BAC Information

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BAC

Clone NameB6Ng01-181F05
Chromosome4 (Build37)
Map Location 70,518,381 - 70,716,497
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039888, LOC242497, LOC671064, Cdk5rap2, Megf9
Downstream geneLOC100039565, LOC100039979, LOC667638, EG667649
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181F05.bB6Ng01-181F05.g
ACCGA007516GA007517
length1,1741,096
definitionB6Ng01-181F05.b B6Ng01-181F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,518,381 - 70,519,460)(70,715,413 - 70,716,497)
sequence
gaattctcaatagaggaatctctaatggctgagagacatttatagaaatg
ctcaacgtccttagccatcaaagaaatgcaaatcaaagcaactctgagat
tctgacacacccatcagaactgctggccaccttgacactctctcttttga
gattcttgttcttcacctttaatgaacagttttgtatgagtggcaaatgg
aacaaggtgtcatcctgacgaattatatagaggttagcacagagaaggcc
ttacaactacttccttaggtttttggaccactattcttggagacattcat
gttcctggcagctgctgaaggagccgcacatagagactgtaagaataaaa
gctgtgctctccaagtccacagctggctccagtataacactgcctagcat
aaaccacattggaagtggaacctccagcttcattcaggctttctttttgt
aaatgcagccctagtccgtgtcaaagcatagcttcttactagattctgac
acaaaaccagcagctaggttactactaactgactcatagaactcagcaat
gatcaatggctgacatttcaagccactgcatttttgtgattatttctaac
agccaccagtaaggaagatattgatcccccgaggaaaataccagtcatct
gtataattcatatatattttacattttcccttcaaaattcttaagtgatg
aggttcaaaatataagttcttacctactccaatgctcatccatgtaaaat
tattttttgttctcctcatataattgtcaccttggcggttcactgcctcc
atctcctaatataagcctagccctggaagcttctaacctttgtgcaatgt
tatgtaggcctagaatgttttcagcttctgagacttgctgctgagtaggc
tcaccctttctagttttttttttttttttttcctgagctctggatggctg
cctcactcagttgttctggttcaaactcctcttcaatctgactgattaaa
tcaggcttccctgttcttggactcactgaattgctctcatactaactgaa
ttgggcttatactaacttggcaatatgttcttatcttctggcctcctctc
ttctctgcttcttctgtcctgaccttatgtctagcttgttcttttctcac
ctgttctctgtaactggccagtaa

gaattcttgagaaacgttcactaatgggtgtgaaacacttaaagaaatgt
tcaacatccttaatcatcaggaaaatgcaaatcaaagcaactctgagatt
tcattttatgcctgccagaatggctaagatcaaaactcaagcaacaacac
atgctagcaagggaaacacaccctcatcggtggtgggagtgaaaactttt
actttgaaatcaatttgtgtaacaggaatgtcagggttgcctttatacat
tggggaccatgcagctgcagaagcacctcctgcacgaggacctggttgag
gactgtctgagaaagcaaggattgctagagtaaataacgcccgccaatca
ggtacttctgtttagaatagatattttcttaggaccaatggatttagaga
gtatcaactgaacttgcagcagtgctcagatgagcttgctgcagcatttc
tcacctgctcccctactctctgccgttgactctgcaccaacttgtcccca
acccccaagaccaggtagggtcaggcagagagctgtccagggcacaggct
atatctggcacccaacgtggttgatggactacttcattgtccttgttttg
tggctgcttgtgaacttccttttctgggagctagtttttgcctgatactg
caaggattgtgcttgtggtttggcctgatctactcttcttcttgtggtac
tactgctgtgccccctttggtagcttctttggtgagttggccccttagtg
ttttatgttgtgggccccacgaaggtgagctcgtggacctcatttctgtc
ttctttgtcttttctgtctatccatctggtaatctcgtttttgccttggt
ttggtttgagggtgagcattgcagtgagcatgaggcaagcatgcagtgaa
tgtgatgcaagcatgagttaagtgttgcagtgagcttggtgccagttgat
tgttgaccttgcagtaatctttttttatttttctttgtctttaagtgagc
ggtgctgcggatgatcatgccgttggaaatctttcttgtcttctttgttc
tttcctattcattttcactttccggtcttggaattcatcctggtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_70518381_70519460
seq2: B6Ng01-181F05.b_144_1219

seq1  ATTCTGACACACCCATCAGAACTGCTGGCCACCTTGACACTCTCTCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGACACACCCATCAGAACTGCTGGCCACCTTGACACTCTCTCTTTT  50

seq1  GAGATTCTTGTTCTTCACCTTTAATGAACAGTTTTGTATGAGTGGCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTTGTTCTTCACCTTTAATGAACAGTTTTGTATGAGTGGCAAAT  100

seq1  GGAACAAGGTGTCATCCTGACGAATTATATAGAGGTTAGCACAGAGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAGGTGTCATCCTGACGAATTATATAGAGGTTAGCACAGAGAAGG  150

