BAC Information

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BAC

Clone NameB6Ng01-181E13
Chromosome4 (Build37)
Map Location 53,913,824 - 53,914,977
singlet/doubletsinglet
Overlap geneLOC100041280
Upstream geneLOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124
Downstream geneLOC666901, LOC100041303, LOC384018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181E13.bB6Ng01-181E13.g
ACCGA007486GA007487
length1,1501,097
definitionB6Ng01-181E13.b B6Ng01-181E13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
tggatggctatccagagtaggatctcgaggcaggctacttacctcttcct
gagcatggtccctctgctatcagagctgagttgggtacttagactcacct
actcacatgtacatgctctctgtctctttgtctgtttgtctgcctatctg
tctgtctgtccatccatccacctgtctgtccgtctgtccatcctctgtct
gtctgactctctggaaacacggcttcacaatgtatcttagcctccctttg
aatccactttataacctaggttggcttcaaactcacagaaatcctcctgc
ttcaacctcctaagtgctgggcttataggcctgtgccatcaggccacatc
ctttgaaaggatgtctgctctattcaggtctggcggttccaacccttctg
tggtatttccagttgtctttccctgtgtgtctgagcaactgggtctatag
tatggtggacatggtagaagaatccagattctggacaccagtatgaagaa
ctttgcagacctgcgtcgtgctgtgacatcagacaggatcatgtcactaa
ggttattgagttgttactatggtcagtcatccctatagactggcgatccg
gtggtgatgtcctttgcccagctcacgtttgctgttcctatagctgggac
ggggcctgggtttaagtaggtagattaggtcacatggagtcacgagcact
ggctgttagagtggggctggtgacctctgctcttggaggaagtgacatta
aagcacaggttaggaaccacatggtcttaaaccatcaattttattagctg
tgcataaaggctagaccttggagacacccagccatcccatctgtaaaaga
ggcttagaacctcctgtttgttgaagattaaatgagatttttgacacagc
ttggttcttacctgtgactgttcccaactgttttcatagattattttgtg
caaacaggaaaacacattttattaagtttttggcctttcctatgggcaga
aatttgtgatgcaggggtttctcaggcagggagactagaccattagtcag
acctcagggcacttctggttcctcagcctgttctctgggcacatcttcca
tagtacattgccacttagatacagttcatgccttgctctgtggggagtcc

gaattcaaataaatctatacttatcacaatgcacaaaattcaactctaaa
tgcatcaaagacctcaacataaaaccaaatatactgaacctgatagaaga
gaaagtaggaaatagccttgagctcctttgcacaggaaaaactttctgaa
gagaatgccaacagtacaggcactaaaatcaacaattaggaaatggaact
tcatgaagctagaaaacttctgcatagcaaaagacactgattcagactaa
gcagcagcctacagaatagaaaaagggggttggtttggtttggtttgttt
atcaattacatattatatatataatatatatatataactaaaagaaactg
gatatcatgaaagcaaataaccccatttaaaatggaaacagatctaaaca
gaattttcaaaaagaagaaattcaaatggctgagaaacacttaaagatat
atacagcattcaggaaaattacaatcaatactactttgtgattttatttt
acacccataagagtggcaaagattaaaaaaaaaaaaaaaaccatggtagc
ttattgctagtgatcatgtagactaagaagaacacccatccttttttggt
agtggtgcaaacttgtatggccagtatggaaattagtgtaactgttcctc
agtaagttgtaaatcaatctacctccacattcaactgtagcactcttggg
catatacccaaaggatgattcatcctaccaaagagacacttgctcaacca
tatttattactgctctatttataatacccagaaattagaaacaaaatata
ttccatcaccatgtagagactgccatatccagggatccaccccataatca
gcttccaaatgctgacaccattgcatacactagcaagatttttactgaaa
ggacccagatgtagctgtctccttggtgaagactatgcccgggcctatgc
aaacacagaaagtgggatgcctccacagatcagcttaatggatggattca
cagggcctcccaatggaggagctagaagaaggtaccccaagggacttaag
ggactcttcacccctataggtgggaaacacatttatgaaactaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_53913824_53914977
seq2: B6Ng01-181E13.b_54_1203

seq1  TGGATGGCTATCCAGAGTAGGATCTCGAGGCAGGCTACTTACCTCTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGCTATCCAGAGTAGGATCTCGAGGCAGGCTACTTACCTCTTCCT  50

seq1  GAGCATGGTCCCTCTGCTATCAGAGCTGAGTTGGGTACTTAGACTCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGGTCCCTCTGCTATCAGAGCTGAGTTGGGTACTTAGACTCACCT  100

seq1  ACTCACATGTACATGCTCTCTGTCTCTTTGTCTGTTTGTCTGCCTATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACATGTACATGCTCTCTGTCTCTTTGTCTGTTTGTCTGCCTATCTG  150

