BAC Information

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BAC

Clone NameB6Ng01-183J05
Chromosome4 (Build37)
Map Location 55,589,707 - 55,720,282
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183J05.bB6Ng01-183J05.g
ACCGA009164GA009165
length1,157643
definitionB6Ng01-183J05.b B6Ng01-183J05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,589,707 - 55,590,870)(55,719,569 - 55,720,282)
sequence
gaattcatgttgtagagggagtaggttccaagatgctggagactggagtg
gggaccttatgaaaacgtgggttggccctttcttcccttctctcttactc
tctgttgctcttctcttatggaataattcagaaatgttgatctcatatgc
tagcctctcagtctagggtttcttagctttcagatgtatcaattaatttg
tctttttatgactgcagcacaaattaggcagatatttgttcacaagtgta
tgtaatatctatctatctatccatccgtccacccaccatccacccaccat
ctacccaccatccatccatccacccacccactcatccatccatccaccca
cccatccatccattcatccatcttatctatctaaatctgcagtgttggcg
tagaactagatctctgtgcatgatagacaactgctctaccactaaactgt
gttctcatcctaccgattttacctttactagtgagattgctaatgtctct
ttaaatccaagcgtcacagtccttaactcaatcaccacaataagattgcc
actgagctgtgccactgagcccacccctactttttatgacagggtcttgt
tggatagacaaaaataatttaaaaaactaaaacaaaaaaaaaccactacc
aacaaaaaaacctttgtgcatctttcactctaagtactaagataacaaac
acatgcaacatttacctccgtaatggtttgactgaagcaaattatctcag
tcattcatgaagccacccattcattcccttctccatccataaactatcac
tccccatgcccattccctgctttggttaattcatctctccatccacccat
gtattcactcattcactctttgagcacatttaagtacttaccttttgggg
tgttaaaatagctcagtgggtgaaaggggcttgctttcaagactcatgac
ctgggtttcttctatctctgcagcccacatgttggaaaggaggaagaaca
actcctacaagtgtcctctgactccaatatttcactgtggtggcctccac
atataacacacatggataaaatagttgcagttaaattttactttctgatg
ttgatgtttctcaaatgttggtggtttgttatgctatgattactatgcag
tctcttc

gaattctaaggctccaggtactccagtggaacaaataaaccatcaagaaa
tggattcatctcaagcaggaaatgaaaatgactagagttccagtggttag
tatgtgtctctcttgtctacatagtcttgggcaggagttgactaaacaac
aattgatctaaattaattttaatctctgatattagaaggtgttgaatact
tcacatgagaaatgtagtgattttgcatggatattttacccgttccttgg
tggcgattgagtctttcctgtgaagttggactcaaattctcttcctaaga
tggccactctggagaaagaaacaatttttccagaattagtgtagatcagt
acctttgagttggatagaaacaacttgccatacccaatgtcatcagtaca
agggaaagacagaaagcatttagggtgtaaactaaagaggaaattccgac
attttgggtgtgtggtctcagcacttaggagacagatgaatgaggattaa
gagcgaaggttatttgcagtgacaattgagtttgaaaaaagcttgaacta
tgtgagactctgaaggtaagaatgaaaaaagaaagagagagggagagaga
aagagaggagagagaaggaaggaaaggaaggaaggaaggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_55589707_55590870
seq2: B6Ng01-183J05.b_47_1203

seq1  GAATTCATGTTGTAGAGGGAGTAGGTTCCAAGATGCTGGAGACTGGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTGTAGAGGGAGTAGGTTCCAAGATGCTGGAGACTGGAGTG  50

seq1  GGGACCTTATGAAAACGTGGGTTGGCCCTTTCTTCCCTTCTCTCTTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTTATGAAAACGTGGGTTGGCCCTTTCTTCCCTTCTCTCTTACTC  100

seq1  TCTGTTGCTCTTCTCTTATGGAATAATTCAGAAATGTTGATCTCATATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGCTCTTCTCTTATGGAATAATTCAGAAATGTTGATCTCATATGC  150

