BAC Information

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BAC

Clone NameB6Ng01-184O12
Chromosome4 (Build37)
Map Location 78,291,937 - 78,408,522
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039974, LOC100039996
Downstream geneLOC100040026, LOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184O12.bB6Ng01-184O12.g
ACCGA010164GA010165
length1,1391,146
definitionB6Ng01-184O12.b B6Ng01-184O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,407,369 - 78,408,522)(78,291,937 - 78,293,076)
sequence
gaattctttatacagaacctgaccaaaggaaaacaaaaaagtataacagg
acagtagcagctagagagtcacttcttctcaggaaacattttaccctcac
tcatgggaggaagacatatgttcatttgttgatgagaatgattgaaacat
ggataaatttgtttcagaaaagattatcaatctcagaaaaactggaaaac
agtaactctaattaaatgacagaattaggatctattgcaaaagaacaaaa
tggcccttgactaggaacatttagtgcatgatatacatggaaggctgaag
agatggtaatatatatttcaatggatattggtatgagggattacctccta
aaggaaaccacagaaatactctttggatttgtattgaagaacttaagtaa
ttttagtaaatcactctgaatcttatacaaacaactttaatttttttttt
ttttttttttttgagatagggtttctctgtgtagccctggctgtcctaga
actcactttgtagatcaggctggcctagaactcaggaatctgcctgcctc
tgcctcccaggtgctgggattaaaggcatgcgccaccactgccccactaa
ttttagtttttacaatcaaacattttaaagaagagtttccttgtatgctg
tttcaatacaatagcaaagtacatgatacattttggaaattagaagactt
aaaattaataattaaataaaatgtataaggaaaaggtgataactttcaat
gttctctgtaagaatttaaaagaaattaaaatatacaatgaaatatagca
agccaattattggtgttaacatttctacttctatttcaattaggctattt
caataatttctatttcaattattggcagcttttgtgtgtcaacctggcat
aagtggagttatcacagagaaaggagcccctcttgaggaaatgcctccat
gtgatccagctgtagatatttttctcagttagcaatagagggggggaagt
tccagcccattgtattgtgatgccacccctggctgagtcctggttctata
gaaagcagctgagcagcagcagaacaggtagtaggtacatcctctcctgc
cctgcatcagctctgcttctgacctgtttagttccagcc
gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
agcaagcaacgaatcgggagctgtcacgccatatcaggtgatgaaacgtc
acactgcgggttctaaaagcagcgccattttcccggtttgggatcttcct
gagaagcaagcaataaagcttttgccgcggaagattctggtttgttgcgt
ctttcttgccggtcgagcggaacgcaatactcctcagtaactttgtcaag
ctcttctctctccaggccaccatttcatattttgtgcaagtgacattatt
tagtggtgaagcgccctctccacccaggccacatttggctacacttgatt
attttacatataacatcatagagtccccatgactggatgatatgtttctt
taattccatgcagctactggccacttttattttgtactgagctaagttgt
ttatcccttgaagattcatagactccttctaagtgtagacaaaatgcatc
atcattaaatgtcaaacattgctacatttaatttgaaaagagtattttcc
ttcagcaaattcctagacaaatatcaaattgatctcatacaaaccttgga
agtgaatgggtttcttttcacagtctgcatgttgttcttgccaagaactt
ggagaggttcaacaggaataaattaatagcaatttacctcagctatgcct
tctgaatccatgtataattaataagaacatagcatctgtaaaggaaagaa
tctataaatgtaatggggaaagtgatgatacaaccaagagagctttcttg
agctggagcccatttttaaaagattaaataggcctgaggtatataaataa
gccacaattgcacagtcagtgatcatcatcatcatcatcatcatcatcat
catcatcatcaaactgcatactgctctgatttctaattgcctagggtagc
ttgtactgtctcagatattttctttttacgattattctcttcttcatgca
aaaaaaaaaaaaaagccattttctttaattattctgcactctttctattc
ctttatcttaatttggcataagctcacctattttattgttaatatttttt
atttattactgctttattatttttgttccagcctatgtagtctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_78407369_78408522
seq2: B6Ng01-184O12.b_46_1184 (reverse)

seq1  GGCTGGAACTTAAACAGCTCAGGAAGCAGGAGCTGATGCAGAGGCCAAGG  50
      ||||||||| ||||||| ||| |||||| |||||||||||| |||  |||
seq2  GGCTGGAAC-TAAACAGGTCA-GAAGCA-GAGCTGATGCAG-GGC--AGG  44

seq1  AGA-GATGTTACTTACCTACTTGTTTCTGCTGGCTTGCTCAGCTTGCTTT  99
      ||| |||| ||| || |||| || ||||||||   |||||||| ||||||
seq2  AGAGGATG-TACCTA-CTACCTG-TTCTGCTG--CTGCTCAGC-TGCTTT  88

seq1  CTTATAGAACCCAGGACTTCCAGCCCAGGGGTGGCATCAC-ATACAATGG  148
      | ||||||| ||||||||  ||| |||||||||||||||| |||||||||
seq2  C-TATAGAA-CCAGGACT--CAG-CCAGGGGTGGCATCACAATACAATGG  133

