BAC Information

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BAC

Clone NameB6Ng01-180G10
Chromosome4 (Build37)
Map Location 51,990,532 - 52,169,900
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666681, LOC100040814, LOC384015
Downstream geneLOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180G10.bB6Ng01-180G10.g
ACCGA006842GA006843
length1,2001,194
definitionB6Ng01-180G10.b B6Ng01-180G10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,168,719 - 52,169,900)(51,990,532 - 51,991,725)
sequence
gaattccaagcttttcttggaaccctctccattttattattgacacaggg
aagtatcagttctcagccttcacctaagaggaggatgggagacatttcct
ggcacgattccataactcattattaagaactacttttgtaagttaaatat
cagaccaaacagctcagacctactgtgcatttttcatttttgtctccctt
cctgagaaaagactatctgtctattccgtctaccatgtttagcttaggta
ctcgaacaaatgttttagagaaaattgaaaaaaattcaaagactgggtag
gtattgattatcttagtagtagagttaaaggcaggtaggatgagatcatt
gttttctatttagtgcaactgaattgcatcagtctgattattatgtattg
cttcctgtaagttgaaaagctattttgggaaaaatgaaagtcaaatagag
ttagtggagaatttttaacagagaagcagccaatcttccaatggactact
ctaaggggctgttttcagagcactcgtttatctactgacatcactgttat
ctaagggaccatatgctttcagattttgatcacgtaactcaaaagcagga
agccctttgcattttattcaaggttaataaaaagtaggcttcaacaatta
ctgaatgagcaaagcattttattataaatggagattcaaaaatattttca
gagaaagcaaattcagtatcccaagctaatgccaaaaagctaaatttgtt
cattgttgatgtctgttacacatctgcctatagagtatagtgacaaactt
gtgaataatacttaattaaatgtaaagaagtgttttttacttttagacaa
tcaattgaaaatatttaagtatgtattgctttactgatgaaaaagtttat
tatgtgcttaaagattgaaattatatgatgcttcccaataaaatttaaag
cctagttttttttcttttccaattttacattactaataaaaaacgaaggt
ctaacatgacactgtttagtaatacctgtactttagttttttgaccttgc
aacacttaggaaatggtgtaggaagagggtgttcttttgttccatacttt
ttctgaaatccccattgcattgttccaaagatcttcctcatggggaattt
ttaatggcttgggaccataagctaaaggaaacaaaatccatcaaatcatc

gaattcactgccgggcagtggtggtgcatgcctttaatcccagcactaag
gaggcagaggcaagtggatttctgagttcttgtccagcctggtctacaaa
gtgagttccaggacagcaagagctttacagagaaaccctgtcttgaaaaa
ccaaaaacaccaaaaacaccaaaaaaaaaaaaaaaaaaaaattcatacag
tgagtttggtcccttcctcaatcctcccagattcacctcttaattttcct
ctcccctcctcctccttcttcctcttctctttcctttcccctctccctct
cctcctcctgctcccaatcgctcatcaggggtggggcctcatgagcgtct
cccatctccatgcttgcattttaactggcttgatattgtgcaggtgttta
gcagacagccacaactgctgtaagttccggagtgtcaaagttcacaatgt
tcagaaggttccatctctagtccttcccaacctctagctattacagtctt
tctgatcctattctgcaacaatccttgaaactggaaggagctatggtata
ggtgtcacaattatgggtaagcactctatagagacttattttgtgcttat
gaaaccagtagtgagcttccacattaaccatcattcacttcaattctctg
atgagttcccgagctgcactaatctctgggtaaagagatgggaattcaga
aagcaacttacaatgctctttttagcaaaagaaaattagaaggttcacct
tgagaaacctgtgaccttgacactcatgggttcttggctagagttaaaag
taacaagcatatgattctccctggattcattctcttttctttaagtattt
ttctacaagcctactttgttttctgttatcaaatgaagaatcctgatgaa
tttctctcttgtttctcttaaatttgtctgatttcccagtgtttccatat
tgaagaactatgaaacaggctggcctaaacctatttatttgaatatttat
tatttatttattatttaattattatttattatttctggcaattgggacaa
tgatggcagtttcaattactttctgtatcttctgtgaaagagatatttca
gatatccaatttagatggaaaggataggccaacaggtattggggggagac
aacagaacggatacattggcactgcagggatggatattatttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_52168719_52169900
seq2: B6Ng01-180G10.b_46_1245 (reverse)

