BAC Information

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BAC

Clone NameB6Ng01-180E19
Chromosome4 (Build37)
Map Location 71,893,943 - 72,073,066
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039979, LOC667638, EG667649, Tle1
Downstream geneAldoa-ps2, EG384113, LOC667713, LOC100039698, OTTMUSG00000001246
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180E19.bB6Ng01-180E19.g
ACCGA006776GA006777
length7631,112
definitionB6Ng01-180E19.b B6Ng01-180E19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,893,943 - 71,894,707)(72,071,952 - 72,073,066)
sequence
gaattctagtctttaaaggcaagtgcccatcatattctgatgggagtagg
ggtggggaggataagaataaatttttttcaaaaatatgtatacagcccag
tggtgatggtgacacataccttgaaactcagcacacaagaggtagagaca
ggtggatctctgtgagtttgaggctagactggtctaaagatcaagtaaat
tccaaggctacacagagaaactgtaacttgaaaacaataaaataaaatat
gtatacaagtatcagatttccttgtggcactttcatatatattcatatat
tttcttgacctccctccccattttattgtaccctgtctccactgtaacct
tcctcccacagaatttctcttccattgacataccatattctatttctctt
ccctgatggactctttcttctctcataggcccacttctcgtttcctggct
tctatgtgcacatagttttttcatttatatatataaattagaatctgagt
tccacatatgagagaaaatacgactaaaattcgccatagctagaactctt
tatcatagcctgcacttggtagtcagagaaaaacttgaaggactcagatt
tttccttctctctgtgcatcatgggaattgaaatatgtttaggtttaatt
acaaatgcctttacttgctgaaaacatctcagtggcctttttttttttta
aagtttttcttttcttgagagccattctaactgaggtagacaggatctca
agtcgtttaactt
gaattcaagagaaatgtatgttacagtcactcgctctaggtggaaatgaa
agtaatctagagccgcaggcagagatgagtaattctgcagctgttccccc
agtcttagtctcatttctgtataataaaaataggatttttatcataaaat
tgagggttgaataatatacagatatttcccagaaagttagcaatgggttc
cttgggtttagggatgatagttgcaacccactagtcattctccatacagg
ttgagtgaggatgtttttgtagacagagagatgggatccgaaaattataa
agacgatagggtcagcagtttgacctcatgtttgcccttctatgaaacca
cactgtctaatatatgtctgaaagatactgatttttgtatctcaatacct
ctacccctgacatcactgaagactggtggttgggagatataaaaaaattg
tgcttgctgtaaaatttttatgtctgagattgtatagttccctttttttt
tctgttctaaatctgtaccattctgtgtcacaagaaaatgttggcacatg
aaaatagagaagcatttacccatcccctatgaattttgtaacccaatttc
cttgtatgatttcaataaaagactgggctgagtcaattctaggtgaatat
cgtgactcccaagttcaagggctcacacgccaaaaagaacagcctgtcaa
tattgtatctcaattgtgtgttttcttatttgcctaccaggtatccttag
tccttgacaacccccaacccttgttgagactgcgaaccaggcagtaaatg
cagaaagtttttacccttctgacttggagtactgatccctggataggatc
ctagaggcttaagttgggagaagaagtaaataagctgggtgaagggagaa
gtcaataaaggcattccatgacactaccaagtacccaaacatcaaaagca
gctgtctctgcccactacctaatgaattcccaaacccttggccctgacct
ttggtcagtgtgttcaacacaaatgtgaccagatggtatgcacacaccat
ctacgcatatcctaatcttttagtcaatatgtgaggttgtctatcttaag
tgagatccattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_71893943_71894707
seq2: B6Ng01-180E19.b_30_792

seq1  GAATTCTAGTCTTTAAAGGCAAGTGCCCATCATATTCTGATGGGAGTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTCTTTAAAGGCAAGTGCCCATCATATTCTGATGGGAGTAGG  50

seq1  GGTGGGGAGGATAAGAATAAATTTTTTTCAAAAATATGTATACAGCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGAGGATAAGAATAAATTTTTTTCAAAAATATGTATACAGCCCAG  100

