BAC Information

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BAC

Clone NameB6Ng01-182J09
Chromosome4 (Build37)
Map Location 35,645,773 - 35,840,111
singlet/doubletdoublet
Overlap geneLingo2
Upstream gene1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182J09.bB6Ng01-182J09.g
ACCGA008436GA008437
length1,035802
definitionB6Ng01-182J09.b B6Ng01-182J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,839,082 - 35,840,111)(35,645,773 - 35,646,561)
sequence
gaattcagggatagaagcattaacttcctcttctagatggacagaatgaa
aaggaagaatgtagaaagtcacacctgagcttcagtttcattcattcctt
ccacttaaggactcaggggtttgtgaatcattgacttaacagaactctgc
cttcctaatgctgccaccctttcatagagttcctcatgttgtggtgactc
acaaccataaaattatttagttgctattttataactaatttttctactgt
tatgaataatcatgtaaatatctctaatgtagggtatctgataagtggcc
cctaaaggggctgtgacccacaagtggagaacctctgagatatttaatct
gcattcacaggaaaggccaggtccatgtttacttcctgttctttaccttt
aattccctcaggaggaacacaatgaagtaaagatcagatcacgagcagcc
tttctgtgaaggagagtaagatcctactgcctacctctcaggtttctagt
ctcagttttcacatattttaaattgatggacacttgtctatgacttctta
gtgtatgagctaagtcctctaagttgtaaaagccacaggtaactgactgg
gtgagcatttccctaaatacctccaggttgcctttagtgggtttcagctg
ataaagagttttagtcaaaccatctcaaatattctattaacattcgggaa
cacttcactcagacatgataatgaaggaacagaatgaaaaaacaacaggt
atgtgagcttttaagggcatcactgtaaggtagtagagccccatgaacaa
ctctgtcatcccatgaatctcctcaagtctgagtggtcaccggggacagg
gggctcttctcttcttataaccatgcattttagatatttctttgactaaa
tgactgcaaacagtccaaaagatgggattgagttagtagttttcctaagt
ttcaaattgtgttcagccaaaatcacagtacattgttttggggtcttttt
gtttgtttgtttttttttttttggattgggtttgg
gaattcttcgggtggcgcttaaatgaaagagcttatataaatcaagatgg
tggggctgaccccatgatctctttgtattacatggttgttctgtgctcag
tgggttaattcccaatagggtatttgaactgatagagtggaaggtttaag
gaaatctgctatagtgttctctctctctctctctctctctctctctctct
ctctctctctctctctctctctctctccctctctctctatctccttccct
cccccttcctcccttcctcctatcttcttcttttctttctccacccctcc
cgctcatgtgtgtgtttaaagaaatatttaacttttatgagaactctata
tgtatgtgatagatgcaaactatttgtcttttgtacatgcagctaatagc
caatggctaaagaagtagattagaaatagtgaagtgcctctgtgctatgg
tattagcgtcttgatctcttgaggtgaaggaataatatgcccagtgaggc
tgcagttagagaaaagttaacataaatgtcacttctgccttggagggata
gctggtaaacagatttgtctcctaatgtgacaataaatacctattttgca
agtgcaagcagatttagggcctttctgtcacagacatgcactacctagtg
gcatgtgcttcaaaatttcagactgttacttcctgtgtagtattctcatc
taaaatataattagtggggccctttattatgatgattgatattcttcagg
caggacataatctctcaggtccctttttctttttactatcttttttttgg
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_35839082_35840111
seq2: B6Ng01-182J09.b_42_1076 (reverse)

seq1  CCAAACC-------AAAAAAAAAAAACAAACAAACAAAAAGAACCCCAAA  43
      |||||||       ||||||||||||||||||||||||||| ||||||||
seq2  CCAAACCCAATCCAAAAAAAAAAAAACAAACAAACAAAAAG-ACCCCAAA  49

seq1  ACAATGTACTGTGATTTTTGGCTGAACACAATTTGAAACTTAGGAAAACT  93
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACAATGTACTGTGA-TTTTGGCTGAACACAATTTGAAACTTAGGAAAACT  98