seq1  TCTGTCTGTCCATCCATCCACCTGTCTGTCCGTCTGTCCATCCTCTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTCCATCCATCCACCTGTCTGTCCGTCTGTCCATCCTCTGTCT  200

seq1  GTCTGACTCTCTGGAAACACGGCTTCACAATGTATCTTAGCCTCCCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACTCTCTGGAAACACGGCTTCACAATGTATCTTAGCCTCCCTTTG  250

seq1  AATCCACTTTATAACCTAGGTTGGCTTCAAACTCACAGAAATCCTCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACTTTATAACCTAGGTTGGCTTCAAACTCACAGAAATCCTCCTGC  300

seq1  TTCAACCTCCTAAGTGCTGGGCTTATAGGCCTGTGCCATCAGGCCACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCTCCTAAGTGCTGGGCTTATAGGCCTGTGCCATCAGGCCACATC  350

seq1  CTTTGAAAGGATGTCTGCTCTATTCAGGTCTGGCGGTTCCAACCCTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAGGATGTCTGCTCTATTCAGGTCTGGCGGTTCCAACCCTTCTG  400

seq1  TGGTATTTCCAGTTGTCTTTCCCTGTGTGTCTGAGCAACTGGGTCTATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTTCCAGTTGTCTTTCCCTGTGTGTCTGAGCAACTGGGTCTATAG  450

seq1  TATGGTGGACATGGTAGAAGAATCCAGATTCTGGACACCAGTATGAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGGACATGGTAGAAGAATCCAGATTCTGGACACCAGTATGAAGAA  500

seq1  CTTTGCAGACCTGCGTCGTGCTGTGACATCAGACAGGATCATGTCACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAGACCTGCGTCGTGCTGTGACATCAGACAGGATCATGTCACTAA  550

seq1  GGTTATTGAGTTGTTACTATGGTCAGTCATCCCTATAGACTGGCGATCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTGAGTTGTTACTATGGTCAGTCATCCCTATAGACTGGCGATCCG  600

seq1  GTGGTGATGTCCTTTGCCCAGCTCACGTTTGCTGTTCCTATAGCTGGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGATGTCCTTTGCCCAGCTCACGTTTGCTGTTCCTATAGCTGGGAC  650

seq1  GGGGCCTGGGTTTAAGTAGGTAGATTAGGTCACATGGAGTCACGAGCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTGGGTTTAAGTAGGTAGATTAGGTCACATGGAGTCACGAGCACT  700

seq1  GGCTGTTAGAGTGGGGCTGGTGACCTCTGCTCTTGGAGGAAGTGACATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTAGAGTGGGGCTGGTGACCTCTGCTCTTGGAGGAAGTGACATTA  750

seq1  AAGCACAGGTTAGGAACCACATGGTCTTAAACCATCAATTTTATTAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGGTTAGGAACCACATGGTCTTAAACCATCAATTTTATTAGCTG  800

seq1  TGCAT-AAGGCTAGACCTTGGAGACACCCAGCCATCCCATCTGTAAAAGA  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAAGGCTAGACCTTGGAGACACCCAGCCATCCCATCTGTAAAAGA  850

seq1  GGCTTAGAACCTCCTGTTTGTTGAAGATTAAATGAGATTTTTGACACAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGAACCTCCTGTTTGTTGAAGATTAAATGAGATTTTTGACACAGC  900

seq1  TTGGTTCTTACCTGTGACTGTTCCCAACTGTTTTCATAGATTATTTTGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTTACCTGTGACTGTTCCCAACTGTTTTCATAGATTATTTTGTG  950

seq1  CAAACAGGAAAACACAATTTTATTAAGTTTTTGGCCTTTCTTATGGGCAG  999
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  CAAACAGGAAAACAC-ATTTTATTAAGTTTTTGGCCTTTCCTATGGGCAG  999

seq1  AAAATTTGGTGATTGCAGGGGTTTCTCAGGGGCAGGGAGACTAGA-CATT  1048
      |||  || |||| |||||||||||||||  ||||||||||||||| ||||
seq2  AAA--TTTGTGA-TGCAGGGGTTTCTCA--GGCAGGGAGACTAGACCATT  1044

seq1  AGTCAGACCTCAGGGGCCAC-TCT-GTTCCCCAGCCTGTTCTCTGGGCCA  1096
      |||||||||||||||  ||| ||| ||||| |||||||||||||||||  
seq2  AGTCAGACCTCAGGG--CACTTCTGGTTCCTCAGCCTGTTCTCTGGGCAC  1092

seq1  TTCTTCCTTTGTCACTTGCCACCTAGAT-CAGTTCATGCCTTTCCTCTGT  1145
       |||||| | ||   ||||||| ||||| ||||||||||| || ||||||
seq2  ATCTTCCATAGTACATTGCCACTTAGATACAGTTCATGCC-TTGCTCTGT  1141

seq1  GGGAAGTCC  1154
      ||| |||||
seq2  GGGGAGTCC  1150