seq1  TAGCCTCTCAGTCTAGGGTTTCTTAGCTTTCAGATGTATCAATTAATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCTCAGTCTAGGGTTTCTTAGCTTTCAGATGTATCAATTAATTTG  200

seq1  TCTTTTTATGACTGCAGCACAAATTAGGCAGATATTTGTTCACAAGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTATGACTGCAGCACAAATTAGGCAGATATTTGTTCACAAGTGTA  250

seq1  TGTAATATCTATCTATCTATCCATCCGTCCACCCACCATCCACCCACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATCTATCTATCTATCCATCCGTCCACCCACCATCCACCCACCAT  300

seq1  CTACCCACCATCCATCCATCCACCCACCCACTCATCCATCCATCCACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCACCATCCATCCATCCACCCACCCACTCATCCATCCATCCACCCA  350

seq1  CCCATCCATCCATTCATCCATCTTATCTATCTAAATCTGCAGTGTTGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCATCCATTCATCCATCTTATCTATCTAAATCTGCAGTGTTGGCG  400

seq1  TAGAACTAGATCTCTGTGCATGATAGACAACTGCTCTACCACTAAACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTAGATCTCTGTGCATGATAGACAACTGCTCTACCACTAAACTGT  450

seq1  GTTCTCATCCTACCGATTTTACCTTTACTAGTGAGATTGCTAATGTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCATCCTACCGATTTTACCTTTACTAGTGAGATTGCTAATGTCTCT  500

seq1  TTAAATCCAAGCGTCACAGTCCTTAACTCAATCACCACAATAAGATTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCCAAGCGTCACAGTCCTTAACTCAATCACCACAATAAGATTGCC  550

seq1  ACTGAGCTGTGCCACTGAGCCCACCCCTACTTTTTATGACAGGGTCTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCTGTGCCACTGAGCCCACCCCTACTTTTTATGACAGGGTCTTGT  600

seq1  TGGATAGACAAAAATAATTTAAAAAACTAAAACAAAAAAAAACCACTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGACAAAAATAATTTAAAAAACTAAAACAAAAAAAAACCACTACC  650

seq1  AACAAAAAAACCTTTGTGCATCTTTCACTCTAAGTACTAAGATAACAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAACCTTTGTGCATCTTTCACTCTAAGTACTAAGATAACAAAC  700

seq1  ACATGCAACATTTACCTCCGTAATGGTTTGACTGAAGCAAATTATCTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAACATTTACCTCCGTAATGGTTTGACTGAAGCAAATTATCTCAG  750

seq1  TCATTCATGAAGCCACCCATTCATTCCCTTCTCCATCCATAAACTATCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATGAAGCCACCCATTCATTCCCTTCTCCATCCATAAACTATCAC  800

seq1  TCCCCATGCCCATTCCCTGC-TTGGTTAATTCATCTCTCCATCCACCCAT  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCCCCATGCCCATTCCCTGCTTTGGTTAATTCATCTCTCCATCCACCCAT  850

seq1  GTATTCACTCATTCACTCTTTGAGCACATTTAAGTACTTACC-TTTGGGG  898
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTATTCACTCATTCACTCTTTGAGCACATTTAAGTACTTACCTTTTGGGG  900

seq1  TGTTAAAATAGCTCAGTGGGTG-AAGGGGCTTGCTTTCAAGACTCATGAC  947
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTTAAAATAGCTCAGTGGGTGAAAGGGGCTTGCTTTCAAGACTCATGAC  950

seq1  CTGGGTTTCTTCTATCTCTGCAGCCCACATGTTGG-AAGGAGGAGAACCA  996
      ||||||||||||||||||||||||||||||||||| ||||||||  | ||
seq2  CTGGGTTTCTTCTATCTCTGCAGCCCACATGTTGGAAAGGAGGAAGAACA  1000

seq1  ACTCCTACAAGTTGTCCTCTGACTTCCAATA-TTCACTGTGGTG--CT-C  1042
      ||||||||||| ||||||||||| ||||||| ||||||||||||  || |
seq2  ACTCCTACAAG-TGTCCTCTGAC-TCCAATATTTCACTGTGGTGGCCTCC  1048

