BAC Information

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BAC

Clone NameB6Ng01-181O03
Chromosome4 (Build37)
Map Location 62,110,036 - 62,289,562
singlet/doubletdoublet
Overlap geneWdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3
Upstream geneLOC100039019, LOC100039177, LOC621093, LOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183
Downstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181O03.bB6Ng01-181O03.g
ACCGA007924GA007925
length1,1061,129
definitionB6Ng01-181O03.b B6Ng01-181O03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,288,449 - 62,289,562)(62,110,036 - 62,110,689)
sequence
gaattcttcactccttcctctgaactcacgacttggggctgcaaagaatt
aatccatgagaaagatatcctctgatactaagaggatcactgtgctgaaa
tatgagtgaagtcgagatcgtgacacagggtggctcagttggtaaagtgc
ttgctgcactagccatgtggccctgagtctactccccaacacccagggaa
aaagctaggcatggtggcatgtgcttgtgaccccaacactgcagaggccg
agacctgtggatccctagggctcactggctggccagggtagctgaatcag
caagtctcaggccccagtgagactcagtaaaatagggtggatggctcctg
ggtttgaccttttgcctccatgtgcatacacactcacacacatacaaaca
tgtgcatgtgtgtggatacacaccatgttagatctggacagagggaactc
agaacactcccactgttattaacaccgccatctcttcctgacttgttctt
tcctccgaggcttgggtgaccatgcccttcttggcactgtattttcagag
aggagtcaaaacacagacatggcttgggaccaaccatacaggcaactctg
gagcttcgtgggaaaggattgaagagctcccagaccgaatgcatatgccc
aagtaggtgacacatcttccagggtcccttcctcagtggcttggcttcaa
aactataccaacaaccagagtccttctcctcagccgttctgcccaagttc
caccaagtttctgttgcctcacaggccctgggtctgaggttgagcctaca
gaaatatgctgagctcggcccggccccctaataaaatcaccatttagcag
tgacatatttactttgccctaatgtgcccactaaaagcttttagacactt
actgttgaatcactatcagactcctccctgggaggaacacagcttcattt
cccggcagctgggctcagtgctcacaggctccagcaggagaggaagaggt
gccttccatcagaaattctgagcctgataggagccctcttcttccctagc
caaggtgcccacttaagaatcatcatcgtatcactatggaggggtagagc
acagaa
gaattcttcatctgcttcagagctactaagagctggctccccgagcccat
ccagcgatgagcacaggctccttttcctagagacctccgctaattgatct
ttcttcttttccctttttcctctttttcttctaatctctctccaggtatt
cctacctaaccttaacttttcctcgggttcaagacccttggaaaggcctg
tatacttattttgtgtaccatattttctctttgctcctactctctctccc
cgctttacttctgatagcttgtcctgaatttcctctagaattttcagccc
tatcttaatcacttgataacatgtgaaaaggaacaaaagggctcctaaca
ccagaaaaaattcaaggccaaacatattccactttacttctgatagactg
tcttgaatttccttagaaagttcaagatcagacttacctcgtaaagctgt
actcactggtactctcgttccccagctgaaaagttctgaattcatacagt
tgaatccttcttaacagtctgctttacgggaacctttattaccgcgaccc
gcagttctggtcctggaatgagggatcttccttgcgccagtcccgagttt
tttctcgtcccggaattcggcaccaattgttattagacgcgttctcacgc
ccggccagggaagaacaccacagaccagaatcttctgcggcaaagcttta
ttgcttacatcttcaggagccagagtgcaagaagcaagagagagagaaaa
cggaaaccccgtccctattaaggagaattttccttcgcctaggacgtgtc
actccctgattggctgcagcccatcggccgagttgacgtcacgagggaag
gcagagcacatggagtgaagaaccaccctcgggcacatgcgcagattatt
tgtttaccacttagaacacagctgtcagcgccatcttgttacggcgaatg
tgggcggcggctcccaacattccacagtgaagtgtcgctacggtgtggca
ttccgttggcctgtttctaacgtagggtaaaacatggcaaatattcccat
ggaactcattaaacagcgtgcatcattagtcacaaggttcgccaaattgc
taaaagttgatttcccagatgaagtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_62288449_62289562
seq2: B6Ng01-181O03.b_44_1149 (reverse)