seq1  CCTTACAACTACTTCCTTAGGTTTTTGGACCACTATTCTTGGAGACATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAACTACTTCCTTAGGTTTTTGGACCACTATTCTTGGAGACATTC  200

seq1  ATGTTCCTGGCAGCTGCTGAAGGAGCCGCACATAGAGACTGTAAGAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCTGGCAGCTGCTGAAGGAGCCGCACATAGAGACTGTAAGAATAA  250

seq1  AAGCTGTGCTCTCCAAGTCCACAGCTGGCTCCAGTATAACACTGCCTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTGCTCTCCAAGTCCACAGCTGGCTCCAGTATAACACTGCCTAGC  300

seq1  ATAAACCACATTGGAAGTGGAACCTCCAGCTTCATTCAGGCTTTCTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCACATTGGAAGTGGAACCTCCAGCTTCATTCAGGCTTTCTTTTT  350

seq1  GTAAATGCAGCCCTAGTCCGTGTCAAAGCATAGCTTCTTACTAGATTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGCAGCCCTAGTCCGTGTCAAAGCATAGCTTCTTACTAGATTCTG  400

seq1  ACACAAAACCAGCAGCTAGGTTACTACTAACTGACTCATAGAACTCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAACCAGCAGCTAGGTTACTACTAACTGACTCATAGAACTCAGCA  450

seq1  ATGATCAATGGCTGACATTTCAAGCCACTGCATTTTTGTGATTATTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCAATGGCTGACATTTCAAGCCACTGCATTTTTGTGATTATTTCTA  500

seq1  ACAGCCACCAGTAAGGAAGATATTGATCCCCCGAGGAAAATACCAGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCACCAGTAAGGAAGATATTGATCCCCCGAGGAAAATACCAGTCAT  550

seq1  CTGTATAATTCATATATATTTTACATTTTCCCTTCAAAATTCTTAAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAATTCATATATATTTTACATTTTCCCTTCAAAATTCTTAAGTGA  600

seq1  TGAGGTTCAAAATATAAGTTCTTACCTACTCCAATGCTCATCCATGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTCAAAATATAAGTTCTTACCTACTCCAATGCTCATCCATGTAAA  650

seq1  ATTATTTTTTGTTCTCCTCATATAATTGTCACCTTGGCGGTTCACTGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTTGTTCTCCTCATATAATTGTCACCTTGGCGGTTCACTGCCT  700

seq1  CCATCTCCTAATATAAGCCTAGCCCTGGAAGCTTCTAACCTTTGTGCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCTAATATAAGCCTAGCCCTGGAAGCTTCTAACCTTTGTGCAAT  750

seq1  GTTATGTAGGCCTAGAATGTTTTCAGCTTCTGAGACTTGCTGCTGAGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTAGGCCTAGAATGTTTTCAGCTTCTGAGACTTGCTGCTGAGTAG  800

seq1  GCTCACCCTTTCTAG-TTTTTTTTTTTTTTTTTCCTGAGCTCTGGATGGC  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTCACCCTTTCTAGTTTTTTTTTTTTTTTTTTCCTGAGCTCTGGATGGC  850

seq1  TGCCTCACTCAGTTGTTCTGGTTCAAACTCCTCTTCAATCTGACTGATTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCACTCAGTTGTTCTGGTTCAAACTCCTCTTCAATCTGACTGATTA  900

seq1  AATCAGGCTTCCCTG-TCTTGGACTCACCTGAATTGCTCTCATACTAACT  948
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  AATCAGGCTTCCCTGTTCTTGGACTCA-CTGAATTGCTCTCATACTAACT  949

seq1  GAATTGGCCTCATACTAACTTTGGCAATATGTTCTTATCTTCTGGCTCCT  998
      ||||||| || |||||||| ||||||||||||||||||||||||||  | 
seq2  GAATTGGGCTTATACTAAC-TTGGCAATATGTTCTTATCTTCTGGCCTCC  998

seq1  TCTCCTTCTCTGGCTCCTTCTGTCTTGACC-TATGTCTAGCTTGTTCTTT  1047
      ||| ||||||| ||| |||||||| ||||| |||||||||||||||||||
seq2  TCT-CTTCTCT-GCTTCTTCTGTCCTGACCTTATGTCTAGCTTGTTCTTT  1046

seq1  CTTCAACCTG-TCTCTGTAAAACTGCCCCAGTAA  1080
        || ||||| |||||||  |||||  |||||||
seq2  TCTC-ACCTGTTCTCTGT--AACTG-GCCAGTAA  1076


seq1: chr4_70715413_70716497
seq2: B6Ng01-181F05.g_66_1161 (reverse)

seq1  GTACCAGGATGAAT--CCAGACC-GAAAGTGAAAATGAAT-GGAAAAGAC  46
      ||||||||||||||  | ||||| |||||||||||||||| |||||  ||
seq2  GTACCAGGATGAATTCCAAGACCGGAAAGTGAAAATGAATAGGAAAGAAC  50