seq1  ACATAT-ACACACATGGATAAAATAGGTGCAGTAAATTTTTACTTTTCTA  1091
      |||||| ||||||||||||||||||| |||||| || |||||| ||||| 
seq2  ACATATAACACACATGGATAAAATAGTTGCAGTTAAATTTTAC-TTTCT-  1096

seq1  AATGTTTGGTGTTTTCTCAAAAATGTTTGTTGTTTTTGTTATGCTATGAT  1141
       ||| ||| || ||||||  ||||||| || |  ||||||||||||||| 
seq2  GATG-TTGATG-TTTCTC--AAATGTTGGTGG--TTTGTTATGCTATGA-  1139

seq1  TTACTAGTGGCAGTCCTTTCTTC  1164
      ||||||   ||||||   |||||
seq2  TTACTA--TGCAGTC---TCTTC  1157


seq1: chr4_55719569_55720282
seq2: B6Ng01-183J05.g_69_711 (reverse)

seq1  CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  100
                        |||||||||||||||||||   ||||||||||
seq2  ------------------CCTTCCTTCCTTCCTTCCT---TTCCTTCCTT  29

seq1  CTCTCTCCTCTCTTTCTCTCTCCCTCTCTCTTTCTTTTTTCATTCTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCTCTCTTTCTCTCTCCCTCTCTCTTTCTTTTTTCATTCTTACC  79

seq1  TTCAGAGTCTCACATAGTTCAAGCTTTTTTCAAACTCAATTGTCACTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTCTCACATAGTTCAAGCTTTTTTCAAACTCAATTGTCACTGCA  129

seq1  AATAACCTTCGCTCTTAATCCTCATTCATCTGTCTCCTAAGTGCTGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCTTCGCTCTTAATCCTCATTCATCTGTCTCCTAAGTGCTGAGAC  179

seq1  CACACACCCAAAATGTCGGAATTTCCTCTTTAGTTTACACCCTAAATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCCAAAATGTCGGAATTTCCTCTTTAGTTTACACCCTAAATGCT  229

seq1  TTCTGTCTTTCCCTTGTACTGATGACATTGGGTATGGCAAGTTGTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTTTCCCTTGTACTGATGACATTGGGTATGGCAAGTTGTTTCTA  279

seq1  TCCAACTCAAAGGTACTGATCTACACTAATTCTGGAAAAATTGTTTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTCAAAGGTACTGATCTACACTAATTCTGGAAAAATTGTTTCTTT  329

seq1  CTCCAGAGTGGCCATCTTAGGAAGAGAATTTGAGTCCAACTTCACAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGTGGCCATCTTAGGAAGAGAATTTGAGTCCAACTTCACAGGAA  379

seq1  AGACTCAATCGCCACCAAGGAACGGGTAAAATATCCATGCAAAATCACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAATCGCCACCAAGGAACGGGTAAAATATCCATGCAAAATCACTA  429

seq1  CATTTCTCATGTGAAGTATTCAACACCTTCTAATATCAGAGATTAAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCATGTGAAGTATTCAACACCTTCTAATATCAGAGATTAAAATT  479

seq1  AATTTAGATCAATTGTTGTTTAGTCAACTCCTGCCCAAGACTATGTAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGATCAATTGTTGTTTAGTCAACTCCTGCCCAAGACTATGTAGAC  529

seq1  AAGAGAGACACATACTAACCACTGGAACTCTAGTCATTTTCATTTCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGACACATACTAACCACTGGAACTCTAGTCATTTTCATTTCCTGC  579

seq1  TTGAGATGAATCCATTTCTTGATGGTTTATTTGTTCCACTGGAGTACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATGAATCCATTTCTTGATGGTTTATTTGTTCCACTGGAGTACCTG  629

seq1  GAGCCTTAGAATTC  714
      ||||||||||||||
seq2  GAGCCTTAGAATTC  643


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