BAC Information

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BAC

Clone NameB6Ng01-182A01
Chromosome4 (Build37)
Map Location 144,651,952 - 144,800,739
singlet/doubletdoublet
Overlap geneVps13d
Upstream genePramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3
Downstream geneTnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182A01.bB6Ng01-182A01.g
ACCGA008012GA008013
length1,084723
definitionB6Ng01-182A01.b B6Ng01-182A01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,651,952 - 144,653,032)(144,800,103 - 144,800,739)
sequence
gaattcatcttggtttgtattactaggcataatggccatgcatttgttga
cagtactcaggaggcaaaggcaagcagattctctgtgagttcttggctag
cctggtcctatacagtaagttataggccagccaaggccgcatagtaagac
cttgtctcaaaaacatagagaacttgtgagatgcattgaggtggaagctc
ttcacaggatgactcttttgaagattagatatttcttccatgaactgcag
agatgcctcagtcataaagagtacttgcgggtcttgtaaaggtcctggta
tagtttccagcatccatactgagtggttcacaactgtctctaactccaga
tataggaggacagctctgtcttcccttggcactggcactcatgtgtacac
atacacacacagatacacacataaatgagcattcaacaatactctcatcc
tggtacctgcacatcctgtatgctaagctcaagcatgtgactggctgcca
gctgagtgtaatggatgttgattcctgtcaggcttgcaaagaccagttct
tctgggactttgttaattaaagagacaccaactccgccttctaaccgtac
aagcacctgaaaggaaatcaaaaccttgtcaattgtttataacaggactc
atagaagccagaagagtacacagacatgaatggctttcagtctctcttct
ctttacctctcaacagtataaaactactacagagtttggacagttacctt
tctggctcaaatgtcccaatgtccctggaagccaagccttccattttgga
tggactcctcggtcagtcacaatgtcattggggtgtgaagacactttacc
caacacacagttgctgcacagtacaggagactgattgttctagaacctct
ttccttgttagggttattctgtgcatctccacagcatctgacatggctcc
acacagacatttgattaaacactgctcaccaagatcaagtaagcatgctc
ccctcatgctcatctcttctctacctcaagcttgtcattctcttcccaaa
gcccaaagaacaaagggaagaaaggatttgaggc
gaattccaggacagccaggactacacagagaaaccctgtcccaaaaccca
aaaaacaaaaaacaaaacaaaacaaaacaaaaaccactgccttagagggt
gagacttcccttctctgttaaaaaccctagaagtttcctttcacggctgc
tctgaacagtcaagtttgactgtgaaagttaactgcagaacctctcattt
cctttgatttgcagatattatgcaaaaagaaaaaaaaagctcatgaactt
ttttgttggggttgggggttaagacaggctctcacttagggcgggcgtgg
tggctcatgcctttaatcccagcactcgggaggcagaggcaggtggattt
ctgagttcaaggccagcctggtctacgaagtgagttccaggacagccagg
acaatacagagaaaccctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaccaacaaaacaaaacaaaaagacagggtctcactatgt
aatctgggttggcctgaaactcactaagtacacaaggttggcctcaaact
cagagatctgaatgcttcagcctccaaagggctgccataaaaggcatgtg
ccaccatactcagaacttcatgaattctttgttgaaactctggcactgag
cattgaaaaaccaagagtgtggggtgtagcttgattgcagagcacttgtc
tacattcttggggggggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_144651952_144653032
seq2: B6Ng01-182A01.b_42_1125

seq1  GAATTCATCTTGGTTTGTATTACTAGGCATAATGGCCATGCATTTGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTGGTTTGTATTACTAGGCATAATGGCCATGCATTTGTTGA  50

seq1  CAGTACTCAGGAGGCAAAGGCAAGCAGATTCTCTGTGAGTTCTTGGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTCAGGAGGCAAAGGCAAGCAGATTCTCTGTGAGTTCTTGGCTAG  100

seq1  CCTGGTCCTATACAGTAAGTTATAGGCCAGCCAAGGCCGCATAGTAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCTATACAGTAAGTTATAGGCCAGCCAAGGCCGCATAGTAAGAC  150

seq1  CTTGTCTCAAAAACATAGAGAACTTGTGAGATGCATTGAGGTGGAAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTCAAAAACATAGAGAACTTGTGAGATGCATTGAGGTGGAAGCTC  200

seq1  TTCACAGGATGACTCTTTTGAAGATTAGATATTTCTTCCATGAACTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGATGACTCTTTTGAAGATTAGATATTTCTTCCATGAACTGCAG  250

seq1  AGATGCCTCAGTCATAAAGAGTACTTGCGGGTCTTGTAAAGGTCCTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCTCAGTCATAAAGAGTACTTGCGGGTCTTGTAAAGGTCCTGGTA  300

seq1  TAGTTTCCAGCATCCATACTGAGTGGTTCACAACTGTCTCTAACTCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCCAGCATCCATACTGAGTGGTTCACAACTGTCTCTAACTCCAGA  350

seq1  TATAGGAGGACAGCTCTGTCTTCCCTTGGCACTGGCACTCATGTGTACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGAGGACAGCTCTGTCTTCCCTTGGCACTGGCACTCATGTGTACAC  400

seq1  ATACACACACAGATACACACATAAATGAGCATTCAACAATACTCTCATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACAGATACACACATAAATGAGCATTCAACAATACTCTCATCC  450

seq1  TGGTACCTGCACATCCTGTATGCTAAGCTCAAGCATGTGACTGGCTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCTGCACATCCTGTATGCTAAGCTCAAGCATGTGACTGGCTGCCA  500

