BAC Information

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BAC

Clone NameB6Ng01-181F12
Chromosome4 (Build37)
Map Location 107,077,864 - 107,261,167
singlet/doubletdoublet
Overlap geneTmem48, Glis1
Upstream geneUsp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920
Downstream geneDmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181F12.bB6Ng01-181F12.g
ACCGA007528GA007529
length8801,126
definitionB6Ng01-181F12.b B6Ng01-181F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,077,864 - 107,078,733)(107,260,048 - 107,261,167)
sequence
gaattccctgtcctttgttatgcatggatgttaataaggattagagatgg
tgagaataattagttcatttctttaaccctgatgcatttcttttttgagc
agttttaactgaagattgttttggactggagtaaatgtgtgcctgctgta
aaagctttggctcctgaatttggatctttagggcccaggagaaaagcccg
gcatggctcatatggctgtaacctcatccttgctggagagaggataagat
agtaagatggaaagccactgagggaagcaagatgggaaaactccaagttt
tcacaagtgtgcacattcatacactcatgtgtacatgccccatacacaca
agagattggtgcttttgtggttttattccttttttttttttttttttttt
ttttggttttccgagacagggttgtggttttattcttaatttggagcctt
tcaaaaaacaatttacttacaaaacttcaataaagtcagtctcttgcagt
tatacattagatggagtgactccttttaaaatccaaggacagtggcccca
gtggtggattagacctttactgccagtgctcaggaggtagagcaaggtgg
acctctggcttagaggccagcctggtctacagagtgagttccaggacaac
cagggctacagagaaaccctgtctcaaaaaaaaccaaacaaataaaaaca
aaaatttcaagggcaggtgtattgtgagggcacagtgattttgacatttt
ctagtcgtttgaacaatttgtttgctatcctaagaaatatttccctatta
ataataaatttcccccatttcgggtaagaatggttaaaaattaatatttt
gtacattttcccagaaactatgtaagaagt
gaattccaaccagagggctagacgccaggctgagagggcacgcctctagt
cagagcctcaggagggaagatggtgtggaagaaaagctgagggccacaga
gagtgtgtaccaaccagagctgcgaacgtacagagacttgagaggaccaa
aatgttgaagcacataagagcaaaggccagaaaggctgcacagtacaacc
tcgagaccatgctcatcgccaagacagaagccaggtttaagggaataatg
tagtcagagtactgagaaaaagaactgccaatcaagcaaaggtaccagga
agctggaaaccgatcccggaaggaaggtgtgagctgcgtaagatgtgggg
gtgtgcagctgaatctacacttgctgggcagagctcggcgcctctgccat
gaaacaacagcgctcggaacatgtggcagttgcaaaggccagggtcagag
cccttcagcccccgcaatagctggcacacagggacggtagggaccgggtg
gccagcagtggcctgaagcttgcatgcagctacagacacaggcagagcgc
tcactcactgtctgctcttttaggtcaagaatgtctgataaaatctgaag
ctaatcaccaacaaaagaacttgagtatataacttccaagactccaggcg
ggaggcggggcgaatagttgttcttaattcagaaaaataaaccaattaac
agaaactcagggaaaaaaatgggggcaccgaaaaagcagaaggcaaaaat
gtaagtctgttcttctagagatcctgagttcaattcccagcaaccacata
caggtagctcacaataatttgtaacatgatctggtgccttcttctggtgt
gtcagaagagagtgacagggtactcatatacaaaaataaatctttaaaaa
caaaaaacaaaaaacaggggctggtggaggtggctcagcgggtaagagca
ctgacttgttctttccggaaggtcttggagttccaatccagcaaccacca
ccggtggctccacacacccggtaatgagaatcttggacgcctcttcttgc
gcgtcttgaagacagcttacagtgtaccttatatttataatagtaaaagc
ttaaaataaatcagaaacatgtgacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_107077864_107078733
seq2: B6Ng01-181F12.b_44_923

seq1  GAATTCCCTGTCCTTTGTTATGCATGGATGTTAATAAGGATTAGAGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTCCTTTGTTATGCATGGATGTTAATAAGGATTAGAGATGG  50

seq1  TGAGAATAATTAGTTCATTTCTTTAACCCTGATGCATTTCTTTTTTGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATAATTAGTTCATTTCTTTAACCCTGATGCATTTCTTTTTTGAGC  100

seq1  AGTTTTAACTGAAGATTGTTTTGGACTGGAGTAAATGTGTGCCTGCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAACTGAAGATTGTTTTGGACTGGAGTAAATGTGTGCCTGCTGTA  150

