BAC Information

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BAC

Clone NameB6Ng01-183A23
Chromosome4 (Build37)
Map Location 49,259,681 - 49,260,847
singlet/doubletsinglet
Overlap geneE130309F12Rik
Upstream geneTxndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
Downstream geneLOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183A23.bB6Ng01-183A23.g
ACCGA008785GA008786
length9841,159
definitionB6Ng01-183A23.b B6Ng01-183A23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggacagccagggctacacagagaaacacagtctcgaaaaaca
aaaatcaaaaacaaacaaacaaattagccatattgcttctgcagcgttct
gtggagagaaactatgcttttccctttcctaataaggtagttgttcagga
tcaaaccatatgccaataagtagatccttttaagatactagaaggcattt
attaagttcgttgacatccaaatttcaaatttctaaaataatggtgtgat
ttaaataatgtgcatgggaatacatttaatatgcacggggatatattttc
ccacttctttgtcttttaagaatctagagttttaaagttccacaatacct
tgtccttgagaattaataatatgttgacaaaacatcacaaatacttgact
gttatagtaagtattaatgtaacataggcagtgactaattgcactttcaa
ttgttttttttttttttaatttttttcattaggtattttcctcatttaca
tttccagtgctataccaaaagtcccccataccctcccccccacaccccct
ctacccacccattccccctttttttccctggcgttcccctgtactggggc
atataaagtttgcaagtccaatgggcctctctttccagcgatggccgact
aggccatcttttcatacatatgcagctaaagacaagagctctgggggaat
ggttagttcatattgttgttccacctatagggttgcagttccctttagtt
ccttgggtgctttctctacctcctccattgggggccctgtgatcccattc
aatggctgactgtgagcatccactcctgtgtttgctaggccccggcatag
tctcacaagagacacctatatctgggtcctttcagcaaaatcatgctagt
gtatgcaatggtgtcagcatttgaaagctgattatgggatggatccctgg
atatggcaatcaataatgtccatcctttcatcac
gaattcttagcctcgagaaggtgtagatatgaacctagcatggtggtaca
cacacctggaactctggcactcagaaagctgagacaggagtactttgagt
tcaaggtcaacctcagctatataatgagattctgtcttaaagaaataaat
acaaagggaaaaaagtgaggttgatgaagacatcagttggacggaccctc
agtgtgctttcgggaacacacagatacatgcaccacactcacacaaaaca
cacacttacacacacacaagcattgattcctttgtgttaccacattaaaa
caattactttagagaaaggtgcagctatcacccactctctttctagtgtt
ctgactctgttgatctacttgtgagtagagtaggatttttttcccctctt
gttcctctaggaacaagagatgccagttcttctgactcatgactgaccgt
ttttggatttctctcattctcttactttcagttttacaagtttaatattc
tgcttccaaggttctatgtttgatcatcaaactgtgccatagttgaaatg
taatctttaaagcattagacagaaaagggtagataaaaagatcatacaca
atgtaggtcagaaggacccagacctggaggaagatctaggtggagtcacc
agtaaataaacaaacctcttatgtagatccagttagtgacaggaagatac
tctgatttgtggaaagccagcttttatggcactgctttggttttttgttt
gtttgtttgcttgcttgttttgttttgttttgtttttgaaataacttgtt
ttccgaagcttcctctttgggcctagaagtatcgctgagaacccccagga
agcagcatgtctgtcccaggtgagctataacattccagtagatgagtgtc
ttgacctgcagtgagctcacagagcgtctaagcccctaaattcctgttct
tggtgctttctttgagttgtatgagtattcttgacactccttttctaaag
aagaactgaggcactacaaatgttggtgatttgtccatagacttaggtac
acacaccacactctagacaccgcacagcacacactaccactaggatctca
ggagaactgatgtactctgctctaaatataattgccatgttcttatacca
tttcagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_49259681_49260847
seq2: B6Ng01-183A23.g_63_1221

seq1  GAATTCTTAGCCTCGAGAAGGTGTAGATATGAACCTAGCATGGTGGTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCCTCGAGAAGGTGTAGATATGAACCTAGCATGGTGGTACA  50

seq1  CACACCTGGAACTCTGGCACTCAGAAAGCTGAGACAGGAGTACTTTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGGAACTCTGGCACTCAGAAAGCTGAGACAGGAGTACTTTGAGT  100

seq1  TCAAGGTCAACCTCAGCTATATAATGAGATTCTGTCTTAAAGAAATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTCAACCTCAGCTATATAATGAGATTCTGTCTTAAAGAAATAAAT  150

seq1  ACAAAGGGAAAAAAGTGAGGTTGATGAAGACATCAGTTGGACGGACCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGAAAAAAGTGAGGTTGATGAAGACATCAGTTGGACGGACCCTC  200

