BAC Information

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BAC

Clone NameB6Ng01-183M05
Chromosome4 (Build37)
Map Location 126,938,972 - 127,087,871
singlet/doubletdoublet
Overlap geneGja4, Gjb3, Gjb4, Gjb5, LOC667296
Upstream geneTrappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320, Sfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3, BC003266
Downstream geneLOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183M05.bB6Ng01-183M05.g
ACCGA009307GA009308
length9671,169
definitionB6Ng01-183M05.b B6Ng01-183M05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,086,905 - 127,087,871)(126,938,972 - 126,940,127)
sequence
gaattcaccaaacttgaatccttccttcctgtctcctccaagtccactgt
aaacacagtcacccctctgtgacagctgaagtggcagccacacagcactc
ttggggtgctggcatgcctgttgggtggtgacagtgtgtatttcccagag
ggtgagattctcctatatggagactgctgtcccaccccatggtaggtagc
accaggctgggctgctgctgtcccaccctgtggaaggtagtgccaggctg
ggctgctgctgtcccaccccgtggaaggtagcgccaggctgggctgctgc
tgtcccaccctgtggaaggtagtgccaggctgggctgcctgcctcccctt
ccccagcaatgacactttgctcgagtgtttgcttcattactatctgactc
acagaaggtttttcttgcgatgtattccaggctaattttagaaatttgtt
ttcaccttctgacattgattcctggggcagcttgcaagctgcctgagaca
gaaatcaatggtgacagcttcggagtgggctctgttcttcattaacccag
cactctaagcagtcccaaccctgtctcctccctcagggccagccctgaag
aggaaagggaaaagaaggggcagttgggatgtttcttttggtgcccttaa
cctttttctcttccttctcttccctactctttcgccaacaagtgtgaaga
tggaccgagaggaaggagggtgagatttactcacctttccatatccaagc
acttggccagttagttcatagcatggccccacttaaatttgcctttatca
ctccgaggtgggagttgcctatgtttgaaacagacacaaagaaatgagag
acaaacccagtatcacatggctcctggctccaacagaggagagggatggg
agcccaccccaaccctgccttctcccaccatgtggaaagctaagtgtgag
agtttgagagtgtgccc
gaattcactgaggccatggcttaaggacgaatgacagtgtccgaggaatg
ctctgtacaggacacagctttactcgtgaaggtgctggccctctgggagc
aggtctgctgactccggtggtttcttccacccaaaagagaccttagggtg
ggccggaaggctctgggagttcattatccctgtgttctctggggtgaagg
aacagtcagtcgacaggcctcaggcaccgtctcatccttcccctagtttt
atcagaacgtagacgcctttccgctcgctttcagcctgggaccaccagct
ttcccagtcagagatgagatggttttgaccttagttgtagccgggccctg
caaccctctgtatactctgctaggtagggcatgagctgtgaaaacggctc
aggggaaccaaatatcgcttatattattttttccagaaattttatctgtc
tgggttggttcaggctcacattctagtaaagatgtttggctcatgtgttt
tccgggaagagctgaggccccgtggggaaatgatgcagatgcatgctggg
agtctgcgttccttgcctttcttccctgtaggtcttcactgttttacaca
cagccttactaggtgacagcaaagtcatttcaggggcttttttggatagg
gtattctccttcctgggccacccactaccttctgtctttctgtcccctgt
cacccactaccttctgtccttctggagaggttgaggcagaagaatcccag
aaaagcagaaaaggaaaactgttcgcctggcttcttcaggctatgctctt
caagtgtctgggctggacatttcatatctcttttggtcatctggagagcc
ttgcctggccttgacaaggacaccgaggctaagagggccgactaattctc
aaatagcacaagatgtcccgcggcgaagctgcctgtccccttccaacttt
actgtgccctttgtctctcttcgcttaagacagcaggaaggtggaggggt
ggaagaagttagagccagcctgctcaacctctgcctccttcctggtctcc
tagaagacctcttttgttccctattcctgacacaggctcaaaaggatctc
aagggtccaatgtgtctataaagaactgatgcattgtcatctttggacct
gttccccattcccatacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_127086905_127087871
seq2: B6Ng01-183M05.b_43_1009 (reverse)

seq1  GGGCACACTCTCAAACTCTCACACTTAGCTTTCCACATGGTGGGAGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACACTCTCAAACTCTCACACTTAGCTTTCCACATGGTGGGAGAAGG  50

seq1  CAGGGTTGGGGTGGGCTCCCATCCCTCTCCTCTGTTGGAGCCAGGAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGGGGTGGGCTCCCATCCCTCTCCTCTGTTGGAGCCAGGAGCCA  100

seq1  TGTGATACTGGGTTTGTCTCTCATTTCTTTGTGTCTGTTTCAAACATAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATACTGGGTTTGTCTCTCATTTCTTTGTGTCTGTTTCAAACATAGG  150

