BAC Information

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BAC

Clone NameB6Ng01-181A16
Chromosome4 (Build37)
Map Location 90,832,440 - 90,833,488
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp352, LOC619842, LOC435792, Ppia-ps4_804.1, LOC664840, LOC664848
Downstream geneLOC100042274, Elavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181A16.bB6Ng01-181A16.g
ACCGA007308GA007309
length1,2211,059
definitionB6Ng01-181A16.b B6Ng01-181A16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccaaaaggcagttatattaacaacctctttttgtatcaaaatt
atgcaaaatcagtggggattcagggtgccttatttttcttttaattaaac
atctcataaccacagttaatgcaggcttataaaaaccatgtttaaattta
ggttggcttgaatggaagaaacatggtgagggaatgtgagtgaccctgtg
tgattgcgtcactttcctgattgtgaacagacactcctccagcactttat
ggtttgtattatcagtctaggttctagagtctctacttccacgcagaaga
agatgcttgcctcatcctggaaaaccttatttgtaaaataagcagggtgg
gtggtgaattctgagtattaaagttctaagagtctgagcagtacaggatg
aaataccaaggtgggaaggaggaaagccaggtggattctctctctctctc
tctttttttttttttaaagtagggcatgcacttaaaaaaaaaaaatgtat
tcactttgcatctcactgtccccctcccggtcaccccatcccacaatcct
tcctcccttctcctctgagtgtgtaggcgggctctcctgggtatctacac
cccccacccccaggcccattaagtttctgcaaggctaggcaatcctctcc
cactgaggccagacaaggcagctctgatagaagaacatatcccagggaca
ggcaacagctcttgggatactccctactccagttgtcaggacccacatga
agagcaagctgcacaaatgctacgtatatgtggggaggcctaggtccagc
ccatgtatatactttggttggtggctctgtctctgagagctccaacggtc
caggttagttgactctgttgttctacttgtggagttcccatccatcccct
ccagggccagcaatcctttcctcttattctttccttgagtccccaagctt
ccacccactgtttattcttgtgaatgtaaggcattttgttctgagtcagc
tgctgggtgagctttctcagaaggataaaccctgcctagtctctgtctaa
aaagcataaacagaagtatcattatatgtcaggaataatgcttgcctgcc
attggcagtctcaagattgagccaagtattggcctgccaatctcttagtt
cttggctcaattccatgacgtcattctgatagcaagtatcatacttctct
gggctggaaagagactctggc

gaattctatagattgggcaatactccactgataaccgtgtgtccattaga
tttgaagaacaaaaattagatttacattctggcctacctcttacaatggc
ccagtctgtacagataatctgtcttttatgcttcatcagaaaatagaact
aaacagtatttttttgttcatatggtaagggtggatgaaatgatgggatg
tatgagagacatccccccttcgtacacacataatgagaacatgtgtgtta
catattctgagctctctgtaactagaaattggccattgtcacttgcactt
ggaagagactcaaagacaattgatggcaaagggaagctggaggtaagaga
ctcttacctgagcatcttaactgattgtaattaaatatatattacctctc
tacttgatcctgtattgtaagtgggggcaaacattagagctgcagtaacc
actgaccaagtcctccagagatggatgtagggaagcatggcattgagact
atggcttggtgatggcggaggagaagagaggaacacattttatcgtcatt
tatagtgtacctttataaatttagtcccatttgtccctttataaatttag
tctctcatgaactgaagttattttaattggatggttctcctcttctttca
cactgacacagatgattatcttaggcctctatgcctttggtgaaaaaaaa
ttcaatgaaatttgattgccttgaaacgtgagcactaagggatgatgaaa
aggaaactataacaaagcagatttgaatttctgtgcctatagcaaagtga
ggtctaccacaatagtacactgtacccaacaaatctctgcgcagccaaat
gaaggcagtgctaaggagcaataatgcgctgggaggaaagaatggggctt
ttcaagatgctagagagctgagagcttagaggggaaaggctcaatggcca
cacatctcctgcttttgttccctggtttcagaagagtatactaatgatat
gggctttaataacccaaaatgcttcataaccaggcagaagcctaaggttg
caaacatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_90832440_90833488
seq2: B6Ng01-181A16.g_65_1123

seq1  GAATTCTATAGATTGGGCAATACTCCACTGATAACCGTGTGTCCATTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGATTGGGCAATACTCCACTGATAACCGTGTGTCCATTAGA  50

seq1  TTTGAAGAACAAAAATTAGATTTACATTCTGGCCTACCTCTTACAATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGAACAAAAATTAGATTTACATTCTGGCCTACCTCTTACAATGGC  100

