BAC Information

Click to search

BAC

Clone NameB6Ng01-185I08
Chromosome4 (Build37)
Map Location 37,243,536 - 37,354,395
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042132, LOC545600, LOC621458
Downstream geneLOC277771, LOC100039448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185I08.bB6Ng01-185I08.g
ACCGA010607GA010608
length1,1981,177
definitionB6Ng01-185I08.b B6Ng01-185I08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,243,536 - 37,244,737)(37,353,205 - 37,354,395)
sequence
gaattcagggctgcaactcaagcaggattccgaaggagggcaaggaaaca
acagagtgcatggagggacacattgtacatacttgtttcccacaactcgc
taaatcttttttcttatacaacccagggccacttcataggaatggtactt
gtcctcagtgaactgccccccacccccaatttatcagtaatcaaagaaat
tatctgtagacttgcttctagtccattcttttgaagaaatgttctcattc
gagtttaccgactctcagatgatactagttgatgccattgtgaaaatata
aatttgctgtctggcacactgctcttaacactgtgagttcacatgtgatg
ctgttctgctatgtcaagaatatcatgcttaattattttctaaaggtcac
tgttttttttttttcttttttgaaagcaataaacttcttctattaattag
gtgcttatacctcactcgtgtcttaatagccaccttttagtcgatatcat
tacgtgagttgtgtattgttgctacaccgaatttccccacataaatccag
catattcttcaaactgtttaaaagattttgattatcagttttataatatc
ttgttaaaaatgatgaagagtctcaaatagccactcattcacttacgtgt
cttaataccaaatgtaggtgatagggctctaggaaatccttctaactaga
gtgatgttctgattcagaccgtagctcagggatagagcacatagcttgaa
tgcatgacaccctagatttcatgtgaaaaattacaaccaattataattgt
gatatttgtcctaaaatcattaaagcaccaatgacttataagcaaaagcc
acacacaagcctttgaattggtacacacatgatgattacctggcagtgta
tttttactgttcttgttttggaaccagtgtcttccttcatcaataaatct
tcagctcctaaatttgtctctcatcttattttattgggccaaaatccatt
tgtatatcaccattgctttacctctcaggattctctataaatataatcta
ctcacctactgctataatagctagtgttaatactcaagcacgttttaagt
gacctctcagatagcaatttgtacctcaattgtaggattttaaaccctaa
attcatattgcatgattggcaagatatctgaatccattaaccctgggg

gaattcacatttataaagtaaattgtcaaaacttactgtactatcaagca
agttttagtaggatggcataaaaactttgccttgattactaaaatcccat
gcacattagctgtctgtcatctcctctcactgctgagcaagaatagtaaa
atccatttgtgaaggctttaaggaaattttcctgctaaacacagtacttg
actcctttttgctactgtatctagtttttagatttcattctattatgtag
cttattaaaaatttttaatgattttatagtccttcccaataaaaatttta
attatctagtagctgttcaaaattattattctcaatatgattcatcatta
gaaacaaaattagattctgccttttccaacattcttttgaagactactaa
gtgttaactgtatgatctttgttaatcagtaaaatgtacgaaaaataaat
ttacacaattttttgaaagatattctattttaaaactctcagagaggtca
aactcagattttatgaattagttttttcttaaatagaaggcagaaccagg
acttgagcttctgagaattaggtaggtactttcttccaaaaaattacttg
atttcatttattggtcttttgttactttgacttgcccaggaataacagtc
atccaaaattcatttgctcttttgtccccagcagtctgttagtttgtgat
aaacctggactttatgtaagttcgatatatagagttctctatgactgtaa
agttccaaactcatattaggaatacagattgatacggatgcaaagctcct
ctggaaacatttaaaatgaaccacaggagtaggtagcacacttgtaatta
caacacctttcataatgatttcatcaatcatgttgggaaagttaagatta
tttattttattattgccaacttttgtaaagtcacagtgtttataaatatt
gcaatttctaaattaaatttctgattcccagttattgatcatgggacata
ttttgtacatattttgtatctgatagtactaaactctctctatctctgct
catgatatagaaatgatataataatattgctaccaaaggctattgaagat
ataattttcaataaaaacatgtaaaaagtatgagtattctgctttgtaac
ctccaccgaggcaaatttttattaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_37243536_37244737
seq2: B6Ng01-185I08.b_42_1239

