaataat
tctcttgctgtttgtgtgagaatctacagtttttctttgtaaaccactgg
taaatacataatcagagtagttccgatatctttaattgtgtgtgttgatt
atttttcctctggaatctgtgatgtagtaagagaaattttcatgtagatg
attttaaaagatcaactgccagatgacaagggattaaggagaactagaat
tttgctgtcagaggcaagatgatcatgggtagaacaatgaacagataatg
gctgagtttcagttgaaagcactctattagcatggatttttcatggtagt
tgagtgatcacagtttccctaggaatagaagagaaaaaaatcccattcca
ttgttcatcatagcattgttcattttttggaacagaaaacctggagtgca
ttgatcagaaagctgcccttaacatgtgataggaacctttattctttctt
cttatagacttaaaaaccttaatagatgcagaacctaaaaaggagagcag
tcttccctggaggattctggaatagagccaacagcaagatggaaataaac
tgcagacttaaaattattgatcagaatgaccatttaaaggagaaacaagt
acaagaaatccattagtttaatgttttttcttcaagagcaagtgttctga
tagaatgaaagaccatcaacagaagacagaatcagcatgaacttgacaat
agtttgtacagtaagattacctgtagataccgaatttgttttgaactagt
gaacaaataaaggctacatttgaatttttaaatgaagtataatcatatga
tttctcctttacatcctcaacctctcctctgtcatgctttcactcccctt
caagctgatggcctcttttttctttgatagaggagatcttctaccagcac
tgtattgggtaccagaattcctttc

gaattctttgtttagctctgtaccccatttttaatagggttatatggttc
tctggagtctcaattcttgaattctttgtatatattagatattagctctc
tattggatttaggattggtaatctttcaacaaacctaaaagaagatagcc
acataaacagaatcccaactccaacaacaaaaataacaggaagcaacaat
tacttttccttaatatcttttaatatcaagggactcaatttcccaacaaa
atgacatagactacagactggttacataaacaggacccaacatttttatg
cataaaggaaacctacgtcagtgacaaagatagacacttcctctgtctgg
aaaacagttttccaagcaaatggtgccaagaaacatgctgggacttctat
tttcaactgtccaaattttctaaaatacctttgatccttttcctttcttg
attgattagcaacactacagtggctccttcttcattgagacttggtctcc
agcagatagtaccatcccagtttcctatgttgtttactgtctttattttc
cttggagatgaatttcttttgtctagtgttggatcagcctatcatgccat
taaccatcccttgtctctctctctcttctctctctctctctctctctctc
tctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_71196436_71197516
seq2: B6Ng01-179O18.b_43_1117 (reverse)

seq1  GAAAGGAAAAGAAATCTGGTACCCAATTACAGTGCTGGTAGAAGATTCTC  50
           |||| ||| |||||||||||| |||||||||||||||||| ||||
seq2  -----GAAAGGAATTCTGGTACCCAA-TACAGTGCTGGTAGAAGA-TCTC  43

seq1  CTCTATCAAAG-AAAAAGAGGCCATCAGCTTGAAGGGGAGTGAAAGCATG  99
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCAAAGAAAAAAGAGGCCATCAGCTTGAAGGGGAGTGAAAGCATG  93

seq1  ACAGAGGAGAGGTTGAGGATGTTAAAGGAGAAATCATATGATTATACTTC  149
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACAGAGGAGAGGTTGAGGATG-TAAAGGAGAAATCATATGATTATACTTC  142

seq1  ATTTAAAAATTCAAATGTAGCCTTTATTTG-TCACTAGTTCAAAACAAAT  198
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTTAAAAATTCAAATGTAGCCTTTATTTGTTCACTAGTTCAAAACAAAT  192

seq1  TCGGTATCTACAGGTAATCTTACTGTACAAACTATTGTCAAGTTCATGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTATCTACAGGTAATCTTACTGTACAAACTATTGTCAAGTTCATGCT  242

seq1  GATTCTGTCTTCTGTTGATGGTCTTTCATTCTATCAGAACACTTGCTCTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTCTTCTGTTGATGGTCTTTCATTCTATCAGAACACTTGCTCTT  292

seq1  GAAGAAAAAACATTAAACTAATGGATTTCTTGTACTTGTTTCTCCTTTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAAACATTAAACTAATGGATTTCTTGTACTTGTTTCTCCTTTAA  342

seq1  ATGGTCATTCTGATCAATAATTTTAAGTCTGCAGTTTATTTCCATCTTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCATTCTGATCAATAATTTTAAGTCTGCAGTTTATTTCCATCTTGC  392

seq1  TGTTGGCTCTATTCCAGAATCCTCCAGGGAAGACTGCTCTCCTTTTTAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCTCTATTCCAGAATCCTCCAGGGAAGACTGCTCTCCTTTTTAGG  442

seq1  TTCTGCATCTATTAAGGTTTTTAAGTCTATAAGAAGAAAGAATAAAGGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATCTATTAAGGTTTTTAAGTCTATAAGAAGAAAGAATAAAGGTT  492

seq1  CCTATCACATGTTAAGGGCAGCTTTCTGATCAATGCACTCCAGGTTTTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCACATGTTAAGGGCAGCTTTCTGATCAATGCACTCCAGGTTTTCT  542