seq1  CCAGTCTGTACAGATAATCTGTCTTTTATGCTTCATCAGAAAATAGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTGTACAGATAATCTGTCTTTTATGCTTCATCAGAAAATAGAACT  150

seq1  AAACAGTATTTTTTTGTTCATATGGTAAGGGTGGATGAAATGATGGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTATTTTTTTGTTCATATGGTAAGGGTGGATGAAATGATGGGATG  200

seq1  TATGAGAGACATCCCCCCTTCGTACACACATAATGAGAACATGTGTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAGACATCCCCCCTTCGTACACACATAATGAGAACATGTGTGTTA  250

seq1  CATATTCTGAGCTCTCTGTAACTAGAAATTGGCCATTGTCACTTGCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCTGAGCTCTCTGTAACTAGAAATTGGCCATTGTCACTTGCACTT  300

seq1  GGAAGAGACTCAAAGACAATTGATGGCAAAGGGAAGCTGGAGGTAAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGACTCAAAGACAATTGATGGCAAAGGGAAGCTGGAGGTAAGAGA  350

seq1  CTCTTACCTGAGCATCTTAACTGATTGTAATTAAATATATATTACCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACCTGAGCATCTTAACTGATTGTAATTAAATATATATTACCTCTC  400

seq1  TACTTGATCCTGTATTGTAAGTGGGGGCAAACATTAGAGCTGCAGTAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGATCCTGTATTGTAAGTGGGGGCAAACATTAGAGCTGCAGTAACC  450

seq1  ACTGACCAAGTCCTCCAGAGATGGATGTAGGGAAGCATGGCATTGAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCAAGTCCTCCAGAGATGGATGTAGGGAAGCATGGCATTGAGACT  500

seq1  ATGGCTTGGTGATGGCGGAGGAGAAGAGAGGAACACATTTTATCGTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTGGTGATGGCGGAGGAGAAGAGAGGAACACATTTTATCGTCATT  550

seq1  TATAGTGTACCTTTATAAATTTAGTCCCATTTGTCCCTTTATAAATTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGTACCTTTATAAATTTAGTCCCATTTGTCCCTTTATAAATTTAG  600

seq1  TCTCTCATGAACTGAAGTTATTTTAATTGGATGGTTCTCCTCTTCTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATGAACTGAAGTTATTTTAATTGGATGGTTCTCCTCTTCTTTCA  650

seq1  CACTGACACAGATGATTATCTTAGGCCTCTATGCCTTTGGTGAAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACACAGATGATTATCTTAGGCCTCTATGCCTTTGGTGAAAAAAAA  700

seq1  TTCAATGAAATTTGATTGCCTTGAAACGTGAGCACTAAGGGATGATGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGAAATTTGATTGCCTTGAAACGTGAGCACTAAGGGATGATGAAA  750

seq1  AGGAAACTATAACAAAGCAGATTTGAA-TTCTGTGCCTATAGCAAAGTGA  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGAAACTATAACAAAGCAGATTTGAATTTCTGTGCCTATAGCAAAGTGA  800

seq1  GGTCTACCACAATAGTACACTGTACCCAACAAATCTCTGCGCAGCCAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACCACAATAGTACACTGTACCCAACAAATCTCTGCGCAGCCAAAT  850

seq1  GAAGGCAGTGCTAAGGAGCAATAATGCGCT-GGAGGAAAGAAT-GGGCTT  897
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  GAAGGCAGTGCTAAGGAGCAATAATGCGCTGGGAGGAAAGAATGGGGCTT  900

seq1  TTCAAGATGCTAGAGAGCTGAGAGCTAAGA-GGGAAAGGCTCAATGGCCA  946
      |||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  TTCAAGATGCTAGAGAGCTGAGAGCTTAGAGGGGAAAGGCTCAATGGCCA  950

seq1  CACATCTCCTGC-TTTGTTCCCTGG-TTCAGAAGAGTATACT-ATGATAT  993
      |||||||||||| |||||||||||| |||||||||||||||| |||||||
seq2  CACATCTCCTGCTTTTGTTCCCTGGTTTCAGAAGAGTATACTAATGATAT  1000

seq1  GGGC-TTAATAACCC-AAATGCTCAATAACCA-GCAG-AGCCTAAAGTTT  1039
      |||| |||||||||| |||||||  ||||||| |||| ||||| ||| ||
seq2  GGGCTTTAATAACCCAAAATGCTTCATAACCAGGCAGAAGCCT-AAGGTT  1049

seq1  GCAAACATCC  1049
      ||||||||||
seq2  GCAAACATCC  1059


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