seq1  GCTGGGACTT-CCCCCCTCTATTGCTAACTGAG-AAAATATCTTACAGCT  196
      ||||| |||| |||||||||||||||||||||| |||||||| |||||||
seq2  GCTGGAACTTCCCCCCCTCTATTGCTAACTGAGAAAAATATC-TACAGCT  182

seq1  GGATCACATGGAGGCATTTCCTCAAGAGGGGCTCCTTTCTCTGTGATAAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACATGGAGGCATTTCCTCAAGAGGGGCTCCTTTCTCTGTGATAAC  232

seq1  TCCACCTTATGCCAGGTTGACACACAAAAGCTGCCAATAATTGAAATAGA  296
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCA-CTTATGCCAGGTTGACACACAAAAGCTGCCAATAATTGAAATAGA  281

seq1  AATTATTGAAATAGCCTAATTGAAATAGAAGTAGAAATGTTAACACCAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGAAATAGCCTAATTGAAATAGAAGTAGAAATGTTAACACCAAT  331

seq1  AATTGGCTTGCTATATTTCATTGTATATTTTAATTTCTTTTAAATTCTTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCTTGCTATATTTCATTGTATATTTTAATTTCTTTTAAATTCTTA  381

seq1  CAGAGAACATTGAAAGTTATCACCTTTTCCTTATACATTTTATTTAATTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACATTGAAAGTTATCACCTTTTCCTTATACATTTTATTTAATTA  431

seq1  TTAATTTTAAGTCTTCTAATTTCCAAAATGTATCATGTACTTTGCTATTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTAAGTCTTCTAATTTCCAAAATGTATCATGTACTTTGCTATTG  481

seq1  TATTGAAACAGCATACAAGGAAACTCTTCTTTAAAATGTTTGATTGTAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAACAGCATACAAGGAAACTCTTCTTTAAAATGTTTGATTGTAAA  531

seq1  AACTAAAATTAGTGGGGCAGTGGTGGCGCATGCCTTTAATCCCAGCACCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAATTAGTGGGGCAGTGGTGGCGCATGCCTTTAATCCCAGCACCT  581

seq1  GGGAGGCAGAGGCAGGCAGATTCCTGAGTTCTAGGCCAGCCTGATCTACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGGCAGGCAGATTCCTGAGTTCTAGGCCAGCCTGATCTACA  631

seq1  AAGTGAGTTCTAGGACAGCCAGGGCTACACAGAGAAACCCTATCTCAAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTTCTAGGACAGCCAGGGCTACACAGAGAAACCCTATCTCAAAA  681

seq1  AAAAAAAAAAAAAAAAAATTAAAGTTGTTTGTATAAGATTCAGAGTGATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAATTAAAGTTGTTTGTATAAGATTCAGAGTGATT  731

seq1  TACTAAAATTACTTAAGTTCTTCAATACAAATCCAAAGAGTATTTCTGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAATTACTTAAGTTCTTCAATACAAATCCAAAGAGTATTTCTGTG  781

seq1  GTTTCCTTTAGGAGGTAATCCCTCATACCAATATCCATTGAAATATATAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTTAGGAGGTAATCCCTCATACCAATATCCATTGAAATATATAT  831

seq1  TACCATCTCTTCAGCCTTCCATGTATATCATGCACTAAATGTTCCTAGTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCTCTTCAGCCTTCCATGTATATCATGCACTAAATGTTCCTAGTC  881

seq1  AAGGGCCATTTTGTTCTTTTGCAATAGATCCTAATTCTGTCATTTAATTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCATTTTGTTCTTTTGCAATAGATCCTAATTCTGTCATTTAATTA  931

seq1  GAGTTACTGTTTTCCAGTTTTTCTGAGATTGATAATCTTTTCTGAAACAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACTGTTTTCCAGTTTTTCTGAGATTGATAATCTTTTCTGAAACAA  981

seq1  ATTTATCCATGTTTCAATCATTCTCATCAACAAATGAACATATGTCTTCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCCATGTTTCAATCATTCTCATCAACAAATGAACATATGTCTTCC  1031

seq1  TCCCATGAGTGAGGGTAAAATGTTTCCTGAGAAGAAGTGACTCTCTAGCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGAGTGAGGGTAAAATGTTTCCTGAGAAGAAGTGACTCTCTAGCT  1081

seq1  GCTACTGTCCTGTTATACTTTTTTGTTTTCCTTTGGTCAGGTTCTGTATA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGTCCTGTTATACTTTTTTGTTTTCCTTTGGTCAGGTTCTGTATA  1131

seq1  AAGAATTC  1154
      ||||||||
seq2  AAGAATTC  1139

seq1: chr4_78291937_78293076
seq2: B6Ng01-184O12.g_65_1210

seq1  GAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATG  50

seq1  AGCAAGCAACGAATCGGGAGCTGTCACGCCATATCAGGTGATGAAACGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCAACGAATCGGGAGCTGTCACGCCATATCAGGTGATGAAACGTC  100