seq1  GTTCCAAAAAATGAACAATGCTATGATGAACAATGGAATGGGATTTTTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAAAAAATGAACAATGCTATGATGAACAATGGAATGGGATTTTTTT  592

seq1  CTCTTCTATTCCTAGGGAAACTGTGATCACTCAACTACCATGAAAAATCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTATTCCTAGGGAAACTGTGATCACTCAACTACCATGAAAAATCC  642

seq1  ATGCTAATAGAGTGCTTTCAACTGAAACTCAGCCATTATCTGTTCATTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATAGAGTGCTTTCAACTGAAACTCAGCCATTATCTGTTCATTGT  692

seq1  TCTACCCATGATCATCTTGCCTCTGACAGCAAAATTCTAGTTCTCCTTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCATGATCATCTTGCCTCTGACAGCAAAATTCTAGTTCTCCTTAA  742

seq1  TCCCTTGTCATCTGGCAGTTGATCTTTTAAAATCATCTACATGAAAATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGTCATCTGGCAGTTGATCTTTTAAAATCATCTACATGAAAATTT  792

seq1  CTCTTACTACATCACAGATTCCAGAGGAAAAATAATCAACACACACAATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACTACATCACAGATTCCAGAGGAAAAATAATCAACACACACAATT  842

seq1  AAAGATATCGGAACTACTCTGATTATGTATTTACCAGTGGTTTACAAAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATCGGAACTACTCTGATTATGTATTTACCAGTGGTTTACAAAGA  892

seq1  AAAACTGTAGATTCTCACACAAACAGCAAGAGAATTATTCGTTGAGTATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTAGATTCTCACACAAACAGCAAGAGAATTATTCGTTGAGTATA  942

seq1  ATAAATAATAAGTGCAACCCCAAGTTATTTTCTTCTTATGTATTTGAGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAATAAGTGCAACCCCAAGTTATTTTCTTCTTATGTATTTGAGTT  992

seq1  ATTCTAGTATCTGCCATTCCATGTAGGTCACTAGTAAATCCAGGACTTCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGTATCTGCCATTCCATGTAGGTCACTAGTAAATCCAGGACTTCA  1042

seq1  GTTAACCAATCAGACAGAGTTTTTGTGGAATTC  1081
      |||||||||||||||||||||||||||||||||
seq2  GTTAACCAATCAGACAGAGTTTTTGTGGAATTC  1075


seq1: chr4_71054101_71054761
seq2: B6Ng01-179O18.g_72_732

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATATGGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATATGGTTC  50

seq1  TCTGGAGTCTCAATTCTTGAATTCTTTGTATATATTAGATATTAGCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTCTCAATTCTTGAATTCTTTGTATATATTAGATATTAGCTCTC  100

seq1  TATTGGATTTAGGATTGGTAATCTTTCAACAAACCTAAAAGAAGATAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGATTTAGGATTGGTAATCTTTCAACAAACCTAAAAGAAGATAGCC  150

seq1  ACATAAACAGAATCCCAACTCCAACAACAAAAATAACAGGAAGCAACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAACAGAATCCCAACTCCAACAACAAAAATAACAGGAAGCAACAAT  200

seq1  TACTTTTCCTTAATATCTTTTAATATCAATGGACTCAATTTCCCAACAAA  250
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TACTTTTCCTTAATATCTTTTAATATCAAGGGACTCAATTTCCCAACAAA  250

seq1  ATGACATAGACTACAGACTGGTTACATAAACAGGACCCAACATTTTTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATAGACTACAGACTGGTTACATAAACAGGACCCAACATTTTTATG  300

seq1  CATAAAGGAAACCTACGTCAGTGACAAAGATAGACACTTCCTCTGTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGGAAACCTACGTCAGTGACAAAGATAGACACTTCCTCTGTCTGG  350

seq1  AAAACAGTTTTCCAAGCAAATGGTGCCAAGAAACATGCTGGGACTTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTTTTCCAAGCAAATGGTGCCAAGAAACATGCTGGGACTTCTAT  400

seq1  TTTCAACTGTCCAAATTTTCTAAAATACCTTTGATCCTTTTCCTTTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTGTCCAAATTTTCTAAAATACCTTTGATCCTTTTCCTTTCTTG  450

seq1  ATTGATTAGCAACACTACAGTGGCTCCTTCTTCATTGAGACTTGGTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTAGCAACACTACAGTGGCTCCTTCTTCATTGAGACTTGGTCTCC  500

seq1  AGCAGATAGTACCATCCCAGTTTCCTATGTTGTTTACTGTCTTTATTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATAGTACCATCCCAGTTTCCTATGTTGTTTACTGTCTTTATTTTC  550

seq1  CTTGGAGATGAATTTCTTTTGTCTAGTGTTGGATCAGCCTATCATGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGATGAATTTCTTTTGTCTAGTGTTGGATCAGCCTATCATGCCAT  600

seq1  TAACCATCCCTTGTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATCCCTTGTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTC  650

seq1  TCTCTCTCTCT  661
      |||||||||||
seq2  TCTCTCTCTCT  661


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