BAC Information

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BAC

Clone NameB6Ng01-183J20
Chromosome4 (Build37)
Map Location 66,927,066 - 66,927,910
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183J20.bB6Ng01-183J20.g
ACCGA009194GA009195
length8471,184
definitionB6Ng01-183J20.b B6Ng01-183J20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttaccaggtactgtttttagtgatgtgaataaatatctgatgga
taaaaacctgctaggatggatcaatgtaaaaatgaatacttaataaggaa
tttagtgaggttaggagttagcatcagaataatgttaatttagaggtaag
aagtcatgcatttcatttcagaagaagctgttaaaagtgtttgtggtgta
gcccactacagatatgagattattaaataaatgttagattaaatttgaaa
atagtttgcaaaaattttcagtaacgtgggattgagaagttcttacaaat
gaatgacaaaatgggcattaataaataaacagaatgatgaagaagacaaa
taccataattttagtgatcaaaccatttgtatgtacagtaatgagtgaaa
aaaatcagaaatcccgacctttatatacaaatctctctaaagtgatataa
tgtttggatagagtgaaattatgtataaaaaaatctcacacttgtttaga
aatggtacagtttctgaaaatcaatatatgaatcattcactaattacatg
catcttctttgctaactacgaaaattttaagctaaattaactatccacag
aagacaggaattatcagctgtctaagaatgaggcaaaggtgtatcttttt
gcagctaacaaatccttatataatttcactgtgtctgccagtattaagac
acctctctgtggttttgttgttgttgttgttgttgttgttgttttgtttt
gttttgttttgttagtgatatctccagcagtttttttttttttactttat
ttaatttaaggattgttttagctattctggtttttgtggtgtgtgtg

gaattctcacctgaggaatacagaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccactcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtgaagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacatatcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaatagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttgtgaaattcctagccaa
atagatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactacgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggtccatgtagagacttccatatccagggatccaccccataatc
agcatccaaacactgacactatttcatacactagcaagattttatcgaaa
ggacccagatgtagctgtccttgtgagactataccggggcctagcaaaca
cagaagtggatgctcacagtcagctaatggatgggatcacagggctccca
atggaggagctagagaaagtagccaaggagctaaagggatctgcaaccct
ataggcggaacaacattatgactaaccagttacccccggagctctgactc
tagctgcataatgtatcaaaggatgctagtccgcatcacttgaaaggaag
tcaatggacagccaaccttatatggccagtacagaatctcaggcctaaat
ggtaatgggctgctaagggggtactggctcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66927066_66927910
seq2: B6Ng01-183J20.b_45_891 (reverse)

seq1  CACACACACCACAAAAA-CAGAATAGCTAAAACAATCC-TAAATTAAATA  48
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  CACACACACCACAAAAACCAGAATAGCTAAAACAATCCTTAAATTAAATA  50

seq1  AAGTAAAAAAAAAAAAACTGCTGGAGATATCACTAACAAAACAAAACAAA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAAAAAAAAAAACTGCTGGAGATATCACTAACAAAACAAAACAAA  100

seq1  ACAAAACAACAACAACAACAACAACAACAACAAAACCACAGAGAGGTGTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAACAACAACAACAACAACAACAACAAAACCACAGAGAGGTGTC  150

seq1  TTAATACTGGCAGACACAGTGAAATTATATAAGGATTTGTTAGCTGCAAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACTGGCAGACACAGTGAAATTATATAAGGATTTGTTAGCTGCAAA  200

seq1  AAGATACACCTTTGCCTCATTCTTAGACAGCTGATAATTCCTGTCTTCTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACACCTTTGCCTCATTCTTAGACAGCTGATAATTCCTGTCTTCTG  250

seq1  TGGATAGTTAATTTAGCTTAAAATTTTCGTAGTTAGCAAAGAAGATGCAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGTTAATTTAGCTTAAAATTTTCGTAGTTAGCAAAGAAGATGCAT  300

seq1  GTAATTAGTGAATGATTCATATATTGATTTTCAGAAACTGTACCATTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAGTGAATGATTCATATATTGATTTTCAGAAACTGTACCATTTCT  350

seq1  AAACAAGTGTGAGATTTTTTTATACATAATTTCACTCTATCCAAACATTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTGTGAGATTTTTTTATACATAATTTCACTCTATCCAAACATTA  400

seq1  TATCACTTTAGAGAGATTTGTATATAAAGGTCGGGATTTCTGATTTTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTTTAGAGAGATTTGTATATAAAGGTCGGGATTTCTGATTTTTTT  450

seq1  CACTCATTACTGTACATACAAATGGTTTGATCACTAAAATTATGGTATTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATTACTGTACATACAAATGGTTTGATCACTAAAATTATGGTATTT  500

seq1  GTCTTCTTCATCATTCTGTTTATTTATTAATGCCCATTTTGTCATTCATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTCATCATTCTGTTTATTTATTAATGCCCATTTTGTCATTCATT  550

seq1  TGTAAGAACTTCTCAATCCCACGTTACTGAAAATTTTTGCAAACTATTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAACTTCTCAATCCCACGTTACTGAAAATTTTTGCAAACTATTTT  600

seq1  CAAATTTAATCTAACATTTATTTAATAATCTCATATCTGTAGTGGGCTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTAATCTAACATTTATTTAATAATCTCATATCTGTAGTGGGCTAC  650

seq1  ACCACAAACACTTTTAACAGCTTCTTCTGAAATGAAATGCATGACTTCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAACACTTTTAACAGCTTCTTCTGAAATGAAATGCATGACTTCTT  700

seq1  ACCTCTAAATTAACATTATTCTGATGCTAACTCCTAACCTCACTAAATTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAAATTAACATTATTCTGATGCTAACTCCTAACCTCACTAAATTC  750

seq1  CTTATTAAGTATTCATTTTTACATTGATCCATCCTAGCAGGTTTTTATCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAAGTATTCATTTTTACATTGATCCATCCTAGCAGGTTTTTATCC  800

seq1  ATCAGATATTTATTCACATCACTAAAAACAGTACCTGGTAAGAATTC  845
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATATTTATTCACATCACTAAAAACAGTACCTGGTAAGAATTC  847


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