seq1  ACACTGCGGGTTCTAAAAGCAGCGCCATTTTCCCGGTTTGGGATCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCGGGTTCTAAAAGCAGCGCCATTTTCCCGGTTTGGGATCTTCCT  150

seq1  GAGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGT  200

seq1  CTTTCTTGCCGGTCGAGCGGAACGCAATACTCCTCAGTAACTTTGTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGCCGGTCGAGCGGAACGCAATACTCCTCAGTAACTTTGTCAAG  250

seq1  CTCTTCTCTCTCCAGGCCACCATTTCATATTTTGTGCAAGTGACATTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCTCTCCAGGCCACCATTTCATATTTTGTGCAAGTGACATTATT  300

seq1  TAGTGGTGAAGCGCCCTCTCCACCCAGGCCACATTTGGCTACACTTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTGAAGCGCCCTCTCCACCCAGGCCACATTTGGCTACACTTGATT  350

seq1  ATTTTACATATAACATCATAGAGTCCCCATGACTGGATGATATGTTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACATATAACATCATAGAGTCCCCATGACTGGATGATATGTTTCTT  400

seq1  TAATTCCATGCAGCTACTGGCCACTTTTATTTTGTACTGAGCTAAGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCATGCAGCTACTGGCCACTTTTATTTTGTACTGAGCTAAGTTGT  450

seq1  TTATCCCTTGAAGATTCATAGACTCCTTCTAAGTGTAGACAAAATGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCTTGAAGATTCATAGACTCCTTCTAAGTGTAGACAAAATGCATC  500

seq1  ATCATTAAATGTCAAACATTGCTACATTTAATTTGAAAAGAGTATTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTAAATGTCAAACATTGCTACATTTAATTTGAAAAGAGTATTTTCC  550

seq1  TTCAGCAAATTCCTAGACAAATATCAAATTGATCTCATACAAACCTTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAAATTCCTAGACAAATATCAAATTGATCTCATACAAACCTTGGA  600

seq1  AGTGAATGGGTTTCTTTTCACAGTCTGCATGTTGTTCTTGCCAAGAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGGGTTTCTTTTCACAGTCTGCATGTTGTTCTTGCCAAGAACTT  650

seq1  GGAGAGGTTCAACAGGAATAAATTAATAGCAATTTACCTCAGCTATGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTTCAACAGGAATAAATTAATAGCAATTTACCTCAGCTATGCCT  700

seq1  TCTGAATCCATGTATAATTAATAAGAACATAGCATCTGTAAAGGAAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATCCATGTATAATTAATAAGAACATAGCATCTGTAAAGGAAAGAA  750

seq1  TCTATAAATGTAATGGGGAAAGTGATGATACAACCAAGAGAGCTTTCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAATGTAATGGGGAAAGTGATGATACAACCAAGAGAGCTTTCTTG  800

seq1  AGCTGGAGCCCATTTTTAAAAGATTAAATAGGCCTGAGGTATATAAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGCCCATTTTTAAAAGATTAAATAGGCCTGAGGTATATAAATAA  850

seq1  GCCACAATTGCACAGTCAGTGATCATCATCATCATCATCATCATCATCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAATTGCACAGTCAGTGATCATCATCATCATCATCATCATCATCAT  900

seq1  CATCATCATCAAACTGCATACTGCTCTGATTTCTAA-TGCCTA-GGTAGC  948
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  CATCATCATCAAACTGCATACTGCTCTGATTTCTAATTGCCTAGGGTAGC  950

seq1  TTGTACTGTCTCAGA-ATATTTCTTTTACGATTATCTCCTTCTTCATGCA  997
      ||||||||||||||| || ||  ||||||||||||   ||||||||||||
seq2  TTGTACTGTCTCAGATATTTTCTTTTTACGATTATTCTCTTCTTCATGCA  1000

seq1  AAAAAAAAAAAAAGGCCATTTTCTTTAAATA-TCTGCACTC-TTCTATTC  1045
      ||||||||||||| |||||||||||||| || ||||||||| ||||||| 
seq2  AAAAAAAAAAAAAAGCCATTTTCTTTAATTATTCTGCACTCTTTCTATT-  1049

seq1  CCTTTATCTTAATTT-GCATAAGCCTCACCTA-TTTATTGTT-ATATTTT  1092
      ||||||||||||||| ||||||| |||||||| ||||||||| |||||||
seq2  CCTTTATCTTAATTTGGCATAAG-CTCACCTATTTTATTGTTAATATTTT  1098

seq1  AT-TTTATTAACTG-TTTATTATTTTTG-TCCAAGCTATGTAAAGTCTTT  1139
       | |||||| |||| ||||||||||||| ||||  ||||||  |||||||
seq2  TTATTTATT-ACTGCTTTATTATTTTTGTTCCAGCCTATGT--AGTCTTT  1145

seq1  C  1140
      |
seq2  C  1146