seq1  GAATTCAGGGCTGCAACTCAAGCAGGATTCCGAAGGAGGGCAAGGAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGCTGCAACTCAAGCAGGATTCCGAAGGAGGGCAAGGAAACA  50

seq1  ACAGAGTGCATGGAGGGACACATTGTACATACTTGTTTCCCACAACTCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGCATGGAGGGACACATTGTACATACTTGTTTCCCACAACTCGC  100

seq1  TAAATCTTTTTTCTTATACAACCCAGGGCCACTTCATAGGAATGGTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTTTTTCTTATACAACCCAGGGCCACTTCATAGGAATGGTACTT  150

seq1  GTCCTCAGTGAACTGCCCCCCACCCCCAATTTATCAGTAATCAAAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGTGAACTGCCCCCCACCCCCAATTTATCAGTAATCAAAGAAAT  200

seq1  TATCTGTAGACTTGCTTCTAGTCCATTCTTTTGAAGAAATGTTCTCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTAGACTTGCTTCTAGTCCATTCTTTTGAAGAAATGTTCTCATTC  250

seq1  GAGTTTACCGACTCTCAGATGATACTAGTTGATGCCATTGTGAAAATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTACCGACTCTCAGATGATACTAGTTGATGCCATTGTGAAAATATA  300

seq1  AATTTGCTGTCTGGCACACTGCTCTTAACACTGTGAGTTCACATGTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCTGTCTGGCACACTGCTCTTAACACTGTGAGTTCACATGTGATG  350

seq1  CTGTTCTGCTATGTCAAGAATATCATGCTTAATTATTTTCTAAAGGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGCTATGTCAAGAATATCATGCTTAATTATTTTCTAAAGGTCAC  400

seq1  TGTTTTTTTTTTTTCTTTTTTGAAAGCAATAAACTTCTTCTATTAATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTTTTTTCTTTTTTGAAAGCAATAAACTTCTTCTATTAATTAG  450

seq1  GTGCTTATACCTCACTCGTGTCTTAATAGCCACCTTTTAGTCGATATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTATACCTCACTCGTGTCTTAATAGCCACCTTTTAGTCGATATCAT  500

seq1  TACGTGAGTTGTGTATTGTTGCTACACCGAATTTCCCCACATAAATCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGAGTTGTGTATTGTTGCTACACCGAATTTCCCCACATAAATCCAG  550

seq1  CATATTCTTCAAACTGTTTAAAAGATTTTGATTATCAGTTTTATAATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCTTCAAACTGTTTAAAAGATTTTGATTATCAGTTTTATAATATC  600

seq1  TTGTTAAAAATGATGAAGAGTCTCAAATAGCCACTCATTCACTTACGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAAAATGATGAAGAGTCTCAAATAGCCACTCATTCACTTACGTGT  650

seq1  CTTAATACCAAATGTAGGTGATAGGGCTCTAGGAAATCCTTCTAACTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATACCAAATGTAGGTGATAGGGCTCTAGGAAATCCTTCTAACTAGA  700

seq1  GTGATGTTCTGATTCAGACCGTAGCTCAGGGATAGAGCACATAGCTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTTCTGATTCAGACCGTAGCTCAGGGATAGAGCACATAGCTTGAA  750

seq1  TGCATGACACCCTAGATTTCATGTGAAAAATTACAACCAATTATAATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGACACCCTAGATTTCATGTGAAAAATTACAACCAATTATAATTGT  800

seq1  GATATTTGTCCTAAAATCATTAAAGCACCAATGACTTATAAGCAAAAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGTCCTAAAATCATTAAAGCACCAATGACTTATAAGCAAAAGCC  850

