BAC Information

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BAC

Clone NameB6Ng01-182C09
Chromosome9 (Build37)4 (Build37)
Map Location 80,586,181 - 80,587,18169,161,482 - 69,161,516
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6, Impg1
Downstream geneEG666534, LOC100039038, Htr1b, LOC671392
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182C09.bB6Ng01-182C09.g
ACCGA008122GA008123
length1,003537
definitionB6Ng01-182C09.b B6Ng01-182C09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,586,181 - 80,587,181)(69,161,482 - 69,161,516)
sequence
gaattccaggacagccagggctatacagagaaaccctgtctccaaaacaa
aacaaaacaaaacaaaaaatggatatttaagagacccatggtacaaaaaa
catacgcgatggaaatcagaaaataacaactaataaactcttggtgagac
tagtcacccaagggatcacccaaaataagatccaagtgctcaaatatcca
atgtaagaacattaaaaacacatctaagcagagcctacagatttttaaat
aatatgataatgttgggaacagtttaattaattaattaattaaggtcaat
ttaattaagtttaacatttatgttaaattagaaaatgtagaaaaggcatt
tcaacaaaactatttctaaaaggaaatataaaaccaaagcgtttagtaac
tatgaaagtagttaaatctatgatttcaaacttcccacagggaactcttt
catccactattggctggttataacatattcccttctctttttgaaaaatt
tattttctttcctttttgaaattataatataattacataatttcttcctt
cccttttcccaatttaaattttctcatgtcctccttgttctttttcaaat
tcatggcctcttatattattatatatatatatataatatatataatatat
gtatatataactaaaaataatcagttctgtctatattatttattatttct
atgttttcaagtctgatcctttgatatatatatactagtctcaatcaaat
taatgtgcttttccctggagaagactatcttactatcagcattccttagt
tgactgaattttttgtgtggtattgaggccacctgggttttctctggtcc
attgtgacatgtctgttgtccttgcttacctcatgtttaggcagtcatgt
tgggagacttgtgggcatagcttctggcattcctaggagatacaatctta
cagtaaactccctgatctctagatcatacagtctgtctttccccttcttt
tca

ctgattggttcaaataaattttagaaagctaaaataatctataaaaattc
taaagaggcagtttttttttagctattttgccagaaagatataatgaagg
aagcatcaagaagaatgtgctccctcctcatagaatagtaagtgaaggat
gcgtgggaaggagcacagtgagatttcatgcattacaagcatgtaaacct
cactagaaacagaaataggcttgggacacctttacaacatttctaggtca
ggtccaaggacgaggccacaggtgtgcactatgacatagaaaggccatga
ataaatacaactattgctttgaacttataatgagcttataggatgagaca
ccaccaataaaccaactactctcaacttattatcaacatcatgttgtata
acatttaatctgtgaggtaatttttttcttacatagagaacttttgtctg
aaaagctataaaaagctgaaaggaaaaactaaaagtagtggagccctttt
tcttctttagtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_80586181_80587181
seq2: B6Ng01-182C09.b_42_1040

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCCAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCCAAAACAA  50

seq1  AACAAAACAAAACAAAAAATGGATATTTAAGAGACCCATGGTACAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAACAAAAAATGGATATTTAAGAGACCCATGGTACAAAAAA  100

seq1  CATACGCGATGGAAATCAGAAAATAACAACTAATAAACTCTTGGTGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGCGATGGAAATCAGAAAATAACAACTAATAAACTCTTGGTGAGAC  150

seq1  TAGTCACCCAAGGGATCACCCAAAATAAGATCCAAGTGCTCAAATATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACCCAAGGGATCACCCAAAATAAGATCCAAGTGCTCAAATATCCA  200

seq1  ATGTAAGAACATTAAAAACACATCTAAGCAGAGCCTACAGATTTTTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGAACATTAAAAACACATCTAAGCAGAGCCTACAGATTTTTAAAT  250

seq1  AATATGATAATGTTGGGAACAGTTTAATTAATTAATTAATTAAGGTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATAATGTTGGGAACAGTTTAATTAATTAATTAATTAAGGTCAAT  300

seq1  TTAATTAAGTTTAACATTTATGTTAAATTAGAAAATGTAGAAAAGGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAAGTTTAACATTTATGTTAAATTAGAAAATGTAGAAAAGGCATT  350

seq1  TCAACAAAACTATTTCTAAAAGGAAATATAAAACCAAAGCGTTTAGTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAAACTATTTCTAAAAGGAAATATAAAACCAAAGCGTTTAGTAAC  400

seq1  TATGAAAGTAGTTAAATCTATGATTTCAAACTTCCCACAGGGAACTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGTAGTTAAATCTATGATTTCAAACTTCCCACAGGGAACTCTTT  450

seq1  CATCCACTATTGGCTGGTTATAACATATTCCCTTCTCTTTTTGAAAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACTATTGGCTGGTTATAACATATTCCCTTCTCTTTTTGAAAAATT  500

seq1  TATTTTCTTTCCTTTTTGAAATTATAATATAATTACATAATTTCTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTTCCTTTTTGAAATTATAATATAATTACATAATTTCTTCCTT  550

seq1  CCCTTTTCCCAATTTAAATTTTCTCATGTCCTCCTTGTTCTTTTTCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTCCCAATTTAAATTTTCTCATGTCCTCCTTGTTCTTTTTCAAAT  600

seq1  TCATGGCCTCTTATATTATTATATATATATATATAATATATATAATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCCTCTTATATTATTATATATATATATATAATATATATAATATAT  650

seq1  GTATATATAACTAAAAATAATCAGTTCTGTCTATATTATTTATTATTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATAACTAAAAATAATCAGTTCTGTCTATATTATTTATTATTTCT  700

seq1  ATGTTTTCAAGTCTGATCCTTTGATATATATATACTAGTCTCAATCAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCAAGTCTGATCCTTTGATATATATATACTAGTCTCAATCAAAT  750

seq1  TAATGTGCTTTTCCCTGGAGAAGACTATCTTACTATCAGCATTCCTTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGCTTTTCCCTGGAGAAGACTATCTTACTATCAGCATTCCTTAGT  800

seq1  TGACTGAATTTTTTGTGTGGTATTGAGGCCACCTGGGTTTTCTCTGGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAATTTTTTGTGTGGTATTGAGGCCACCTGGGTTTTCTCTGGTCC  850

seq1  ATTGTGACATGTCTGTTGTCCTTGCTTACCTCATGTTTAGGCAGTCATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGACATGTCTGTTGTCCTTGCTTACCTCATGTTTAGGCAGTCATGT  900

seq1  TGGGAGACTTGTGGGCATAGCTTCTGGCATTCCTAGGAGATACAATCTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGACTTGTGGGCATAGCTTCTGGCATTCCTAGGAGATACAATCTTA  950

seq1  CAGTAAACTCCCTGATCCTCTAGATCATACAGTCTGTCTTTCCCCCTTCT  1000
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  CAGTAAACTCCCTGAT-CTCTAGATCATACAGTCTGTCTTT-CCCCTTCT  998

seq1  T  1001
      |
seq2  T  999


seq1: chr4_69161482_69161516
seq2: B6Ng01-182C09.g_573_607 (reverse)

seq1  ACACACACACACACACACACACACACACTAAAGAA  35
      |||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACTAAAGAA  35


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