BAC Information

Click to search

BAC

Clone NameB6Ng01-184N18
Chromosome4 (Build37)
Map Location 80,317,517 - 80,318,657
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneTyrp1, D4Bwg0951e, Mpdz, LOC100040131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184N18.bB6Ng01-184N18.g
ACCGA010129GA010130
length9251,141
definitionB6Ng01-184N18.b B6Ng01-184N18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatagctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatacaacactacacttaatcatcag
ggaaatgcaaaacaaccctgagattccacctcacaccagtcagaatggct
aagataaaaaattcaggtgacaggagatgctggcgaggatgtggagaaag
aggaacactcctctgctgctggtaggattgcaagcttgtacaaccactct
ggaagtcagtctggaggttcctcagaaaattggacatggtactaccagag
gatcccacaatacctctcctgggcatatatccagaagatgttccaaccgc
taagaaggacacgtgctcaactatgttcatagcagccttctctagttatc
ttaagcatgtctactgatgttatctttgtccagctcatgcctagacagtc
atgtttgagatcctttgtaggtatagcttacaacattcctaggagaaaca
atctcagagcaaggaattgtcttgtagctgtagcaaatgggactaggctc
cagatctctgcatttgattggttgtggtttctgtaatcgtctctgtctgt
tgcaaaaagaagtttccttgatgcgggctgaagacatttatctatagcaa
taggaatcatactggtttagtaaagtgacgattgaaaggttctcctccaa
gatccatagctttacttgccctgggtagttgcttagatttcttgtaccag
gcatagtttcctccttgtagagcaggttttaagtccagttagagagatgt
tggttattatcaaggtatgtgtcactatcgcactatcgtaccagtgtgtt
ttactgtgccatgctggttgttgtttgttgttttagagtctaacaaattg
ttttttggtttttgttttgttttgg

gaattcagtacttgtcctgcagcttattactgcttccatgttcattcttg
agaccccagcccttgacagttgagatagtaaaacttcaggaggtggtatg
gatatgcatggaaatgtgtgcatagcaggcaacataagccagattttata
catacatgcatacatacataaatacatatacacgtacataaataccaact
acttgagtatgcgtaccttactggaaattataaaatataactttattctt
agtatatacaaatccagattgcctataaacatgcatgctaagagagcata
agaaatatgtaagacacatgtttgatcaaaagcatttcctttttttttaa
tttttatacatttttaataaaaataggctcttgtcttgaacaacaacata
tggaccacagtttcccatctctccaatccttcagctacacctcccctctc
cccaagctccctttgtgtttccttcttagaaaagagcagccctcctagag
acaaaagccaaacaggacaaaacattgtacagtaaaacaaggcaaaatcc
cctatagaggctggacaataaaacacaatagagtaaaaattgtatgaaac
tattttcaaactgtcctttggtgttcctttctttttaagaaattcattat
ttaaggtcactgtagatgagtatatacttcccatgtgtggtcgtatgcaa
gcctaaaaaaaactctaggaagcaagcattattttttctcagtttgtgaa
tgaggaagaaataaagcacaaacattttaacagctagcccaggttacggt
ttgacagaacaaagattcaattctcagaattttgaccatcctctgcccca
attccatgtttttaagtacttaaccacatttccaagaggaggcttaattt
tcctgatctgattctgagcacttgatggttgtatcacagttactctgtca
aataagaaatctccccataaatgtaaattgatagtaatataaatcaaggg
attgattttttaaaatatttttttttatttacatttcaatgtatctcttt
tccaacttcccccaagggaattcccttatgctatcccttgtcccctgcct
ttcattgaggtgtcccttaccctcacacccatcatgcctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_80317517_80318657
seq2: B6Ng01-184N18.g_65_1205

seq1  GAATTCAGTACTTGTCCTGCAGCTTATTACTGCTTCCATGTTCATTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACTTGTCCTGCAGCTTATTACTGCTTCCATGTTCATTCTTG  50

seq1  AGACCCCAGCCCTTGACAGTTGAGATAGTAAAACTTCAGGAGGTGGTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCAGCCCTTGACAGTTGAGATAGTAAAACTTCAGGAGGTGGTATG  100

seq1  GATATGCATGGAAATGTGTGCATAGCAGGCAACATAAGCCAGATTTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCATGGAAATGTGTGCATAGCAGGCAACATAAGCCAGATTTTATA  150

seq1  CATACATGCATACATACATAAATACATATACACGTACATAAATACCAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGCATACATACATAAATACATATACACGTACATAAATACCAACT  200

