BAC Information

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BAC

Clone NameB6Ng01-184H20
Chromosome4 (Build37)
Map Location 147,185,766 - 147,329,707
singlet/doubletdoublet
Overlap geneLOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik
Upstream geneLOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677
Downstream geneNppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184H20.bB6Ng01-184H20.g
ACCGA009851GA009852
length9061,100
definitionB6Ng01-184H20.b B6Ng01-184H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,329,146 - 147,329,707)(147,185,766 - 147,186,677)
sequence
gaattccattttagacttgtccaagaaaaagtagaagtcattagctctca
ggaaattattctttggggctggagaaatagcttagtggttaggagcgctt
taggagggctggagtttggctccccagcacccgtgccaggtggctctcaa
ctgcctgcaactccggatccaggagatccaaaccactcttctggtttcca
tggatccacacacacattctccatggatacacacacacacacactccatg
gatacacacacacacactccatggatatacacatacacacacacacacac
tccatggatacacacacactccatggatacacacacacacacactccatg
gatatacacatacacacacacacacacacactccatggatacacacacac
acacactccatggatacacacacacacacactccatggatacacacacac
acactccatggatatacacatacacacacacacacacactccatggatat
acacacactccatggatccacacatacacactccatggatccacacacac
tccatggatacacacacacacactccatggatatacacatacacactcca
tggatacacacacactccatggatacacacacacacacacacacacacac
acactccatggatacacacacacacactccatggatacacacacacacac
actccatggatacacacacacacacactccatggatacacacacacacac
actccatggatacacaacacacacacctccatggatatacacatacacac
acacacacaacactccatgggaatataacacacactccatggatccacac
atacacactccatggattccacacacactccatggatacacacacacaca
cacttc
gaattctctacttcattttccctgtgtcttccaccctctgtgtgtctgtt
cagttagtttaaatctgtaacttcctgaaggctgcttgtatagctctccc
tttctgtctgccttttgtctccatgttggtgtctatctgtgtaatctgtt
gtctatttgtatctctctgactgaccttgagagagagctttggagtgctt
ctagaacatcaagggaaccatcacatggggaaagaatgggatagtgaaca
gtaatcttttataaaggattaggtaactggctccaagtggtcaagtggac
aacaaacatttataaatatgacttttatcaaaaaatacccataactgtat
atgcatttttgaactatgctttaagcctctgcatttcatgctttcatcaa
gtgacactcatgcagtttctgagcaggacttgaaaaagtacataaattgc
cattgtatctatgcatcaagttaggttttaaaagttgatatcaagagaag
tccaaggaaaataatgtgagtttttacattgttctttgaaaagtgtgcta
aaccctcagtaggatcacagctttaaaacttaaatttcttcaagttgcct
taattctggttgtgaggtccaggaaaattccccatttattagaagttaag
atgttttatataatacattgtcacagttatggttctgccaatgcatagga
aagcaccatggagcaagactccatggagttataatgggtgtagtcttagt
aagatgtttcgcaaataaaaaaaaaaaaaaatttaaaggtaccagcttat
aagtgtatgaatgtgtttcaaatgaagttctgaatttctgaaagaagatg
ggaatttcagttgatcttgttcttttccactgtgttacatcaagaaagtt
gctagccaaagtgtttcattaaaaattactcaaagaatggcagaccatct
gacaacaaaaggggtttgctttttaccaaactgacaattaagtctttcat
tgcctaaggacagggctgactcaaatcactgtattatgaaacgtcaaacc
tggtggcgtgcagaaccattgactcttatgttccagtgtcctccgttatg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147329146_147329707
seq2: B6Ng01-184H20.b_43_604 (reverse)

seq1  TGTATCCATGGAGTGTGTGTGGATCCATGGAGTGTGTATGTGTGGATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCATGGAGTGTGTGTGGATCCATGGAGTGTGTATGTGTGGATCCA  50

seq1  TGGAGTGTGTGTATATCCATGGAGTGTGTGTGTGTGTGTGTATGTGTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGTGTGTATATCCATGGAGTGTGTGTGTGTGTGTGTATGTGTATA  100

seq1  TCCATGGAGTGTGTGTGTGTGTATCCATGGAGTGTGTGTGTGTGTGTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGAGTGTGTGTGTGTGTATCCATGGAGTGTGTGTGTGTGTGTATC  150

seq1  CATGGAGTGTGTGTGTGTGTGTATCCATGGAGTGTGTGTGTGTGTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGTGTGTGTGTGTGTGTATCCATGGAGTGTGTGTGTGTGTGTGTG  200

seq1  TATGTGTATATCCATGGAGTGTGTGTGTGTGTGTATCCATGGAGTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTATATCCATGGAGTGTGTGTGTGTGTGTATCCATGGAGTGTGTG  250

seq1  TGTATCCATGGAGTGTGTGTGTGTGTGTATGTGTATATCCATGGAGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCATGGAGTGTGTGTGTGTGTGTATGTGTATATCCATGGAGTGTG  300

seq1  TGTGTGTGTATCCATGGAGTGTGTGTGTGTGTGTATCCATGGAGAATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATCCATGGAGTGTGTGTGTGTGTGTATCCATGGAGAATGTG  350

seq1  TGTGTGGATCCATGGAAACCAGAAGAGTGGTTTGGATCTCCTGGATCCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGATCCATGGAAACCAGAAGAGTGGTTTGGATCTCCTGGATCCGG  400