seq1  TGGTGATGGTGACACATACCTTGAAACTCAGCACACAAGAGGTAGAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATGGTGACACATACCTTGAAACTCAGCACACAAGAGGTAGAGACA  150

seq1  GGTGGATCTCTGTGAGTTTGAGGCTAGACTGGTCTAAAGATCAAGTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATCTCTGTGAGTTTGAGGCTAGACTGGTCTAAAGATCAAGTAAAT  200

seq1  TCCAAGGCTACACAGAGAAACTGTAACTTGAAAACAATAAAATAAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCTACACAGAGAAACTGTAACTTGAAAACAATAAAATAAAATAT  250

seq1  GTATACAAGTATCAGATTTCCTTGTGGCACTTTCATATATATTCATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACAAGTATCAGATTTCCTTGTGGCACTTTCATATATATTCATATAT  300

seq1  TTTCTTGACCTCCCTCCCCATTTTATTGTACCCTGTCTCCACTGTAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGACCTCCCTCCCCATTTTATTGTACCCTGTCTCCACTGTAACCT  350

seq1  TCCTCCCACAGAATTTCTCTTCCATTGACATACCATATTCTATTTCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCACAGAATTTCTCTTCCATTGACATACCATATTCTATTTCTCTT  400

seq1  CCCTGATGGACTCTTTCTTCTCTCATAGGCCCACTTCTCGTTTCCTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATGGACTCTTTCTTCTCTCATAGGCCCACTTCTCGTTTCCTGGCT  450

seq1  TCTATGTGCACATAGTTTTTTCATTTATATATATAAATTAGAATCTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTGCACATAGTTTTTTCATTTATATATATAAATTAGAATCTGAGT  500

seq1  TCCACATATGAGAGAAAATACGACTAAAATTCGCCATAGCTAGAACTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATATGAGAGAAAATACGACTAAAATTCGCCATAGCTAGAACTCTT  550

seq1  TATCATAGCCTGCACTTGGTAGTCAGAGAAAAACTTGAAGGACTCAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAGCCTGCACTTGGTAGTCAGAGAAAAACTTGAAGGACTCAGATT  600

seq1  TTTCCTTCTCTCTGTGCATCATGGGAATTGAAATATGTTTAGGTTTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTCTCTGTGCATCATGGGAATTGAAATATGTTTAGGTTTAATT  650

seq1  ACAAATGCCTTTACTTGCTG-AAACATCTCAGTGGCCTTTTTTTTTTTTT  699
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  ACAAATGCCTTTACTTGCTGAAAACATCTCAGTGGCCTTTTTTTTTTTTA  700

seq1  AAAGTTTTCTTTTCTTGAGAGCCATTCTAACTGAGGTAAGACAGGATCTC  749
      ||  ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGTTTTTCTTTTCTTGAGAGCCATTCTAACTGAGGT-AGACAGGATCTC  749

seq1  AAAGTCGTTTTAACTT  765
       |||||| ||||||||
seq2  -AAGTCG-TTTAACTT  763

seq1: chr4_72071952_72073066
seq2: B6Ng01-180E19.g_64_1175 (reverse)

seq1  GAATTGATCTCACCTAAGGATAGACCAACCCTCACAATATGGACTAAAAG  50
      |||| |||||||| ||| |||||||  | |||||| |||| |||||||||
seq2  GAATGGATCTCACTTAA-GATAGAC--AACCTCAC-ATATTGACTAAAAG  46

seq1  ATTAGGATATGCGTAGATGGTTGTGTGCATACCATCTGTTCACATTTGTG  100
      |||||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  ATTAGGATATGCGTAGATGG-TGTGTGCATACCATCTGGTCACATTTGTG  95

seq1  TTGAACACACTTGACC-AAGGTCA-GGCCAAGGGTTTGGG-ATTCATTAG  147
      |||||||||| ||||| ||||||| ||||||||||||||| |||||||||
seq2  TTGAACACAC-TGACCAAAGGTCAGGGCCAAGGGTTTGGGAATTCATTAG  144

seq1  GTAGTGGGCAGAGAACAGCTGCTTTTGATGTTTGGGTACTTGGTAGTGTC  197
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGGCAGAG-ACAGCTGCTTTTGATGTTTGGGTACTTGGTAGTGTC  193