seq1  ACTTGAGTATGCGTACCTTACTGGAAATTATAAAATATAACTTTATTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGTATGCGTACCTTACTGGAAATTATAAAATATAACTTTATTCTT  250

seq1  AGTATATACAAATCCAGATTGCCTATAAACATGCATGCTAAGAGAGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATACAAATCCAGATTGCCTATAAACATGCATGCTAAGAGAGCATA  300

seq1  AGAAATATGTAAGACACATGTTTGATCAAAAGCATTTCCTTTTTTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATGTAAGACACATGTTTGATCAAAAGCATTTCCTTTTTTTTTAA  350

seq1  TTTTTATACATTTTTAATAAAAATAGGCTCTTGTCTTGAACAACAACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATACATTTTTAATAAAAATAGGCTCTTGTCTTGAACAACAACATA  400

seq1  TGGACCACAGTTTCCCATCTCTCCAATCCTTCAGCTACACCTCCCCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCACAGTTTCCCATCTCTCCAATCCTTCAGCTACACCTCCCCTCTC  450

seq1  CCCAAGCTCCCTTTGTGTTTCCTTCTTAGAAAAGAGCAGCCCTCCTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCTCCCTTTGTGTTTCCTTCTTAGAAAAGAGCAGCCCTCCTAGAG  500

seq1  ACAAAAGCCAAACAGGACAAAACATTGTACAGTAAAACAAGGCAAAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGCCAAACAGGACAAAACATTGTACAGTAAAACAAGGCAAAATCC  550

seq1  CCTATAGAGGCTGGACAATAAAACACAATAGAGTAAAAATTGTATGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGAGGCTGGACAATAAAACACAATAGAGTAAAAATTGTATGAAAC  600

seq1  TATTTTCAAACTGTCCTTTGGTGTTCCTTTCTTTTTAAGAAATTCATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAAACTGTCCTTTGGTGTTCCTTTCTTTTTAAGAAATTCATTAT  650

seq1  TTAAGGTCACTGTAGATGAGTATATACTTCCCATGTGTGGTCGTATGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTCACTGTAGATGAGTATATACTTCCCATGTGTGGTCGTATGCAA  700

seq1  GCCTAAAAAAAACTCTAGGAAGCAAGCATTATTTTTTCTCAGTTTGTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAAAAAACTCTAGGAAGCAAGCATTATTTTTTCTCAGTTTGTGAA  750

seq1  TGAGGAAGAAATAAAGCACAAACATTTTAACAGCTAGCCCAGGTTACGG-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAGGAAGAAATAAAGCACAAACATTTTAACAGCTAGCCCAGGTTACGGT  800

seq1  TTGACAGAACAAAGATTCAATTCTCAGAATTTTGACCATCCTCTGCCCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGAACAAAGATTCAATTCTCAGAATTTTGACCATCCTCTGCCCCA  850

seq1  ATTCCATGTTTTTAAGTACTTAACCACATTTCCAAGAGGAGGC-TAAATT  898
      ||||||||||||||||||||||||||||||||||||||||||| ||| ||
seq2  ATTCCATGTTTTTAAGTACTTAACCACATTTCCAAGAGGAGGCTTAATTT  900

seq1  TCCTGATCTGATTCTGAGCACTTGATGGTTGTATCACAGTTACTCTGTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATCTGATTCTGAGCACTTGATGGTTGTATCACAGTTACTCTGTCA  950

seq1  AATAAGAAATCTCCCCATAAATGTAAATTGATAGTAATATAAAATCAGGG  998
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  AATAAGAAATCTCCCCATAAATGTAAATTGATAGTAATATAAATCAAGGG  1000

seq1  ATTGATTTTTTAAAA-ATATTTTTTTATTTACATTTCAAATGTTATCTCC  1047
      ||||||||||||||| || |||||||||||||||||| |||| |||||| 
seq2  ATTGATTTTTTAAAATATTTTTTTTTATTTACATTTC-AATG-TATCTCT  1048

seq1  TTTCCCACTTTCCCCCAAGGAATCCCCCTATGCTATCCCCTGTCCCCTGC  1097
      ||||| |||| |||| | ||||| ||| ||||||||||| ||||||||||
seq2  TTTCCAACTTCCCCCAAGGGAATTCCCTTATGCTATCCCTTGTCCCCTGC  1098

seq1  --TTCTATGAGGGTGTTCCCCTACCCTCACACCCATTCATGCCTAC  1141
        |||  ||| |||| |||| |||||||||||||| ||||||||||
seq2  CTTTCATTGA-GGTG-TCCCTTACCCTCACACCCA-TCATGCCTAC  1141


| Home | SequenceCutter | Blast | Download |