seq1  GATGATCTGATGGGATTTTTGTTCCTTTGCTTTATGGGGTCCCCAACCCA  50
      |||||| |||| |||||||  |||||||   ||||||    ||||| |||
seq2  GATGATTTGAT-GGATTTTGTTTCCTTTAGCTTATGG---TCCCAAGCCA  46

seq1  TTAAAA--TCCCCATGAGGAAGATCTTT-GAACAATGCATTGGGG-TTTC  96
      ||||||  |||||||||||||||||||| |||||||||| ||||| ||||
seq2  TTAAAAATTCCCCATGAGGAAGATCTTTGGAACAATGCAATGGGGATTTC  96

seq1  AG-AAAAGTATGGAACAAAAG-ACACCCTC-TCCTACACCATTTCCT-AG  142
      || |||||||||||||||||| |||||||| |||||||||||||||| ||
seq2  AGAAAAAGTATGGAACAAAAGAACACCCTCTTCCTACACCATTTCCTAAG  146

seq1  TGTTGC-AGGTC-AAAAACT-AAGTACAGTTA-TACTAAACAGTGTCATG  188
      |||||| ||||| ||||||| |||||||| || |||||||||||||||||
seq2  TGTTGCAAGGTCAAAAAACTAAAGTACAGGTATTACTAAACAGTGTCATG  196

seq1  -TAGA-CTTCGTTTTT--ATAGT-ATGTAAAATTGGAAA--GAAAAAAAC  231
       |||| ||||||||||   |||| |||||||||||||||   ||||||||
seq2  TTAGACCTTCGTTTTTTATTAGTAATGTAAAATTGGAAAAGAAAAAAAAC  246

seq1  TAGGC-TTAAATTT--ATGGGAAGCATCATATAATTTCAATCTTTAAGCA  278
      ||||| ||||||||   |||||||||||||||||||||||||||||||||
seq2  TAGGCTTTAAATTTTATTGGGAAGCATCATATAATTTCAATCTTTAAGCA  296

seq1  CATAATAAACTTTTTCATCAGTAAAGCAATACATACTTAAATATTTTCAA  328
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAAACTTTTTCATCAGTAAAGCAATACATACTTAAATATTTTCAA  346

seq1  TTGATTGTCT-AAAGTAAAAAACACTTCTTTACATTTAATTAAGTATTAT  377
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGTCTAAAAGTAAAAAACACTTCTTTACATTTAATTAAGTATTAT  396

seq1  TCACAAGTTTGTCACTATACTCTATAGGCAGATGTGTAACAGACATCAAC  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGTTTGTCACTATACTCTATAGGCAGATGTGTAACAGACATCAAC  446

seq1  AATGAACAAATTTAGCTTTTTGGCATTAGCTAGATAATACTGAATTTGCT  477
      ||||||||||||||||||||||||||||||| |   ||||||||||||||
seq2  AATGAACAAATTTAGCTTTTTGGCATTAGCTTG-GGATACTGAATTTGCT  495

seq1  TTCTCTGAAAATATTTTTGAATCTCCATTTATAATAAAATGCTTTGCTCA  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAAAATATTTTTGAATCTCCATTTATAATAAAATGCTTTGCTCA  545

seq1  TTCAGTAATTGTTGAAGCCTACTTTTTATTAACCTTGAATAAAATGCAAA  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAATTGTTGAAGCCTACTTTTTATTAACCTTGAATAAAATGCAAA  595

seq1  GGGCTTCCTGCTTTTGAGTTACGTGATCAAAATCTGAAAGCATATGGTCC  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCCTGCTTTTGAGTTACGTGATCAAAATCTGAAAGCATATGGTCC  645

seq1  CTTAGATAACAGTGATGTCAGTAGATAAACGAGTGCTCTGAAAACAGCCC  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATAACAGTGATGTCAGTAGATAAACGAGTGCTCTGAAAACAGCCC  695

seq1  CTTAGAGTAGTCCATTGGAAGATTGGCTGCTTCTCTGTTAAAAATTCTCC  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGTAGTCCATTGGAAGATTGGCTGCTTCTCTGTTAAAAATTCTCC  745