seq1  ACACACAAGCCTTTGAATTGGTACACACATGATGATTACCTGGCAGTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAGCCTTTGAATTGGTACACACATGATGATTACCTGGCAGTGTA  900

seq1  TTTTTACTGTTC-TGTTTTGGAACCAGTGTCTTCCTTCATCAATAAATCT  949
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTGTTCTTGTTTTGGAACCAGTGTCTTCCTTCATCAATAAATCT  950

seq1  TCAGCTCCT-AATTTGTCTCTCATCTTA-TTTATTGGGCCAAAATCCATT  997
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  TCAGCTCCTAAATTTGTCTCTCATCTTATTTTATTGGGCCAAAATCCATT  1000

seq1  TGTATATCACCATTGCTTTACCTCTCAGGATTCTCTATAATATTAATCTA  1047
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  TGTATATCACCATTGCTTTACCTCTCAGGATTCTCTATAAATATAATCTA  1050

seq1  CTCACCTACTGCTAT-ATAGCTAGTGTTAATACTCAAGCAACGTTTTAAG  1096
      ||||||||||||||| ||||||||||||||||||||||| ||||||||| 
seq2  CTCACCTACTGCTATAATAGCTAGTGTTAATACTCAAGC-ACGTTTTAA-  1098

seq1  GTGACCCTCTCAGATAAGCATTTGTAACCTTCATTTGGTTAAGATTTTAA  1146
      |||| |||||||||||   |||||||  | ||| |||  || ||||||||
seq2  GTGA-CCTCTCAGATAGCAATTTGTA--CCTCAATTG--TAGGATTTTAA  1143

seq1  ACCCT-AATTCATATTTTCATGGATTTGCAAAAGTATTCCTG-ATCCATT  1194
      ||||| |||||||| || ||| |||| |||| | |||  ||| |||||||
seq2  ACCCTAAATTCATA-TTGCAT-GATTGGCAAGA-TAT--CTGAATCCATT  1188

seq1  AA--CTGGGG  1202
      ||  ||||||
seq2  AACCCTGGGG  1198


seq1: chr4_37353205_37354395
seq2: B6Ng01-185I08.g_62_1238 (reverse)

seq1  TTTTAAT-AAAATATGCCT-AGTGGAGGTACAAAAGCCAGAAATACTCAT  48
      ||||||| ||||| |||||  ||||||||   |||| ||| |||||||||
seq2  TTTTAATAAAAATTTGCCTCGGTGGAGGTTACAAAG-CAG-AATACTCAT  48

seq1  ACTTTTTTTACATG-TTTTATTGAAAATTTAATTAATCTTTCCATAGCTT  97
      ||  |||||||||| ||||||||||||||  ||  ||| ||| ||||| |
seq2  AC--TTTTTACATGTTTTTATTGAAAATT--AT--ATC-TTCAATAGCCT  91

seq1  TTGGGTTACCAATATTAATAATATCATTTCTATATCATGAGCAGAGATAG  147
      ||||  || ||||||| || ||||||||||||||||||||||||||||||
seq2  TTGG--TAGCAATATT-ATTATATCATTTCTATATCATGAGCAGAGATAG  138

seq1  AGAAGAGTTTAGTTACTTATTCAAGATACAAAAATATGTACAAAATATGT  197
      || ||||||||| ||| |||   |||||| ||||||||||||||||||||
seq2  AG-AGAGTTTAG-TAC-TAT--CAGATAC-AAAATATGTACAAAATATGT  182

seq1  -CCATGATCAAATACTGGGAATCAGAAATTTAATTTAG-AATTGCAATAT  245
       ||||||||||  ||||||||||||||||||||||||| |||||||||| 
seq2  CCCATGATCAATAACTGGGAATCAGAAATTTAATTTAGAAATTGCAATA-  231

seq1  TTTATAAACACTGTGACTTTACAAAAGTTGGCAATAATAAAATAAATAAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAACACTGTGACTTTACAAAAGTTGGCAATAATAAAATAAATAAT  281