seq1  CAACTCCCACCTCGGAGTGATAAAGGCAAATTTAAGTGGGGCCATGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCCACCTCGGAGTGATAAAGGCAAATTTAAGTGGGGCCATGCTAT  200

seq1  GAACTAACTGGCCAAGTGCTTGGATATGGAAAGGTGAGTAAATCTCACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAACTGGCCAAGTGCTTGGATATGGAAAGGTGAGTAAATCTCACCC  250

seq1  TCCTTCCTCTCGGTCCATCTTCACACTTGTTGGCGAAAGAGTAGGGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTCTCGGTCCATCTTCACACTTGTTGGCGAAAGAGTAGGGAAGA  300

seq1  GAAGGAAGAGAAAAAGGTTAAGGGCACCAAAAGAAACATCCCAACTGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGAGAAAAAGGTTAAGGGCACCAAAAGAAACATCCCAACTGCCC  350

seq1  CTTCTTTTCCCTTTCCTCTTCAGGGCTGGCCCTGAGGGAGGAGACAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTCCCTTTCCTCTTCAGGGCTGGCCCTGAGGGAGGAGACAGGGT  400

seq1  TGGGACTGCTTAGAGTGCTGGGTTAATGAAGAACAGAGCCCACTCCGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTGCTTAGAGTGCTGGGTTAATGAAGAACAGAGCCCACTCCGAAG  450

seq1  CTGTCACCATTGATTTCTGTCTCAGGCAGCTTGCAAGCTGCCCCAGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCATTGATTTCTGTCTCAGGCAGCTTGCAAGCTGCCCCAGGAAT  500

seq1  CAATGTCAGAAGGTGAAAACAAATTTCTAAAATTAGCCTGGAATACATCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCAGAAGGTGAAAACAAATTTCTAAAATTAGCCTGGAATACATCG  550

seq1  CAAGAAAAACCTTCTGTGAGTCAGATAGTAATGAAGCAAACACTCGAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAACCTTCTGTGAGTCAGATAGTAATGAAGCAAACACTCGAGCA  600

seq1  AAGTGTCATTGCTGGGGAAGGGGAGGCAGGCAGCCCAGCCTGGCACTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCATTGCTGGGGAAGGGGAGGCAGGCAGCCCAGCCTGGCACTACC  650

seq1  TTCCACAGGGTGGGACAGCAGCAGCCCAGCCTGGCGCTACCTTCCACGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGGGTGGGACAGCAGCAGCCCAGCCTGGCGCTACCTTCCACGGG  700

seq1  GTGGGACAGCAGCAGCCCAGCCTGGCACTACCTTCCACAGGGTGGGACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACAGCAGCAGCCCAGCCTGGCACTACCTTCCACAGGGTGGGACAG  750

seq1  CAGCAGCCCAGCCTGGTGCTACCTACCATGGGGTGGGACAGCAGTCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCCAGCCTGGTGCTACCTACCATGGGGTGGGACAGCAGTCTCCA  800

seq1  TATAGGAGAATCTCACCCTCTGGGAAATACACACTGTCACCACCCAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGAGAATCTCACCCTCTGGGAAATACACACTGTCACCACCCAACAG  850

seq1  GCATGCCAGCACCCCAAGAGTGCTGTGTGGCTGCCACTTCAGCTGTCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCAGCACCCCAAGAGTGCTGTGTGGCTGCCACTTCAGCTGTCACA  900

seq1  GAGGGGTGACTGTGTTTACAGTGGACTTGGAGGAGACAGGAAGGAAGGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTGACTGTGTTTACAGTGGACTTGGAGGAGACAGGAAGGAAGGAT  950

seq1  TCAAGTTTGGTGAATTC  967
      |||||||||||||||||
seq2  TCAAGTTTGGTGAATTC  967

seq1: chr4_126938972_126940127
seq2: B6Ng01-183M05.g_64_1232

seq1  GAATTCACTGAGGCCATGGCTTAAGGACGAATGACAGTGTCCGAGGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAGGCCATGGCTTAAGGACGAATGACAGTGTCCGAGGAATG  50

seq1  CTCTGTACAGGACACAGCTTTACTCGTGAAGGTGCTGGCCCTCTGGGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTACAGGACACAGCTTTACTCGTGAAGGTGCTGGCCCTCTGGGAGC  100

seq1  AGGTCTGCTGACTCCGGTGGTTTCTTCCACCCAAAAGAGACCTTAGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGCTGACTCCGGTGGTTTCTTCCACCCAAAAGAGACCTTAGGGTG  150

seq1  GGCCGGAAGGCTCTGGGAGTTCATTATCCCTGTGTTCTCTGGGGTGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGAAGGCTCTGGGAGTTCATTATCCCTGTGTTCTCTGGGGTGAAGG  200

