BAC Information

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BAC

Clone NameB6Ng01-180M02
Chromosome4 (Build37)
Map Location 26,150,951 - 26,152,118
singlet/doubletsinglet
Overlap genenone
Upstream geneFhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732, Fut9, LOC100040780, Hn1-ps1
Downstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180M02.bB6Ng01-180M02.g
ACCGA007102GA007103
length1,2081,157
definitionB6Ng01-180M02.b B6Ng01-180M02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagtcccatacctaaatgtaataaaacaatttactacaaaccaa
tagtcaatgtcaaattaaatagagagacacttgaagcaatcccactaaaa
tcatggacaaggaagctcactctccccaaatctattcaatatagtacttg
aagttctagctagagaataagacaacaaaaggagatcaaggggatacaaa
ttggcaaagaagaaataaaggtgtcactatttgcagggttatgatagtat
acataagctaccccaaaattctaccagagaacttccacagctggtaaaca
acttcagcaaagtggctggatatcagattaactcaaataaaccagtaata
ttcctttatacaaatgataaacactagggaaacaactaccatcacaatag
ccacaaatagtataaaatatcttggagtacctgtagccaaacaagtgaaa
gatctctatgacaataatttcaagtctctcaagagagaaatcaaagatct
cagaaagtggaaagatctttcatgctcatggattggcagaattaacatag
taaaaatggccatcctaccaaaggcaatctacagattcaatgcaatcctc
atcaaaatcccaacacaattcttcaaagacatggaaagagcaattctcaa
attcatctggaaaggcaaagacaaacaaacaaacaagaacaaaaacaaac
aaacaaacacaagaaatgcagaatagctaaaacaatccttaacaacaaaa
aaaaactgctgggggaatcactatctctgatctcaactatagtacagagc
aatcgtaataaaaactgcatgttactggtacagaaatagacatgttgatg
accttcaattcatgaaatagaattgaaaactcagaaataaagccacaaac
ttatagacattttgtctttgacaaagatgccaaaaatatacaatggataa
aagaaaacatcttcaagaaatggtgctggtcttaactgtctgcatgtaga
aaatgaaaataaacccatttttttttttacttgcatgatctcagtccaag
tggagcagactcaacataaagcagatacactgaatcgaatgaagagaaat
ggcaagcacttgaactcaatgccataggaaacttctagactacatggact
ctatacctagatccagatggaatatattgggcaaacctcttggaacctga
gagaagct

gaattcctctgaggtataaaaatacactttaggactgaacttagggaaat
aaattgcttgaaaagaagaaaagaaaacttcactataaattgaagataca
aactgttgagtcttactactaccactactactactcctactgctactact
acttcaaaattgccatgtcttgaggtcccattgtagtagagaacaactga
tggcatttgtcagatgtttaaaacatatttaacattccccaaatattatg
gggtatgaattgtttttatgtgattaatatatggggaactgcggtaaact
gagctttaattagttcattaatagtaacccagttatggataaggggtcag
gctatggaaagatctttttctgctcaattaagtatgttctgcacaatgag
gaacgaaataaatgaagtttagtcttaaaatatttctaactaatgctatc
ctattcttgctggaaattttgcattaattgattccttccgccatgttata
tttagattgttatagcaacccacttcccactcattctctttgctccccac
aagcaaacatcatacttatagaaattatgtttcaaatataatttttcctg
actcataaaatatcaatttgcttcttaccttcctgaaatcatttgtcact
agagtaacctttttataaaatgagccaacttaggtcacgccatcttttgg
ttctcagcaggtccttcaccactgaactcacatttttcttttacagctca
gtgctttgctcaccatccgcaaagaacttacactgtattgtcacttagta
tttttgtcagagatattagattttaatatatttcctaaaacaaaatttca
gaagtgtagaacagacagtgataaaccacaaacgctcagtaggaagctaa
caacaatcaatgctataaaaacattgagctttttttcttcacccaagcag
gtatatatgcaaccccatcttgtgtatacactggtcacagttttggcaaa
agtgtggctataggcacagagcacacttttcgtgttgtttttttttctat
ggttgatcagatccaaagttgttttggagcatttccttatgcgctatgac
ttgactgtgaatcaatggtcagttacatacagaacaaatttgggacatat
ataatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_26150951_26152118
seq2: B6Ng01-180M02.g_67_1223 (reverse)

seq1  ATATATATATAT-TCACAAAAATTTG-TCTGTATGTACCTGACCCATGGA  48
      |||| ||||||| || |  ||||||| |||||||||| |||| |||| ||
seq2  ATAT-TATATATGTCCC--AAATTTGTTCTGTATGTAACTGA-CCATTGA  46

seq1  ATCACAAGTTCCAGTCATAGCGCATAAGGAAATGCCTTCAAAACAACTTT  98
       |||||   || |||||||||||||||||||||| || ||||||||||||
seq2  TTCACA--GTCAAGTCATAGCGCATAAGGAAATG-CTCCAAAACAACTTT  93