seq1  GCTGAGTGTAATGGATGTTGATTCCTGTCAGGCTTGCAAAGACCAGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTGTAATGGATGTTGATTCCTGTCAGGCTTGCAAAGACCAGTTCT  550

seq1  TCTGGGACTTTGTTAATTAAAGAGACACCAACTCCGCCTTCTAACCGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGACTTTGTTAATTAAAGAGACACCAACTCCGCCTTCTAACCGTAC  600

seq1  AAGCACCTGAAAGGAAATCAAAACCTTGTCAATTGTTTATAACAGGACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCTGAAAGGAAATCAAAACCTTGTCAATTGTTTATAACAGGACTC  650

seq1  ATAGAAGCCAGAAGAGTACACAGACATGAATGGCTTTCAGTCTCTCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGCCAGAAGAGTACACAGACATGAATGGCTTTCAGTCTCTCTTCT  700

seq1  CTTTACCTCTCAACAGTATAAAACTACTACAGAGTTTGGACAGTTACCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCTCTCAACAGTATAAAACTACTACAGAGTTTGGACAGTTACCTT  750

seq1  TCTGGCTCAAATGTCCCAATGTCCCTGGAAGCCAAGCCTTCCATTTTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCAAATGTCCCAATGTCCCTGGAAGCCAAGCCTTCCATTTTGGA  800

seq1  TGGACTCCTCGGTCAGGTCACAATGTCATTGGGGTGTGAAGACACTTTAC  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGGACTCCTCGGTCA-GTCACAATGTCATTGGGGTGTGAAGACACTTTAC  849

seq1  CCAACACACAGTTGCTGCACAGTACAGGAGACTGATTGTTCTAGAACCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACACAGTTGCTGCACAGTACAGGAGACTGATTGTTCTAGAACCTC  899

seq1  TTTCCTTGTTAGGGTTATTCTGTGCATCTCCACAGCATCTGACATGGCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGTTAGGGTTATTCTGTGCATCTCCACAGCATCTGACATGGCTC  949

seq1  CACACAGACATTTGATTAAACACTGCTCACCAAGATCAAGTAAGCATGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGACATTTGATTAAACACTGCTCACCAAGATCAAGTAAGCATGCT  999

seq1  -CCCTCATGCTCATCTCTTCTCTACCTCAAGCTTGTCATTCTCTTCCCAA  1049
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCATGCTCATCTCTTCTCTACCTCAAGCTTGTCATTCTCTTCCCAA  1049

seq1  AGCCCAAAG-ACAAA-GGAAG-AAGGATTTGAGGC  1081
      ||||||||| ||||| ||||| |||||||||||||
seq2  AGCCCAAAGAACAAAGGGAAGAAAGGATTTGAGGC  1084

seq1: chr4_144800103_144800739
seq2: B6Ng01-182A01.g_147_786 (reverse)

seq1  --TCCCCCCCCCCCAAGAATGTAGACAAGTGCTCTGCAATCAAGCTACA-  47
         |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCCCCCCCCCCCCCAAGAATGTAGACAAGTGCTCTGCAATCAAGCTACAC  50

seq1  CCCACACTCTTGGTTTTTCAATGCTCAGTGCCAGAGTTTCAACAAAGAAT  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTCTTGGTTTTTCAATGCTCAGTGCCAGAGTTTCAACAAAGAAT  100

seq1  TCATGAAGTTCTGAGTATGGTGGCACATGCCTTTTATGGCAGCCCTTTGG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGTTCTGAGTATGGTGGCACATGCCTTTTATGGCAGCCCTTTGG  150

seq1  AGGCTGAAGCATTCAGATCTCTGAGTTTGAGGCCAACCTTGTGTACTTAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAAGCATTCAGATCTCTGAGTTTGAGGCCAACCTTGTGTACTTAG  200

seq1  TGAGTTTCAGGCCAACCCAGATTACATAGTGAGACCCTGTCTTTTTGTTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCAGGCCAACCCAGATTACATAGTGAGACCCTGTCTTTTTGTTT  250

seq1  TGTTTTGTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  297
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  300

seq1  GAGACAGGGTTTCTCTGTATTGTCCTGGCTGTCCTGGAACTCACTTCGTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTTTCTCTGTATTGTCCTGGCTGTCCTGGAACTCACTTCGTA  350

seq1  GACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGT  400

seq1  GCTGGGATTAAAGGCATGAGCCACCACGCCCGCCCTAAGTGAGAGCCTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAGGCATGAGCCACCACGCCCGCCCTAAGTGAGAGCCTGT  450

seq1  CTTAACCCCCAACCCCAACAAAAAAGTTCATGAGCTTTTTTTTTCTTTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCCCCAACCCCAACAAAAAAGTTCATGAGCTTTTTTTTTCTTTTT  500

seq1  GCATAATATCTGCAAATCAAAGGAAATGAGAGGTTCTGCAGTTAACTTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATATCTGCAAATCAAAGGAAATGAGAGGTTCTGCAGTTAACTTTC  550

seq1  ACAGTCAAACTTGACTGTTCAGAGCAGCCGTGAAAGGAAACTTCTAGGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAAACTTGACTGTTCAGAGCAGCCGTGAAAGGAAACTTCTAGGGT  600

seq1  TTTTAACAGAGAAGGGAAGTCTCACCCTCTAAGGCAGTGG  637
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACAGAGAAGGGAAGTCTCACCCTCTAAGGCAGTGG  640