seq1  CTTAACTTTCCCAACATGATTGATGAAATCATTATGAAAGGTGTTGTAAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTTTCCCAACATGATTGATGAAATCATTATGAAAGGTGTTGTAAT  331

seq1  TACAAGTGTGCTACCTACTCCTGTGGTTCATTTTAAATGTTTCCAGAGGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTGTGCTACCTACTCCTGTGGTTCATTTTAAATGTTTCCAGAGGA  381

seq1  GCTTTGCATCCGTATCAATCTGTATTCCTAATATGAGTTTGGAACTTTAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCATCCGTATCAATCTGTATTCCTAATATGAGTTTGGAACTTTAC  431

seq1  AGTCATAGAGAACTCTATATATCGAACTTACATAAAGTCCAGGTTTATCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAGAGAACTCTATATATCGAACTTACATAAAGTCCAGGTTTATCA  481

seq1  CAAACTAACAGACTGCTGGGGACAAAAGAGCAAATGAATTTTGGATGACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAACAGACTGCTGGGGACAAAAGAGCAAATGAATTTTGGATGACT  531

seq1  GTTATTCCTGGGCAAGTCAAAGTAACAAAAGACCAATAAATGAAATCAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCCTGGGCAAGTCAAAGTAACAAAAGACCAATAAATGAAATCAAG  581

seq1  TAATTTTTTGGAAGAAAGTACCTACCTAATTCTCAGAAGCTCAAGTCCTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTGGAAGAAAGTACCTACCTAATTCTCAGAAGCTCAAGTCCTG  631

seq1  GTTCTGCCTTCTATTTAAGAAAAAACTAATTCATAAAATCTGAGTTTGAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCCTTCTATTTAAGAAAAAACTAATTCATAAAATCTGAGTTTGAC  681

seq1  CTCTCTGAGAGTTTTAAAATAGAATATCTTTCAAAAAATTGTGTAAATTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGAGAGTTTTAAAATAGAATATCTTTCAAAAAATTGTGTAAATTT  731

seq1  ATTTTTCGTACATTTTACTGATTAACAAAGATCATACAGTTAACACTTAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCGTACATTTTACTGATTAACAAAGATCATACAGTTAACACTTAG  781

seq1  TAGTCTTCAAAAGAATGTTGGAAAAGGCAGAATCTAATTTTGTTTCTAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTCAAAAGAATGTTGGAAAAGGCAGAATCTAATTTTGTTTCTAAT  831

seq1  GATGAATCATATTGAGAATAATAATTTTGAACAGCTACTAGATAATTAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATCATATTGAGAATAATAATTTTGAACAGCTACTAGATAATTAAA  881

seq1  ATTTTTATTGGGAAGGACTATAAAATCATTAAAAATTTTTAATAAGCTAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTGGGAAGGACTATAAAATCATTAAAAATTTTTAATAAGCTAC  931

seq1  ATAATAGAATGAAATCTAAAAACTAGATACAGTAGCAAAAAGGAGTCAAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGAATGAAATCTAAAAACTAGATACAGTAGCAAAAAGGAGTCAAG  981

seq1  TACTGTGTTTAGCAGGAAAATTTCCTTAAAGCCTTCACAAATGGATTTTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGTTTAGCAGGAAAATTTCCTTAAAGCCTTCACAAATGGATTTTA  1031

seq1  CTATTCTTGCTCAGCAGTGAGAGGAGATGACAGACAGCTAATGTGCATGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTTGCTCAGCAGTGAGAGGAGATGACAGACAGCTAATGTGCATGG  1081

seq1  GATTTTAGTAATCAAGGCAAAGTTTTTATGCCATCCTACTAAAACTTGCT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAGTAATCAAGGCAAAGTTTTTATGCCATCCTACTAAAACTTGCT  1131

seq1  TGATAGTACAGTAAGTTTTGACAATTTACTTTATAAATGTGAATTC  1191
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTACAGTAAGTTTTGACAATTTACTTTATAAATGTGAATTC  1177


| Home | SequenceCutter | Blast | Download |