seq1  AGTTGCAGGCAGTTGAGAGCCACCTGGCACGGGTGCTGGGGAGCCAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCAGGCAGTTGAGAGCCACCTGGCACGGGTGCTGGGGAGCCAAACT  450

seq1  CCAGCCCTCCTAAAGCGCTCCTAACCACTAAGCTATTTCTCCAGCCCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTCCTAAAGCGCTCCTAACCACTAAGCTATTTCTCCAGCCCCAA  500

seq1  AGAATAATTTCCTGAGAGCTAATGACTTCTACTTTTTCTTGGACAAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATTTCCTGAGAGCTAATGACTTCTACTTTTTCTTGGACAAGTCT  550

seq1  AAAATGGAATTC  562
      ||||||||||||
seq2  AAAATGGAATTC  562

seq1: chr4_147185766_147186677
seq2: B6Ng01-184H20.g_240_1163

seq1  TTGAGAGAGAGCTTTGGAGTGCTTCTAGAACATCAAGGGAACCATCACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGAGAGCTTTGGAGTGCTTCTAGAACATCAAGGGAACCATCACAT  50

seq1  GGGGAAAGAATGGGATAGTGAACAGTAATCTTTTATAAAGGATTAGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAGAATGGGATAGTGAACAGTAATCTTTTATAAAGGATTAGGTAA  100

seq1  CTGGCTCCAAGTGGTCAAGTGGACAACAAACATTTATAAATATGACTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCCAAGTGGTCAAGTGGACAACAAACATTTATAAATATGACTTTT  150

seq1  ATCAAAAAATACCCATAACTGTATATGCATTTTTGAACTATGCTTTAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAAATACCCATAACTGTATATGCATTTTTGAACTATGCTTTAAGC  200

seq1  CTCTGCATTTCATGCTTTCATCAAGTGACACTCATGCAGTTTCTGAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCATTTCATGCTTTCATCAAGTGACACTCATGCAGTTTCTGAGCAG  250

seq1  GACTTGAAAAAGTACATAAATTGCCATTGTATCTATGCATCAAGTTAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAAAAAGTACATAAATTGCCATTGTATCTATGCATCAAGTTAGGT  300

seq1  TTTAAAAGTTGATATCAAGAGAAGTCCAAGGAAAATAATGTGAGTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGTTGATATCAAGAGAAGTCCAAGGAAAATAATGTGAGTTTTTA  350

seq1  CATTGTTCTTTGAAAAGTGTGCTAAACCCTCAGTAGGATCACAGCTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCTTTGAAAAGTGTGCTAAACCCTCAGTAGGATCACAGCTTTAA  400

seq1  AACTTAAATTTCTTCAAGTTGCCTTAATTCTGGTTGTGAGGTCCAGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAATTTCTTCAAGTTGCCTTAATTCTGGTTGTGAGGTCCAGGAAA  450

seq1  ATTCCCCATTTATTAGAAGTTAAGATGTTTTATATAATACATTGTCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCATTTATTAGAAGTTAAGATGTTTTATATAATACATTGTCACAG  500

seq1  TTATGGTTCTGCCAATGCATAGGAAAGCACCATGGAGCAAGACTCCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTTCTGCCAATGCATAGGAAAGCACCATGGAGCAAGACTCCATGG  550

seq1  AGTTATAATGGGTGTAGTCTTAGTAAGATG-TTCGCAAAAAAAAAAAAAA  599
      |||||||||||||||||||||||||||||| |||||     ||| |||||
seq2  AGTTATAATGGGTGTAGTCTTAGTAAGATGTTTCGC-----AAATAAAAA  595

seq1  AAAAAAAAAATTTAAA-GTACCAGCTTATAAGTGTATGAATGTGTTTCAA  648
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATTTAAAGGTACCAGCTTATAAGTGTATGAATGTGTTTCAA  645

seq1  ATGAAGTTCTGAA-TTCTGAAAG-AGAT-GGAATTTCAGTTGATCTTG-T  694
      ||||||||||||| ||||||||| |||| ||||||||||||||||||| |
seq2  ATGAAGTTCTGAATTTCTGAAAGAAGATGGGAATTTCAGTTGATCTTGTT  695

seq1  CTTTTCCACTGTGTTACATCAAGAAAGTTGCTAGCCAAAGTGGTTTCAT-  743
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  CTTTTCCACTGTGTTACATCAAGAAAGTTGCTAGCCAAAGT-GTTTCATT  744

seq1  -AAAAATACCCAAAGAAT-GCAGACCA-CTGACAACAAAAGGGG-TTGC-  788
       |||| ||| |||||||| |||||||| |||||||||||||||| |||| 
seq2  AAAAATTACTCAAAGAATGGCAGACCATCTGACAACAAAAGGGGTTTGCT  794

seq1  TTTTAACAAACTGACAA-TAAGTC-TTCATTG-CTAAAGACAGGGCTGAC  835
      ||||| ||||||||||| |||||| ||||||| |||| ||||||||||||
seq2  TTTTACCAAACTGACAATTAAGTCTTTCATTGCCTAAGGACAGGGCTGAC  844

seq1  ACAAAACACTGTA-TATGAAAAGGTCAAA-CTGGT-GCGTGCAAGAACAT  882
       |||| ||||||| |||| ||| |||||| ||||| |||||||  | |||
seq2  TCAAATCACTGTATTATG-AAACGTCAAACCTGGTGGCGTGCAGAACCAT  893

seq1  TGACTCTTATGTTCCAGTGTCCTCC-TTATG  912
      ||||||||||||||||||||||||| |||||
seq2  TGACTCTTATGTTCCAGTGTCCTCCGTTATG  924