seq1  ATGGAATGCCTTTATTGACTTCTCCCTTCACCCAGCTTATTTACTTCTTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATGCCTTTATTGACTTCTCCCTTCACCCAGCTTATTTACTTCTTC  243

seq1  TCCCAAACTTAAGCCTCTAGGATCCTATCCAGGGATCAGTACTCCAAGTC  297
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCC-AACTTAAGCCTCTAGGATCCTATCCAGGGATCAGTACTCCAAGTC  292

seq1  AGAA-GGTAAAAACTTTCTGCATTTACTGCCTGGTTC-CAGTCTCAACAA  345
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAGGGTAAAAACTTTCTGCATTTACTGCCTGGTTCGCAGTCTCAACAA  342

seq1  GGGTTGGGGGTTGTCAAGGACTAAGGATACCTGGTAGGCAAATAAGAAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGGGGTTGTCAAGGACTAAGGATACCTGGTAGGCAAATAAGAAAA  392

seq1  CACACAATTGAGATACAATATTGACAGGCTGTTCTTTTTGGCGTGTGAGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAATTGAGATACAATATTGACAGGCTGTTCTTTTTGGCGTGTGAGC  442

seq1  CCTTGAACTTGGGAGTCACGATATTCACCTAGAATTGACTCAGCCCAGTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTTGGGAGTCACGATATTCACCTAGAATTGACTCAGCCCAGTC  492

seq1  TTTTATTGAAATCATACAAGGAAATTGGGTTACAAAATTCATAGGGGATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGAAATCATACAAGGAAATTGGGTTACAAAATTCATAGGGGATG  542

seq1  GGTAAATGCTTCTCTATTTTCATGTGCCAACATTTTCTTGTGACACAGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATGCTTCTCTATTTTCATGTGCCAACATTTTCTTGTGACACAGAA  592

seq1  TGGTACAGATTTAGAACAGAAAAAAAAAGGGAACTATACAATCTCAGACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAGATTTAGAACAGAAAAAAAAAGGGAACTATACAATCTCAGACA  642

seq1  TAAAAATTTTACAGCAAGCACAATTTTTTTATATCTCCCAACCACCAGTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTTACAGCAAGCACAATTTTTTTATATCTCCCAACCACCAGTC  692

seq1  TTCAGTGATGTCAGGGGTAGAGGTATTGAGATACAAAAATCAGTATCTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGATGTCAGGGGTAGAGGTATTGAGATACAAAAATCAGTATCTTT  742

seq1  CAGACATATATTAGACAGTGTGGTTTCATAGAAGGGCAAACATGAGGTCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATATATTAGACAGTGTGGTTTCATAGAAGGGCAAACATGAGGTCA  792

seq1  AACTGCTGACCCTATCGTCTTTATAATTTTCGGATCCCATCTCTCTGTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGACCCTATCGTCTTTATAATTTTCGGATCCCATCTCTCTGTCT  842

seq1  ACAAAAACATCCTCACTCAACCTGTATGGAGAATGACTAGTGGGTTGCAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACATCCTCACTCAACCTGTATGGAGAATGACTAGTGGGTTGCAA  892

seq1  CTATCATCCCTAAACCCAAGGAACCCATTGCTAACTTTCTGGGAAATATC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATCCCTAAACCCAAGGAACCCATTGCTAACTTTCTGGGAAATATC  942

seq1  TGTATATTATTCAACCCTCAATTTTATGATAAAAATCCTATTTTTATTAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTATTCAACCCTCAATTTTATGATAAAAATCCTATTTTTATTAT  992

seq1  ACAGAAATGAGACTAAGACTGGGGGAACAGCTGCAGAATTACTCATCTCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATGAGACTAAGACTGGGGGAACAGCTGCAGAATTACTCATCTCT  1042

seq1  GCCTGCGGCTCTAGATTACTTTCATTTCCACCTAGAGCGAGTGACTGTAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCGGCTCTAGATTACTTTCATTTCCACCTAGAGCGAGTGACTGTAA  1092

seq1  CATACATTTCTCTTGAATTC  1115
      ||||||||||||||||||||
seq2  CATACATTTCTCTTGAATTC  1112