BAC Information

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BAC

Clone NameB6Ng01-181N21
Chromosome4 (Build37)
Map Location 38,889,560 - 38,890,682
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC277771, LOC100039448, LOC665520
Downstream geneLOC100039487, 1700009N14Rik, LOC435775, LOC329824, LOC621880
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181N21.bB6Ng01-181N21.g
ACCGA007912GA007913
length1,1211,014
definitionB6Ng01-181N21.b B6Ng01-181N21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcttccacagagctgagggaaatgtcgggatcaaataaatttgc
agacaataaaaacaagaggacgtctatgatgcaagacaattataaaaagt
accatttccagagaagcagaaagaggtaggacaagttgtatttgtgaagg
ggatcagatagcacaggatatcatgagtgagcacaatgtctagagcaggg
tttcccacacctgatctcaggtcaaataaactggagtgctttcaaaagct
gccaaatgtctgaatcagactcagaactaattaaaccacaacttctgcat
gtgcctcttattgttttttaataataattttgcaatggaattctagtgca
cacccagtgttgagacaacaaatgaaaaaaatcacagatattcatgaata
tttgcttgcaacaaatgatactatttcagtctacgagctatctgaacatg
cagttagttacaaatcaagacaactagagcagtttttaaaagttaggcaa
agtgctgacttccagtttcttttatgacttatgtattcatttattattca
tgtatatctgaggatggttgccatgtatgtgagttcatgaagagggcaaa
agttgtccgatcccccggggctggagttacaggaggctgtaagctgctgc
tgtgggtgccaggagccaaaatccagccccctagaaaagcagcaaatagt
cttaaatgctaatccacctctccagcacactagcttcaacattaacgttc
ttaagcaactcacccaatttattttatacgtgtgtagaatatatacacat
ttgagaatcagaaacacaaacaaaaaacttaaacaaagccacaacttacc
atgctttaagtcttaccattgagtctaatcagttctaaattcactgtaca
tttaaaactttttttcttttgactattatactactaataattatataagt
atatgcatatatgcatatatgtgtatgtttgtgtctttgtaagtatgtac
atgtgtgtggaaattcttgtagagtcagaaaaggaatccacatccctgct
gctgaatacaagtgattatgaacctgtgtggtgtgatgcaagctcacaaa
atcctgcaagaatattatata

gaattctcaccttaggaatacagaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccttgagat
ttcatctcacaccagtcagcattgctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaggaggacactcctccattattggtgg
gattgcaagctggtacaaccactctggaaatcagtctggtggttcctcag
gaaattggacatagtaataccggaggatcctgcaatacctctcctgggca
tatatccagaagatgtcccaactggcaggaaggacacatgctccactatg
ttcatagcagccttatttataacagccagaaactggaaagaatccagatg
ctcctcaacagaatggatgcaaaaaatgtggtacatttacacaatggagt
actactcagctattaaaaggaatgaatttatgaaattcctaggcaaatgg
ttggacctggagggcatcatcctgagtgaggtaacacaatcacaaaagaa
ctcaaatgatatgtactcactgataagtggatattaggccagaaacttag
tatacctgagatataagatacaatttgcaaaacacataaaactgaagaag
aaccaagaccgaagtgtggacactttgccccttcttagaattggaaaaca
atcacccatggaaggagttacagagacaatgttttggagctgagacaaaa
gaatggaccatgtagagactgccatatccaggggatccatcccataatca
gccttccaaacgctgacacccattgccatacactaagcaagattttgctg
aaagggaccctgatatagctgtctcttggtgagactaggccggggcctag
caaacacattagtgaatgcttcacaagtcagctattggatggatcaccgg
gggctcccagttggagggagctagagaaagtatcccaaggactctaagga
agattcgtgcatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_38889560_38890682
seq2: B6Ng01-181N21.b_46_1166

seq1  GAATTCTCTTCCACAGAGCTGAGGGAAATGTCGGGATCAAATAAATTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCACAGAGCTGAGGGAAATGTCGGGATCAAATAAATTTGC  50

seq1  AGACAATAAAAACAAGAGGACGTCTATGATGCAAGACAATTATAAAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATAAAAACAAGAGGACGTCTATGATGCAAGACAATTATAAAAAGT  100

seq1  ACCATTTCCAGAGAAGCAGAAAGAGGTAGGACAAGTTGTATTTGTGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCCAGAGAAGCAGAAAGAGGTAGGACAAGTTGTATTTGTGAAGG  150