seq1  AAAGAAGACAGAAAAGATTTCC-ACGGCATGATTAT-CGCAGCA-CGCTC  93
      ||||||||||  |||||||||| |||||||||| || ||||||| |||||
seq2  AAAGAAGACAAGAAAGATTTCCAACGGCATGATCATCCGCAGCACCGCTC  100

seq1  ACTTAAAGACAAAGAAAAAT-AAAAAAGATTACTGCAAGGTCAACAATC-  141
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  ACTTAAAGACAAAGAAAAATAAAAAAAGATTACTGCAAGGTCAACAATCA  150

seq1  ACTGGCCACAAGCTCACTGC-ACACTTACCTCATGCTTGCATCACATTCA  190
      ||||||  |||||||||||| ||||||| |||||||||||||||||||||
seq2  ACTGGCACCAAGCTCACTGCAACACTTAACTCATGCTTGCATCACATTCA  200

seq1  CTGCATGCTTGCCTCATGCTCACTGC-ATGCTCACCCTCAAACCAAACCA  239
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGCATGCTTGCCTCATGCTCACTGCAATGCTCACCCTCAAACCAAACCA  250

seq1  AGGCAAAAACGAGATTACCAGATGGATAGACAGAAAAGACAAAGAAGACA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAAACGAGATTACCAGATGGATAGACAGAAAAGACAAAGAAGACA  300

seq1  GAAATGAGGTCCACGAGCTCACCTTCGTGGGGCCCACAACATAAAACACT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGGTCCACGAGCTCACCTTCGTGGGGCCCACAACATAAAACACT  350

seq1  AAGGGGCCAACTCACCAAAGAAGCTACCAAAGGGGGCACAGCAGTAGTAC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCCAACTCACCAAAGAAGCTACCAAAGGGGGCACAGCAGTAGTAC  400

seq1  CACAAGAAGAAGAGTAGATCAGGCCAAACCACAAGCACAATCCTTGCAGT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAGAAGAGTAGATCAGGCCAAACCACAAGCACAATCCTTGCAGT  450

seq1  ATCAGGCAAAAACTAGCTCCCAGAAAAGGAAGTTCACAAGCAGCCACAAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCAAAAACTAGCTCCCAGAAAAGGAAGTTCACAAGCAGCCACAAA  500

seq1  ACAAGGACAATGAAGTAGTCCATCAACCACGTTGGGTGCCAGATATAGCC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGACAATGAAGTAGTCCATCAACCACGTTGGGTGCCAGATATAGCC  550

seq1  TGTGCCCTGGACAGCTCTCTGCCTGACCCTACCTGGTCTTGGGGGTTGGG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTGGACAGCTCTCTGCCTGACCCTACCTGGTCTTGGGGGTTGGG  600

seq1  GACAAGTTGGTGCAGAGTCAACGGCAGAGAGTAGGGGAGCAGGTGAGAAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTTGGTGCAGAGTCAACGGCAGAGAGTAGGGGAGCAGGTGAGAAA  650

seq1  TGCTGCAGCAAGCTCATCTGAGCACTGCTGCAAGTTCAGTTGATACTCTC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAGCAAGCTCATCTGAGCACTGCTGCAAGTTCAGTTGATACTCTC  700

seq1  TAAATCCATTGGTCCTAAGAAAATATCTATTCTAAACAGAAGTACCTGAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCATTGGTCCTAAGAAAATATCTATTCTAAACAGAAGTACCTGAT  750

seq1  TGGCGGGCGTTATTTACTCTAGCAATCCTTGCTTTCTCAGACAGTCCTCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGGCGTTATTTACTCTAGCAATCCTTGCTTTCTCAGACAGTCCTCA  800

seq1  ACCAGGTCCTCGTGCAGGAGGTGCTTCTGCAGCTGCATGGTCCCCAATGT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTCCTCGTGCAGGAGGTGCTTCTGCAGCTGCATGGTCCCCAATGT  850

seq1  ATAAAGGCAACCCTGACATTCCTGTTACACAAATTGATTTCAAAGTAAAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGCAACCCTGACATTCCTGTTACACAAATTGATTTCAAAGTAAAA  900

seq1  GTTTTCACTCCCACCACCGATGAGGGTGTGTTTCCCTTGCTAGCATGTGT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCACTCCCACCACCGATGAGGGTGTGTTTCCCTTGCTAGCATGTGT  950

seq1  TGTTGCTTGAGTTTTGATCTTAGCCATTCTGGCAGGCATAAAATGAAATC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTTGAGTTTTGATCTTAGCCATTCTGGCAGGCATAAAATGAAATC  1000

seq1  TCAGAGTTGCTTTGATTTGCATTTTCCTGATGATTAAGGATGTTGAACAT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTGCTTTGATTTGCATTTTCCTGATGATTAAGGATGTTGAACAT  1050

seq1  TTCTTTAAGTGTTTCACACCCATTAGTGAACGTTTCTCAAGAATTC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAGTGTTTCACACCCATTAGTGAACGTTTCTCAAGAATTC  1096


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