seq1  TTCTGTGCTCTTCCCCCCTCCATTAGTGATACGATGATGATTCTTAAAGT  50
      |||||||||||   |||||||| |||||||||||||||||||||| ||||
seq2  TTCTGTGCTCT--ACCCCTCCA-TAGTGATACGATGATGATTCTT-AAGT  46

seq1  GGGCACTTGGGCCTTAGGGAAG-AGAGGGCTCCTATCAGGCTCAGAATTT  99
      |||||| | |||  |||||||| |||||||||||||||||||||||||||
seq2  GGGCACCTTGGC--TAGGGAAGAAGAGGGCTCCTATCAGGCTCAGAATTT  94

seq1  CTGATGGAAGGCACCTCCTTCCTCTCCCTGCTGGGGCCTGTGAGCACTTG  149
      |||||||||||||||| |||||||| |||||||| |||||||||||| ||
seq2  CTGATGGAAGGCACCT-CTTCCTCT-CCTGCTGGAGCCTGTGAGCAC-TG  141

seq1  GGCCCAGCCTGCC-GGAAATGAAGCTGTGTTCCTCCCAGGGAGGAGTCTG  198
       |||||| ||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCCCAG-CTGCCGGGAAATGAAGCTGTGTTCCTCCCAGGGAGGAGTCTG  190

seq1  ATAGTGATTCAACAGTAAGTGTCTAAAAGCTTTTAGTGGGCACATTAGGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGATTCAACAGTAAGTGTCTAAAAGCTTTTAGTGGGCACATTAGGG  240

seq1  CAAAGTAAATATGTCACTGCTAAATGGTGATTTTATTAGGGGGCCGGGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAAATATGTCACTGCTAAATGGTGATTTTATTAGGGGGCCGGGCC  290

seq1  GAGCTCAGCATATTTCTGTAGGCTCAACCTCAGACCCAGGGCCTGTGAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGCATATTTCTGTAGGCTCAACCTCAGACCCAGGGCCTGTGAGG  340

seq1  CAACAGAAACTTGGTGGAACTTGGGCAGAACGGCTGAGGAGAAGGACTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAACTTGGTGGAACTTGGGCAGAACGGCTGAGGAGAAGGACTCT  390

seq1  GGTTGTTGGTATAGTTTTGAAGCCAAGCCACTGAGGAAGGGACCCTGGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTGGTATAGTTTTGAAGCCAAGCCACTGAGGAAGGGACCCTGGAA  440

seq1  GATGTGTCACCTACTTGGGCATATGCATTCGGTCTGGGAGCTCTTCAATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTCACCTACTTGGGCATATGCATTCGGTCTGGGAGCTCTTCAATC  490

seq1  CTTTCCCACGAAGCTCCAGAGTTGCCTGTATGGTTGGTCCCAAGCCATGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCACGAAGCTCCAGAGTTGCCTGTATGGTTGGTCCCAAGCCATGT  540

seq1  CTGTGTTTTGACTCCTCTCTGAAAATACAGTGCCAAGAAGGGCATGGTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTTGACTCCTCTCTGAAAATACAGTGCCAAGAAGGGCATGGTCA  590

seq1  CCCAAGCCTCGGAGGAAAGAACAAGTCAGGAAGAGATGGCGGTGTTAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCCTCGGAGGAAAGAACAAGTCAGGAAGAGATGGCGGTGTTAATA  640

seq1  ACAGTGGGAGTGTTCTGAGTTCCCTCTGTCCAGATCTAACATGGTGTGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGGAGTGTTCTGAGTTCCCTCTGTCCAGATCTAACATGGTGTGTA  690

seq1  TCCACACACATGCACATGTTTGTATGTGTGTGAGTGTGTATGCACATGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACACATGCACATGTTTGTATGTGTGTGAGTGTGTATGCACATGGA  740

seq1  GGCAAAAGGTCAAACCCAGGAGCCATCCACCCTATTTTACTGAGTCTCAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGGTCAAACCCAGGAGCCATCCACCCTATTTTACTGAGTCTCAC  790

seq1  TGGGGCCTGAGACTTGCTGATTCAGCTACCCTGGCCAGCCAGTGAGCCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCTGAGACTTGCTGATTCAGCTACCCTGGCCAGCCAGTGAGCCCT  840