seq1  ACTAACTCTATTTGACTTTCATTTTTCCCAAAATAGCTTTTCAACTTACA  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTCTATTTGACTTTCATTTTTCCCAAAATAGCTTTTCAACTTACA  795

seq1  GGAAGCAATACATAATAATCAGACTGATGCAATTCAGTTGCACTAAATAG  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAATACATAATAATCAGACTGATGCAATTCAGTTGCACTAAATAG  845

seq1  AAAACAATGATCTCATCCTACCTGCCTTTAACTCTACTACTAAGATAATC  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATGATCTCATCCTACCTGCCTTTAACTCTACTACTAAGATAATC  895

seq1  AATACCTACCCAGTCTTTGAATTTTTTTCAATTTTCTCTAAAACATTTGT  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTACCCAGTCTTTGAATTTTTTTCAATTTTCTCTAAAACATTTGT  945

seq1  TCGAGTACCTAAGCTAAACATGGTAGACGGAATAGACAGATAGTCTTTTC  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTACCTAAGCTAAACATGGTAGACGGAATAGACAGATAGTCTTTTC  995

seq1  TCAGGAAGGGAGACAAAAATGAAAAATGCACAGTAGGTCTGAGCTGTTTG  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGGGAGACAAAAATGAAAAATGCACAGTAGGTCTGAGCTGTTTG  1045

seq1  GTCTGATATTTAACTTACAAAAGTAGTTCTTAATAATGAGTTATGGAATC  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATATTTAACTTACAAAAGTAGTTCTTAATAATGAGTTATGGAATC  1095

seq1  GTGCCAGGAAATGTCTCCCATCCTCCTCTTAGGTGAAGGCTGAGAACTGA  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGGAAATGTCTCCCATCCTCCTCTTAGGTGAAGGCTGAGAACTGA  1145

seq1  TACTTCCCTGTGTCAATAATAAAATGGAGAGGGTTCCAAGAAAAGCTTGG  1177
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCCTGTGTCAATAATAAAATGGAGAGGGTTCCAAGAAAAGCTTGG  1195

seq1  AATTC  1182
      |||||
seq2  AATTC  1200

seq1: chr4_51990532_51991725
seq2: B6Ng01-180G10.g_66_1259

seq1  GAATTCACTGCCGGGCAGTGGTGGTGCATGCCTTTAATCCCAGCACTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCCGGGCAGTGGTGGTGCATGCCTTTAATCCCAGCACTAAG  50

seq1  GAGGCAGAGGCAAGTGGATTTCTGAGTTCTTGTCCAGCCTGGTCTACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAAGTGGATTTCTGAGTTCTTGTCCAGCCTGGTCTACAAA  100

seq1  GTGAGTTCCAGGACAGCAAGAGCTTTACAGAGAAACCCTGTCTTGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCCAGGACAGCAAGAGCTTTACAGAGAAACCCTGTCTTGAAAAA  150

seq1  CCAAAAACACCAAAAACACCAAAAAAAAAAAAAAAAAAAAATTCATACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAACACCAAAAACACCAAAAAAAAAAAAAAAAAAAAATTCATACAG  200

seq1  TGAGTTTGGTCCCTTCCTCAATCCTCCCAGATTCACCTCTTAATTTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGGTCCCTTCCTCAATCCTCCCAGATTCACCTCTTAATTTTCCT  250

seq1  CTCCCCTCCTCCTCCTTCTTCCTCTTCTCTTTCCTTTCCCCTCTCCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCCTCCTCCTTCTTCCTCTTCTCTTTCCTTTCCCCTCTCCCTCT  300

seq1  CCTCCTCCTGCTCCCAATCGCTCATCAGGGGTGGGGCCTCATGAGCGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCTGCTCCCAATCGCTCATCAGGGGTGGGGCCTCATGAGCGTCT  350

seq1  CCCATCTCCATGCTTGCATTTTAACTGGCTTGATATTGTGCAGGTGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTCCATGCTTGCATTTTAACTGGCTTGATATTGTGCAGGTGTTTA  400