seq1  ACTAACTCAATCCCATCTTTTGGACTGTTTGCAGTCATTTAGTCAAAGAA  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTCAATCCCATCTTTTGGACTGTTTGCAGTCATTTAGTCAAAGAA  148

seq1  ATATCTAAAATGCATGGTTATAAGAAGAGAAGAGCCCCCTGTCCCCGGTG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAAAATGCATGGTTATAAGAAGAGAAGAGCCCCCTGTCCCCGGTG  198

seq1  ACCACTCAGACTTGAGGAGATTCATGGGATGACAGAGTTGTTCATGGGGC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCAGACTTGAGGAGATTCATGGGATGACAGAGTTGTTCATGGGGC  248

seq1  TCTACTACCTTACAGTGATGCCCTTAAAAGCTCACATACCTGTTGTTTTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTACCTTACAGTGATGCCCTTAAAAGCTCACATACCTGTTGTTTTT  298

seq1  TCATTCTGTTCCTTCATTATCATGTCTGAGTGAAGTGTTCCCGAATGTTA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTGTTCCTTCATTATCATGTCTGAGTGAAGTGTTCCCGAATGTTA  348

seq1  ATAGAATATTTGAGATGGTTTGACTAAAACTCTTTATCAGCTGAAACCCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATATTTGAGATGGTTTGACTAAAACTCTTTATCAGCTGAAACCCA  398

seq1  CTAAAGGCAACCTGGAGGTATTTAGGGAAATGCTCACCCAGTCAGTTACC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGCAACCTGGAGGTATTTAGGGAAATGCTCACCCAGTCAGTTACC  448

seq1  TGTGGCTTTTACAACTTAGAGGACTTAGCTCATACACTAAGAAGTCATAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTTTACAACTTAGAGGACTTAGCTCATACACTAAGAAGTCATAG  498

seq1  ACAAGTGTCCATCAATTTAAAATATGTGAAAACTGAGACTAGAAACCTGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTCCATCAATTTAAAATATGTGAAAACTGAGACTAGAAACCTGA  548

seq1  GAGGTAGGCAGTAGGATCTTACTCTCCTTCACAGAAAGGCTGCTCGTGAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGGCAGTAGGATCTTACTCTCCTTCACAGAAAGGCTGCTCGTGAT  598

seq1  CTGATCTTTACTTCATTGTGTTCCTCCTGAGGGAATTAAAGGTAAAGAAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTTTACTTCATTGTGTTCCTCCTGAGGGAATTAAAGGTAAAGAAC  648

seq1  AGGAAGTAAACATGGACCTGGCCTTTCCTGTGAATGCAGATTAAATATCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTAAACATGGACCTGGCCTTTCCTGTGAATGCAGATTAAATATCT  698

seq1  CAGAGGTTCTCCACTTGTGGGTCACAGCCCCTTTAGGGGCCACTTATCAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTTCTCCACTTGTGGGTCACAGCCCCTTTAGGGGCCACTTATCAG  748

seq1  ATACCCTACATTAGAGATATTTACATGATTATTCATAACAGTAGAAAAAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTACATTAGAGATATTTACATGATTATTCATAACAGTAGAAAAAT  798

seq1  TAGTTATAAAATAGCAACTAAATAATTTTATGGTTGTGAGTCACCACAAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATAAAATAGCAACTAAATAATTTTATGGTTGTGAGTCACCACAAC  848

seq1  ATGAGGAACTCTATGAAAGGGTGGCAGCATTAGGAAGGCAGAGTTCTGTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAACTCTATGAAAGGGTGGCAGCATTAGGAAGGCAGAGTTCTGTT  898

seq1  AAGTCAATGATTCACAAACCCCTGAGTCCTTAAGTGGAAGGAATGAATGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAATGATTCACAAACCCCTGAGTCCTTAAGTGGAAGGAATGAATGA  948

seq1  AACTGAAGCTCAGGTGTGACTTTCTACATTCTTCCTTTTCATTCTGTCCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGCTCAGGTGTGACTTTCTACATTCTTCCTTTTCATTCTGTCCA  998