seq1  GGATCTGATCAACCATAG--AAAAAAACAACACCGAAAAGTTGGTGCTCT  146
      ||||||||||||||||||  |||||||||||| ||||||||  |||||||
seq2  GGATCTGATCAACCATAGAAAAAAAAACAACA-CGAAAAGT--GTGCTCT  140

seq1  TGGTGCCTATAGCCACACTTTTGCCAAAACTGTGACCAGTGTATTACACA  196
        ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  --GTGCCTATAGCCACACTTTTGCCAAAACTGTGACCAGTGTA-TACACA  187

seq1  AGATGGGGTTGCATATATACCCTGCTTGGGTGAAGAAAAAAAGCTCAATG  246
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGATGGGGTTGCATATATA-CCTGCTTGGGTGAAGAAAAAAAGCTCAATG  236

seq1  TTTTTATAGCATTGATTGTTGTTAGCTTCCTACCTGAGCGTTTGTGGTTT  296
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTTTATAGCATTGATTGTTGTTAGCTTCCTA-CTGAGCGTTTGTGGTTT  285

seq1  ATCACTGTCTGTTCTACACTTCTGAAATTTTGTTTTAGGAAATATATTAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGTCTGTTCTACACTTCTGAAATTTTGTTTTAGGAAATATATTAA  335

seq1  AATCTAATATCTCTGACAAAAATACTAAGTGACAATACAGTGTAAGTTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAATATCTCTGACAAAAATACTAAGTGACAATACAGTGTAAGTTCT  385

seq1  TTGCGGATGGTGAGCAAAGCACTGAGCTGTAAAAGAAAAATGTGAGTTCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGGATGGTGAGCAAAGCACTGAGCTGTAAAAGAAAAATGTGAGTTCA  435

seq1  GTGGTGAAGGACCTGCTGAGAACCAAAAGATGGCGTGACCTAAGTTGGCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAAGGACCTGCTGAGAACCAAAAGATGGCGTGACCTAAGTTGGCT  485

seq1  CATTTTATAAAAAGGTTACTCTAGTGACAAATGATTTCAGGAAGGTAAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATAAAAAGGTTACTCTAGTGACAAATGATTTCAGGAAGGTAAGA  535

seq1  AGCAAATTGATATTTTATGAGTCAGGAAAAATTATATTTGAAACATAATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTGATATTTTATGAGTCAGGAAAAATTATATTTGAAACATAATT  585

seq1  TCTATAAGTATGATGTTTGCTTGTGGGGAGCAAAGAGAATGAGTGGGAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAGTATGATGTTTGCTTGTGGGGAGCAAAGAGAATGAGTGGGAAG  635

seq1  TGGGTTGCTATAACAATCTAAATATAACATGGCGGAAGGAATCAATTAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGCTATAACAATCTAAATATAACATGGCGGAAGGAATCAATTAAT  685

seq1  GCAAAATTTCCAGCAAGAATAGGATAGCATTAGTTAGAAATATTTTAAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATTTCCAGCAAGAATAGGATAGCATTAGTTAGAAATATTTTAAGA  735

seq1  CTAAACTTCATTTATTTCGTTCCTCATTGTGCAGAACATACTTAATTGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTTCATTTATTTCGTTCCTCATTGTGCAGAACATACTTAATTGAG  785

seq1  CAGAAAAAGATCTTTCCATAGCCTGACCCCTTATCCATAACTGGGTTACT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAGATCTTTCCATAGCCTGACCCCTTATCCATAACTGGGTTACT  835

seq1  ATTAATGAACTAATTAAAGCTCAGTTTACCGCAGTTCCCCATATATTAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGAACTAATTAAAGCTCAGTTTACCGCAGTTCCCCATATATTAAT  885

seq1  CACATAAAAACAATTCATACCCCATAATATTTGGGGAATGTTAAATATGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAAAACAATTCATACCCCATAATATTTGGGGAATGTTAAATATGT  935

seq1  TTTAAACATCTGACAAATGCCATCAGTTGTTCTCTACTACAATGGGACCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACATCTGACAAATGCCATCAGTTGTTCTCTACTACAATGGGACCT  985

seq1  CAAGACATGGCAATTTTGAAGTAGTAGTAGCAGTAGGAGTAGTAGTAGTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACATGGCAATTTTGAAGTAGTAGTAGCAGTAGGAGTAGTAGTAGTG  1035

seq1  GTAGTAGTAAGACTCAACAGTTTGTATCTTCAATTTATAGTGAAGTTTTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAGTAAGACTCAACAGTTTGTATCTTCAATTTATAGTGAAGTTTTC  1085

seq1  TTTTCTTCTTTTCAAGCAATTTATTTCCCTAAGTTCAGTCCTAAAGTGTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTTTTCAAGCAATTTATTTCCCTAAGTTCAGTCCTAAAGTGTA  1135

seq1  TTTTTATACCTCAGAGGAATTC  1168
      ||||||||||||||||||||||
seq2  TTTTTATACCTCAGAGGAATTC  1157


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