seq1  GCAGACAGCCACAACTGCTGTAAGTTCCGGAGTGTCAAAGTTCACAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGCCACAACTGCTGTAAGTTCCGGAGTGTCAAAGTTCACAATGT  450

seq1  TCAGAAGGTTCCATCTCTAGTCCTTCCCAACCTCTAGCTATTACAGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGGTTCCATCTCTAGTCCTTCCCAACCTCTAGCTATTACAGTCTT  500

seq1  TCTGATCCTATTCTGCAACAATCCTTGAAACTGGAAGGAGCTATGGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCCTATTCTGCAACAATCCTTGAAACTGGAAGGAGCTATGGTATA  550

seq1  GGTGTCACAATTATGGGTAAGCACTCTATAGAGACTTATTTTGTGCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCACAATTATGGGTAAGCACTCTATAGAGACTTATTTTGTGCTTAT  600

seq1  GAAACCAGTAGTGAGCTTCCACATTAACCATCATTCACTTCAATTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAGTAGTGAGCTTCCACATTAACCATCATTCACTTCAATTCTCTG  650

seq1  ATGAGTTCCCGAGCTGCACTAATCTCTGGGTAAAGAGATGGGAATTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCCCGAGCTGCACTAATCTCTGGGTAAAGAGATGGGAATTCAGA  700

seq1  AAGCAACTTACAATGCTCTTTTTAGCAAAAGAAAATTAGAAGGTTCACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTTACAATGCTCTTTTTAGCAAAAGAAAATTAGAAGGTTCACCT  750

seq1  TGAGAAACCTGTGACCTTGACACTCATGGGTTCTTGGCTAGAGTT-AAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGAGAAACCTGTGACCTTGACACTCATGGGTTCTTGGCTAGAGTTAAAAG  800

seq1  TAACAAGCATATGATTCTCCCTGGATTCATTCTCTTTTCTTTAAGTA-TT  848
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAACAAGCATATGATTCTCCCTGGATTCATTCTCTTTTCTTTAAGTATTT  850

seq1  TTCTACAAGCCTACTTTGTTTTCTGTTATCAAATG-AGAATCCTGATGAA  897
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCTACAAGCCTACTTTGTTTTCTGTTATCAAATGAAGAATCCTGATGAA  900

seq1  -TTCTCTCTTGTTTCTCTTAAA-TTGTCTGATTT-CCAGTGTTTCCATAT  944
       ||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  TTTCTCTCTTGTTTCTCTTAAATTTGTCTGATTTCCCAGTGTTTCCATAT  950

seq1  TG-AGAACTATGAAACAAGCTGG-CTAAA-CTATTTATTTGATTATTTAT  991
      || |||||||||||||| ||||| ||||| |||||||||||| |||||| 
seq2  TGAAGAACTATGAAACAGGCTGGCCTAAACCTATTTATTTGAATATTTA-  999

seq1  TTATTTATTTATTTATTTATTTATTTATTTAATTTATTTATTTCTGTGCA  1041
          ||||||||||| ||||||| |||||  ||||| ||||||||| |||
seq2  ----TTATTTATTTA-TTATTTAATTATT--ATTTA-TTATTTCTG-GCA  1040

seq1  ATTGGCACAATGAATGGCAGTTTCAATTACTTTCTGTATC-TCTGTGAAA  1090
      ||||| |||||| ||||||||||||||||||||||||||| |||||| ||
seq2  ATTGGGACAATG-ATGGCAGTTTCAATTACTTTCTGTATCTTCTGTG-AA  1088

seq1  AGAGATA-TTCAG-TATCCCAATTAGATGAAAGAGAAAG--CAACAAAGT  1136
      ||||||| ||||| ||||| | ||||||| ||  || ||  |||| | ||
seq2  AGAGATATTTCAGATATCCAATTTAGATGGAAAGGATAGGCCAAC-AGGT  1137

seq1  ATTGGGGGAGAAAAACAAGAACAGAATAGAATTGGAAATG--AGGATGGA  1184
      |||||||| || | |  ||||| | |||  ||||| | ||   |||||||
seq2  ATTGGGGG-GAGACAACAGAAC-GGATA-CATTGGCACTGCAGGGATGGA  1184

seq1  TATTAATTAT  1194
      ||||| ||||
seq2  TATTATTTAT  1194