seq1  AACAGTCAGTCGACAGGCCTCAGGCACCGTCTCATCCTTCCCCTAGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCAGTCGACAGGCCTCAGGCACCGTCTCATCCTTCCCCTAGTTTT  250

seq1  ATCAGAACGTAGACGCCTTTCCGCTCGCTTTCAGCCTGGGACCACCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAACGTAGACGCCTTTCCGCTCGCTTTCAGCCTGGGACCACCAGCT  300

seq1  TTCCCAGTCAGAGATGAGATGGTTTTGACCTTAGTTGTAGCCGGGCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTCAGAGATGAGATGGTTTTGACCTTAGTTGTAGCCGGGCCCTG  350

seq1  CAACCCTCTGTATACTCTGCTAGGTAGGGCATGAGCTGTGAAAACGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTCTGTATACTCTGCTAGGTAGGGCATGAGCTGTGAAAACGGCTC  400

seq1  AGGGGAACCAAATATCGCTTATATTATTTTTTCCAGAAATTTTATCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAACCAAATATCGCTTATATTATTTTTTCCAGAAATTTTATCTGTC  450

seq1  TGGGTTGGTTCAGGCTCACATTCTAGTAAAGATGTTTGGCTCATGTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGGTTCAGGCTCACATTCTAGTAAAGATGTTTGGCTCATGTGTTT  500

seq1  TCCGGGAAGAGCTGAGGCCCCGTGGGGAAATGATGCAGATGCATGCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGAAGAGCTGAGGCCCCGTGGGGAAATGATGCAGATGCATGCTGGG  550

seq1  AGTCTGCGTTCCTTGCCTTTCTTCCCTGTAGGTCTTCACTGTTTTACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCGTTCCTTGCCTTTCTTCCCTGTAGGTCTTCACTGTTTTACACA  600

seq1  CAGCCTTACTAGGTGACAGCAAAGTCATTTCAGGGGCTTTTTTGGATAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTACTAGGTGACAGCAAAGTCATTTCAGGGGCTTTTTTGGATAGG  650

seq1  GTATTCTCCTTCCTGGGCCACCCACTACCTTCTGTCTTTCTGTCCCCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTCCTTCCTGGGCCACCCACTACCTTCTGTCTTTCTGTCCCCTGT  700

seq1  CACCCACTACCTTCTGTCCTTCTGGAGAGGTTGAGGCAGAAGAATCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTACCTTCTGTCCTTCTGGAGAGGTTGAGGCAGAAGAATCCCAG  750

seq1  AAAAGCAGAAAAGGAAAACTGTTCGCCTGGCTTCTTCAGGCTATGCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGAAAAGGAAAACTGTTCGCCTGGCTTCTTCAGGCTATGCTCTT  800

seq1  CAAGTGTCTGGGCTGGACATTTCATATCTCTTTTGGTCATCTGGAGAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTCTGGGCTGGACATTTCATATCTCTTTTGGTCATCTGGAGAGCC  850

seq1  TTGCCTGGCCTTGACAAGGACACCGAGGCTAAGA-GGCCGACTAATTCTC  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGCCTGGCCTTGACAAGGACACCGAGGCTAAGAGGGCCGACTAATTCTC  900

seq1  AAATAGCACAAGATGTCCCGCGGCGAAGCTGCCTGTCCCCTTCCAACTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCACAAGATGTCCCGCGGCGAAGCTGCCTGTCCCCTTCCAACTTT  950

seq1  ACTGTGCCCTTTGTCTCTCTTCGCCTTAGACAGCAGG-AGGTGGA-GGGT  997
      |||||||||||||||||||||||| | |||||||||| ||||||| ||||
seq2  ACTGTGCCCTTTGTCTCTCTTCGCTTAAGACAGCAGGAAGGTGGAGGGGT  1000

seq1  G--AGAAGTTAGAGCCAGCCTGCTCCA-CTCTGCCTCCTTCCT-GTCT-C  1042
      |  |||||||||||||||||||||| | ||||||||||||||| |||| |
seq2  GGAAGAAGTTAGAGCCAGCCTGCTCAACCTCTGCCTCCTTCCTGGTCTCC  1050

seq1  TAG-AGACCTCTTTGTTCCCCTATTCCTG-CACAGGCTCAAAGGGTTCTC  1090
      ||| ||||||||||  | ||||||||||| |||||||||||| || ||||
seq2  TAGAAGACCTCTTTTGTTCCCTATTCCTGACACAGGCTCAAAAGGATCTC  1100

seq1  -AGGGTCCAGTG-GCCTAT-AAGGACTGAATGGATTGTCACCTTTTGACC  1137
       |||||||| || | |||| ||| |||| ||| ||||||| |||| ||||
seq2  AAGGGTCCAATGTGTCTATAAAGAACTG-ATGCATTGTCATCTTTGGACC  1149

seq1  TG-TCCCCTTTCCCATACCA  1156
      || ||||| |||||||||||
seq2  TGTTCCCCATTCCCATACCA  1169