seq1  AAAGCTTTGGCTCCTGAATTTGGATCTTTAGGGCCCAGGAGAAAAGCCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTGGCTCCTGAATTTGGATCTTTAGGGCCCAGGAGAAAAGCCCG  200

seq1  GCATGGCTCATATGGCTGTAACCTCATCCTTGCTGGAGAGAGGATAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCTCATATGGCTGTAACCTCATCCTTGCTGGAGAGAGGATAAGAT  250

seq1  AGTAAGATGGAAAGCCACTGAGGGAAGCAAGATGGGAAAACTCCAAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGATGGAAAGCCACTGAGGGAAGCAAGATGGGAAAACTCCAAGTTT  300

seq1  TCACAAGTGTGCACATTCATACACTCATGTGTACATGCCCCATACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGTGTGCACATTCATACACTCATGTGTACATGCCCCATACACACA  350

seq1  AGAGATTGGTGCTTTTGTGGTTTTATTCCTTTTTTTTTTTTTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTGGTGCTTTTGTGGTTTTATTCCTTTTTTTTTTTTTTTTTTTTT  400

seq1  TTTTGGTTTTCCGAGACAGGGTTGTGGTTTTATTCTTAATTTGGAGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTTTCCGAGACAGGGTTGTGGTTTTATTCTTAATTTGGAGCCTT  450

seq1  TCAAAAAACAATTTACTTACAAAACTTCAATAAAGTCAGTCTCTTGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAACAATTTACTTACAAAACTTCAATAAAGTCAGTCTCTTGCAGT  500

seq1  TATACATTAGATGGAGTGACTCCTTTTAAAATCCAAGGACAGTGGCCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTAGATGGAGTGACTCCTTTTAAAATCCAAGGACAGTGGCCCCA  550

seq1  GTGGTGGATTAGACCTTTACTGCCAGTGCTCAGGAGGTAGAGCAAGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGATTAGACCTTTACTGCCAGTGCTCAGGAGGTAGAGCAAGGTGG  600

seq1  ACCTCTGGCTTAGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGGCTTAGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAAC  650

seq1  CAGGGCTACAGAGAAACCCTGTCTCAAAAAAAACCAAACAAATAAAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTACAGAGAAACCCTGTCTCAAAAAAAACCAAACAAATAAAAACA  700

seq1  AAAA-TTCAAGGGCAGGTGTATTGTGAGGGCACAGTGA-TTTGACA-TTT  747
      |||| ||||||||||||||||||||||||||||||||| ||||||| |||
seq2  AAAATTTCAAGGGCAGGTGTATTGTGAGGGCACAGTGATTTTGACATTTT  750

seq1  CTAGTCGTTTGAACAATTTG-TTGCTATCCTAAGAAATATTTCCCTATTA  796
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTAGTCGTTTGAACAATTTGTTTGCTATCCTAAGAAATATTTCCCTATTA  800

seq1  ATAAT-AATTTCCCCCATTTCGGGTAAGAAT-GTTAAAA--TTATA-TTT  841
      ||||| ||||||||||||||||||||||||| |||||||  | ||| |||
seq2  ATAATAAATTTCCCCCATTTCGGGTAAGAATGGTTAAAAATTAATATTTT  850

seq1  GTACA-TTTCCAAGAAACTATGTAAGAAGT  870
      ||||| ||||| ||||||||||||||||||
seq2  GTACATTTTCCCAGAAACTATGTAAGAAGT  880

seq1: chr4_107260048_107261167
seq2: B6Ng01-181F12.g_67_1192 (reverse)

seq1  GGTC-CATGTTTCTGATTTTTTTTTAAGATTTTATTTATTTATTATATAT  49
      |||| ||||||||||| ||| ||||||| |||||  ||||   || ||||
seq2  GGTCACATGTTTCTGA-TTTATTTTAAGCTTTTA-CTATT--ATAAATAT  46

seq1  AA-GTACACTGT-AGCTGTCTTC-AGACGCGCCAGAAGAGGGCGTC--AG  94
      || ||||||||| |||||||||| |||||||| |||||| ||||||  ||
seq2  AAGGTACACTGTAAGCTGTCTTCAAGACGCGCAAGAAGA-GGCGTCCAAG  95

seq1  A-TCTCATTA-CGGGTGGTTGTGAGCCACCG--TGTGGTTGCTGGGATTT  140
      | |||||||| ||||||  || |||||||||   ||||||||| ||||| 
seq2  ATTCTCATTACCGGGTGTGTG-GAGCCACCGGTGGTGGTTGCT-GGATTG  143

seq1  GAACT-CAGGACCTTC--GGAAGAAC-AGTCAGTGCTCTTACCCGCTGAG  186
      ||||| || |||||||  | |||||| |||||||||||||||||||||||
seq2  GAACTCCAAGACCTTCCGGAAAGAACAAGTCAGTGCTCTTACCCGCTGAG  193