seq1  AGGGATCCACAGGTCTCGGCCTCTGCAGTGTTGGGGTCACAAGCACATGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCCACAGGTCTCGGCCTCTGCAGTGTTGGGGTCACAAGCACATGC  890

seq1  CACCATGCCTAGCTTTTTCCCTGGGTGTTGGGGAGTAGACTCAGGGCCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGCCTAGCTTTTTCCCTGGGTGTTGGGGAGTAGACTCAGGGCCAC  940

seq1  ATGGCTAGTGCAGCAAGCACTTTACCAACTGAGCCACCCTGTGTCACGAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAGTGCAGCAAGCACTTTACCAACTGAGCCACCCTGTGTCACGAT  990

seq1  CTCGACTTCACTCATATTTCAGCACAGTGATCCTCTTAGTATCAGAGGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACTTCACTCATATTTCAGCACAGTGATCCTCTTAGTATCAGAGGAT  1040

seq1  ATCTTTCTCATGGATTAATTCTTTGCAGCCCCAAGTCGTGAGTTCAGAGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTCATGGATTAATTCTTTGCAGCCCCAAGTCGTGAGTTCAGAGG  1090

seq1  AAGGAGTGAAGAATTC  1114
      ||||||||||||||||
seq2  AAGGAGTGAAGAATTC  1106

seq1: chr4_62110036_62110689
seq2: B6Ng01-181O03.g_539_1196

seq1  CCAGCTGAAAAGTTCTGAATTCATACAGTTGAATCCTTCTTAACAGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGAAAAGTTCTGAATTCATACAGTTGAATCCTTCTTAACAGTCTG  50

seq1  CTTTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTCCTGGAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTCCTGGAATGA  100

seq1  GGGATCTTCCTTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTTCCTTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGC  150

seq1  ACCAATTGTTATTAGACGCGTTCTCACGCCCGGCCA-GGAAGAACACCAC  199
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACCAATTGTTATTAGACGCGTTCTCACGCCCGGCCAGGGAAGAACACCAC  200

seq1  AGACCAGAATCTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGAATCTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCC  250

seq1  AGAGTGCAAGAAGCAAGAGAGAGAGAAAAC-GAAACCCCGTCCCTATTAA  298
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGAGTGCAAGAAGCAAGAGAGAGAGAAAACGGAAACCCCGTCCCTATTAA  300

seq1  GGAGAATTTTCCTTCGCCTAGGACGTGTCACTCCCTGATTGGCTGCAGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATTTTCCTTCGCCTAGGACGTGTCACTCCCTGATTGGCTGCAGCC  350

seq1  CATCGGCCGAGTTGACGTCACGA-GGAAGGCAGAGCACATGGAGTGAAGA  397
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATCGGCCGAGTTGACGTCACGAGGGAAGGCAGAGCACATGGAGTGAAGA  400

seq1  ACCACCCTC-GGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAG  446
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCTCGGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAG  450

seq1  CTGTCAGCGCCATCTTGTAACGGCGAATGTGGGC-GCGGCTCCCAACATT  495
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  CTGTCAGCGCCATCTTGTTACGGCGAATGTGGGCGGCGGCTCCCAACATT  500

seq1  CCACAGTGAAGTGTCGCTAC-GTGTGGCATTCCGTT-GTCTGTTTCTTAC  543
      |||||||||||||||||||| ||||||||||||||| | |||||||| ||
seq2  CCACAGTGAAGTGTCGCTACGGTGTGGCATTCCGTTGGCCTGTTTCTAAC  550

seq1  GTAGGGTAAAACATGGGCAATATTCCCCATGACCTCATTTTAAACAGC-T  592
      ||||||||||||||||  |||||||||   || ||||  ||||||||| |
seq2  GTAGGGTAAAACATGGCAAATATTCCCATGGAACTCA--TTAAACAGCGT  598

seq1  GCATTCATTTTAGTCACAAAAGTCAGCCAATTGCTAAAAGGTGATTT-CC  641
      ||| |||  ||||||||||   ||  | |||||||||||| |||||| ||
seq2  GCA-TCA--TTAGTCACAAGGTTCGCCAAATTGCTAAAAGTTGATTTCCC  645

seq1  AGATGAAGTGGGG  654
      |||||||||||||
seq2  AGATGAAGTGGGG  658