seq1  TCTAGAAGAGGAAGTTAATGCTTCTATCCCTGAATTC  1030
      |||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAGAGGAAGTTAATGCTTCTATCCCTGAATTC  1035

seq1: chr4_35645773_35646561
seq2: B6Ng01-182J09.g_64_860

seq1  GAATTCTTCGGGTGGCGCTTAAATGAAAGAGCTTATATAAATCAAGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGGGTGGCGCTTAAATGAAAGAGCTTATATAAATCAAGATGG  50

seq1  TGGGGCTGACCCCATGATCTCTTTGTATTACATGGTTGTTCTGTGCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGACCCCATGATCTCTTTGTATTACATGGTTGTTCTGTGCTCAG  100

seq1  TGGGTTAATTCCCAATAGGGTATTTGAACTGATAGAGTGGAAGGTTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTAATTCCCAATAGGGTATTTGAACTGATAGAGTGGAAGGTTTAAG  150

seq1  GAAATCTGCTATAGTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTGCTATAGTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  200

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCCTTCCCT  250
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTATCTCCTTCCCT  250

seq1  CCCCCTTCCTCCCTTCCTCCTATCTTCTTCTTTTCTTTCTCCACCCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTCCTCCCTTCCTCCTATCTTCTTCTTTTCTTTCTCCACCCCTCC  300

seq1  CGCTCATGTGTGTGTTTAAAGAAATATTTAACTTTTATGAGAACTCTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCATGTGTGTGTTTAAAGAAATATTTAACTTTTATGAGAACTCTATA  350

seq1  TGTATGTGATAGATGCAAACTATTTGTCTTTTGTACATGCAGCTAATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGATAGATGCAAACTATTTGTCTTTTGTACATGCAGCTAATAGC  400

seq1  CAATGGCTAAAGAAGTAGATTAGAAATAGTGAAGTGCCTCTGTGCTATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCTAAAGAAGTAGATTAGAAATAGTGAAGTGCCTCTGTGCTATGG  450

seq1  TATTAGCGTCTTGATCTCTTGTGGTG-AGGAATAATATGCCCAGTGAGGC  499
      ||||||||||||||||||||| |||| |||||||||||||||||||||||
seq2  TATTAGCGTCTTGATCTCTTGAGGTGAAGGAATAATATGCCCAGTGAGGC  500

seq1  TGCAGTTAGAGAAAAGTTCACATAAATGTTACTTCTGCCTTGGAGGGATA  549
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  TGCAGTTAGAGAAAAGTTAACATAAATGTCACTTCTGCCTTGGAGGGATA  550

seq1  GCTGGTAAACAGATTTGTCTCCTAATGTGACAATAAATACCTATTTTGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTAAACAGATTTGTCTCCTAATGTGACAATAAATACCTATTTTGCA  600

seq1  ATTGCAAGCAAGATTTAGGGCCTTTCTGTCACAGACATGCACTACCTAGT  649
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAGC-AGATTTAGGGCCTTTCTGTCACAGACATGCACTACCTAGT  649

seq1  GGCATGTGCTTC-AAATTTCAGACTGTCAC-TCCTG-GAAG-ATTCTCAT  695
      |||||||||||| |||||||||||||| || ||||| | || ||||||||
seq2  GGCATGTGCTTCAAAATTTCAGACTGTTACTTCCTGTGTAGTATTCTCAT  699

seq1  CTTAATTATATTTATTGGTGCCC--AAATAAGATGA-TGACATTCTTCAG  742
      || || |||| ||| ||| ||||   | || ||||| ||| |||||||||
seq2  CTAAAATATAATTAGTGGGGCCCTTTATTATGATGATTGATATTCTTCAG  749

seq1  GCAGGACATAATCTCTCAGGTACC-ATTTCTTTTTCCTATCTTTTTTT  789
      ||||||||||||||||||||| ||  ||||||||| ||||||||||||
seq2  GCAGGACATAATCTCTCAGGTCCCTTTTTCTTTTTACTATCTTTTTTT  797