seq1  CCACCT-CACCAGCCCCTGTTTTTTTGTTTTTTGTTTTTTAAAGATTTAT  235
      |||||| |||||||||||| |||||||||||||| |||||||||||||||
seq2  CCACCTCCACCAGCCCCTG-TTTTTTGTTTTTTG-TTTTTAAAGATTTAT  241

seq1  TTTTGTATATGAGTACCCTGTCACTCTCTTCTGACACACCAGAAGAAGGC  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATATGAGTACCCTGTCACTCTCTTCTGACACACCAGAAGAAGGC  291

seq1  ACCAGATCATGTTACAAATTATTGTGAGCTACCTGTATGTGGTTGCTGGG  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATCATGTTACAAATTATTGTGAGCTACCTGTATGTGGTTGCTGGG  341

seq1  AATTGAACTCAGGATCTCTAGAAGAACAGACTTACATTTTTGCCTTCTGC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACTCAGGATCTCTAGAAGAACAGACTTACATTTTTGCCTTCTGC  391

seq1  TTTTTCGGTGCCCCCATTTTTTTCCCTGAGTTTCTGTTAATTGGTTTATT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCGGTGCCCCCATTTTTTTCCCTGAGTTTCTGTTAATTGGTTTATT  441

seq1  TTTCTGAATTAAGAACAACTATTCGCCCCGCCTCCCGCCTGGAGTCTTGG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAATTAAGAACAACTATTCGCCCCGCCTCCCGCCTGGAGTCTTGG  491

seq1  AAGTTATATACTCAAGTTCTTTTGTTGGTGATTAGCTTCAGATTTTATCA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATATACTCAAGTTCTTTTGTTGGTGATTAGCTTCAGATTTTATCA  541

seq1  GACATTCTTGACCTAAAAGAGCAGACAGTGAGTGAGCGCTCTGCCTGTGT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTTGACCTAAAAGAGCAGACAGTGAGTGAGCGCTCTGCCTGTGT  591

seq1  CTGTAGCTGCATGCAAGCTTCAGGCCACTGCTGGCCACCCGGTCCCTACC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCTGCATGCAAGCTTCAGGCCACTGCTGGCCACCCGGTCCCTACC  641

seq1  GTCCCTGTGTGCCAGCTATTGCGGGGGCTGAAGGGCTCTGACCCTGGCCT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTGTGCCAGCTATTGCGGGGGCTGAAGGGCTCTGACCCTGGCCT  691

seq1  TTGCAACTGCCACATGTTCCGAGCGCTGTTGTTTCATGGCAGAGGCGCCG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACTGCCACATGTTCCGAGCGCTGTTGTTTCATGGCAGAGGCGCCG  741

seq1  AGCTCTGCCCAGCAAGTGTAGATTCAGCTGCACACCCCCACATCTTACGC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGCCCAGCAAGTGTAGATTCAGCTGCACACCCCCACATCTTACGC  791

seq1  AGCTCACACCTTCCTTCCGGGATCGGTTTCCAGCTTCCTGGTACCTTTGC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACACCTTCCTTCCGGGATCGGTTTCCAGCTTCCTGGTACCTTTGC  841

seq1  TTGATTGGCAGTTCTTTTTCTCAGTACTCTGACTACATTATTCCCTTAAA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGGCAGTTCTTTTTCTCAGTACTCTGACTACATTATTCCCTTAAA  891

seq1  CCTGGCTTCTGTCTTGGCGATGAGCATGGTCTCGAGGTTGTACTGTGCAG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTCTGTCTTGGCGATGAGCATGGTCTCGAGGTTGTACTGTGCAG  941

seq1  CCTTTCTGGCCTTTGCTCTTATGTGCTTCAACATTTTGGTCCTCTCAAGT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGGCCTTTGCTCTTATGTGCTTCAACATTTTGGTCCTCTCAAGT  991

seq1  CTCTGTACGTTCGCAGCTCTGGTTGGTACACACTCTCTGTGGCCCTCAGC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTACGTTCGCAGCTCTGGTTGGTACACACTCTCTGTGGCCCTCAGC  1041

seq1  TTTTCTTCCACACCATCTTCCCTCCTGAGGCTCTGACTAGAGGCGTGCCC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCACACCATCTTCCCTCCTGAGGCTCTGACTAGAGGCGTGCCC  1091

seq1  TCTCAGCCTGGCGTCTAGCCCTCTGGTTGGAATTC  1120
      |||||||||||||||||||||||||||||||||||
seq2  TCTCAGCCTGGCGTCTAGCCCTCTGGTTGGAATTC  1126