seq1  GGATCAGATAGCACAGGATATCATGAGTGAGCACAATGTCTAGAGCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGATAGCACAGGATATCATGAGTGAGCACAATGTCTAGAGCAGGG  200

seq1  TTTCCCACACCTGATCTCAGGTCAAATAAACTGGAGTGCTTTCAAAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACACCTGATCTCAGGTCAAATAAACTGGAGTGCTTTCAAAAGCT  250

seq1  GCCAAATGTCTGAATCAGACTCAGAACTAATTAAACCACAACTTCTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATGTCTGAATCAGACTCAGAACTAATTAAACCACAACTTCTGCAT  300

seq1  GTGCCTCTTATTGTTTTTTAATAATAATTTTGCAATGGAATTCTAGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCTTATTGTTTTTTAATAATAATTTTGCAATGGAATTCTAGTGCA  350

seq1  CACCCAGTGTTGAGACAACAAATGAAAAAAATCACAGATATTCATGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGTGTTGAGACAACAAATGAAAAAAATCACAGATATTCATGAATA  400

seq1  TTTGCTTGCAACAAATGATACTATTTCAGTCTACGAGCTATCTGAACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTGCAACAAATGATACTATTTCAGTCTACGAGCTATCTGAACATG  450

seq1  CAGTTAGTTACAAATCAAGACAACTAGAGCAGTTTTTAAAAGTTAGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGTTACAAATCAAGACAACTAGAGCAGTTTTTAAAAGTTAGGCAA  500

seq1  AGTGCTGACTTCCAGTTTCTTTTATGACTTATGTATTCATTTATTATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGACTTCCAGTTTCTTTTATGACTTATGTATTCATTTATTATTCA  550

seq1  TGTATATCTGAGGATGGTTGCCATGTATGTGAGTTCATGAAGAGGGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATCTGAGGATGGTTGCCATGTATGTGAGTTCATGAAGAGGGCAAA  600

seq1  AGTTGTCCGATCCCCCGGGGCTGGAGTTACAGGAGGCTGTAAGCTGCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCCGATCCCCCGGGGCTGGAGTTACAGGAGGCTGTAAGCTGCTGC  650

seq1  TGTGGGTGCCAGGAGCCAAAATCCAGCCCCCTAGAAAAGCAGCAAATAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGCCAGGAGCCAAAATCCAGCCCCCTAGAAAAGCAGCAAATAGT  700

seq1  CTTAAATGCTAATCCACCTCTCCAGCACACTAGCTTCAACATTAACGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATGCTAATCCACCTCTCCAGCACACTAGCTTCAACATTAACGTTC  750

seq1  TTAAGCAACTCACCCAATTTATTTTATACGTGTGTAGAATATATACACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAACTCACCCAATTTATTTTATACGTGTGTAGAATATATACACAT  800

seq1  TTGAGAATCAGAAACACAAACAAAAAACTTAAACAAAGCCACAACTTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATCAGAAACACAAACAAAAAACTTAAACAAAGCCACAACTTACC  850

seq1  ATGCTTTAAGTCTTACCATTGAGTCTAATCAGTTCTAAATTCACTGTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTAAGTCTTACCATTGAGTCTAATCAGTTCTAAATTCACTGTACA  900

seq1  TTTAAAAC-TTTTTTCTTTTGACTATTATACTACT-ATAATTATATAAGT  948
      |||||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  TTTAAAACTTTTTTTCTTTTGACTATTATACTACTAATAATTATATAAGT  950

seq1  ATATGCATATATGCATATATGTGTATGTTTGTGTCTTTGTAAGTATGTAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATATATGCATATATGTGTATGTTTGTGTCTTTGTAAGTATGTAC  1000

seq1  ATGTGTGTGGAAATTCTTGTAGAGTTCAGAAAAGGGAATCACATCCCTGC  1048
      |||||||||||||||||||||||| |||||||||| |  |||||||||||
seq2  ATGTGTGTGGAAATTCTTGTAGAG-TCAGAAAAGGAATCCACATCCCTGC  1049

seq1  TGCTGGAATTACAGGTGATTATGAA-CTGTGTTGTGTGATGCCAAGCTCA  1097
      |||||  | |||| ||||||||||| |||||| |||||||| ||||||||
seq2  TGCTG--AATACAAGTGATTATGAACCTGTGTGGTGTGATG-CAAGCTCA  1096

seq1  C-AAATTCTGCAAGATATATATATATA  1123
      | |||| |||||||| |||| ||||||
seq2  CAAAATCCTGCAAGA-ATAT-TATATA  1121


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