seq1  AGTGTGCTTTCGGGAACACACAGATACATGCACCACACTCACACAAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTTTCGGGAACACACAGATACATGCACCACACTCACACAAAACA  250

seq1  CACACTTACACACACACAAGCATTGATTCCTTTGTGTTACCACATTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTACACACACACAAGCATTGATTCCTTTGTGTTACCACATTAAAA  300

seq1  CAATTACTTTAGAGAAAGGTGCAGCTATCACCCACTCTCTTTCTAGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACTTTAGAGAAAGGTGCAGCTATCACCCACTCTCTTTCTAGTGTT  350

seq1  CTGACTCTGTTGATCTACTTGTGAGTAGAGTAGGATTTTTTTCCCCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTGTTGATCTACTTGTGAGTAGAGTAGGATTTTTTTCCCCTCTT  400

seq1  GTTCCTCTAGGAACAAGAGATGCCAGTTCTTCTGACTCATGACTGACCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCTAGGAACAAGAGATGCCAGTTCTTCTGACTCATGACTGACCGT  450

seq1  TTTTGGATTTCTCTCATTCTCTTACTTTCAGTTTTACAAGTTTAATATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGATTTCTCTCATTCTCTTACTTTCAGTTTTACAAGTTTAATATTC  500

seq1  TGCTTCCAAGGTTCTATGTTTGATCATCAAACTGTGCCATAGTTGAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCAAGGTTCTATGTTTGATCATCAAACTGTGCCATAGTTGAAATG  550

seq1  TAATCTTTAAAGCATTAGACAGAAAAGGGTAGATAAAAAGATCATACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTTAAAGCATTAGACAGAAAAGGGTAGATAAAAAGATCATACACA  600

seq1  ATGTAGGTCAGAAGGACCCAGACCTGGAGGAAGATCTAGGTGGAGTCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGTCAGAAGGACCCAGACCTGGAGGAAGATCTAGGTGGAGTCACC  650

seq1  AGTAAATAAACAAACCTCTTATGTAGATCCAGTTAGTGACAGGAAGATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATAAACAAACCTCTTATGTAGATCCAGTTAGTGACAGGAAGATAC  700

seq1  TCTGATTTGTGGAAAGCCAGCTTTTATGGCACTGCTTTGGTTTTTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTTGTGGAAAGCCAGCTTTTATGGCACTGCTTTGGTTTTTTGTTT  750

seq1  GTTTGTTTGCTTGCTTGTTTTGTTTTGTTTTGTTTTTGAAATAACTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGCTTGCTTGTTTTGTTTTGTTTTGTTTTTGAAATAACTTGTT  800

seq1  TTCCGAAGCTTCCTCTTTGGGCCTAGAAGTATCGCTGAGAACCCCCAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGAAGCTTCCTCTTTGGGCCTAGAAGTATCGCTGAGAACCCCCAGGA  850

seq1  AGCAGCATGTCTGTCCCAGGTGAGCTATAACATTCCAGTAGATGAGTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCATGTCTGTCCCAGGTGAGCTATAACATTCCAGTAGATGAGTGTC  900

seq1  TTGACCTGCAGTGAGCTCACAGAGCGTCTAAGCCCCTAAATTCCTGTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTGCAGTGAGCTCACAGAGCGTCTAAGCCCCTAAATTCCTGTTCT  950

seq1  TGGTGCTTTCTTTGAGTTGTATGAGTATTCTTGACACTCCTTTTCTTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGTGCTTTCTTTGAGTTGTATGAGTATTCTTGACACTCCTTTTC-TAAA  999

seq1  GAAAGAAACTGAGGCACTACAAAATGTTGGTGATTTGTCCATAGACCTAA  1050
      |||   |||||||||||||| |||||||||||||||||||||||| || |
seq2  GAA--GAACTGAGGCACTAC-AAATGTTGGTGATTTGTCCATAGA-CTTA  1045

seq1  GGTACACACACCACACTCTTAGACACACACACA-CACACACACACACCAA  1099
      |||||||||||||||||| ||||||| | |||| |||||||  ||  | |
seq2  GGTACACACACCACACTC-TAGACAC-CGCACAGCACACAC-TACCACTA  1092

seq1  GGATCTCAGGAGAAACTGAGTGAAACTCTGCTCTAAAATATAAATG-CAT  1148
      |||||||||||| |||||| ||  |||||||||| |||||||| || |||
seq2  GGATCTCAGGAG-AACTGA-TG-TACTCTGCTCT-AAATATAATTGCCAT  1138

seq1  GTTC-TATACCA-TTCAGGGG  1167
      |||| ||||||| ||||||||
seq2  GTTCTTATACCATTTCAGGGG  1159