BAC Information

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BAC

Clone NameB6Ng01-185N18
Chromosome4 (Build37)
Map Location 90,975,107 - 91,113,689
singlet/doubletdoublet
Overlap geneElavl2, LOC664864
Upstream geneLOC619842, LOC435792, Ppia-ps4_804.1, LOC664840, LOC664848, LOC100042274
Downstream geneLOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185N18.bB6Ng01-185N18.g
ACCGA010856GA010857
length1,1611,061
definitionB6Ng01-185N18.b B6Ng01-185N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,975,107 - 90,976,273)(91,112,638 - 91,113,689)
sequence
gaattcaaaagcagcctcactacatggtgagctgcaggccaacctgcagt
acagagtgagatctggtctttagacaacagtaaaatatatatatatatat
aataatttaaaaatcagatatggcctcccaaagcattttctcatattctg
acccatggtcctttaaatgtcatacatctacataaaattgcatacctgtt
attttgtctcttacaagcttacaggactctatctcgccaatgctcccaaa
aagactctttagttcttcctgtgtcatgttctgaggaaggtagttgacta
ttaggttggtcttgctgtcctctgtgttcccggagtcaactggtgaggag
cagttgttgtttacagtggttggaccattggctgtgttattgcaagttgg
cccattagacagttgtgtttccatggcagcaattacctgctaaaaacaga
gaaaataagaaatgtcagaattcatatttcacaacctattagagattcca
cccaagagtgaaacacttgtcactgaacacaagtcatcctgctgaggtta
taataaagcttcaacaaaaagtgcagcacctacgctaattgtattccata
gtaagctattcaacataaggctgcaattatattttctacatacatattcc
atacatgcacataagcacaatttaaatgttgcaacatttttctagaatca
tatcctgagtatagtcatataccctcacttacctgtagtatccacagagg
aagtgatttaataccaaagggcacagaactgtgtcctgactaaaaattat
tctagaaaataaaaatgcttaacatgctgccaaaacaaacaagcaaacaa
acaaaagtgatagagtaattctgaagaagagtctttcagttcataagagt
caattatctaaagactgacaggcattcgttaacaaaactcaggagcaaag
ggagcaaaagtactttcaaaattaaaatttgtcaacatgtacctgttttg
ggttacatactgaaatatttgattaccattattttttaccgctatcatgg
gtagaatgaagaaacatagatgtttatatgttcagagtgaaaggtagcta
ctcgggagtaaaactatgatattcgcctacattgtagactcggttaacca
ttttgtcaatt

gaattcagaggcaattttccaagcagcgcaattcagtgagacgttgagag
aagccagtttgaattagtgagcttggaaaggagttttgagacagaacagc
tgagttgaaccagccagccagagttcagaaagaactagaaaaggtgagct
tcttcagcagtaagccttcaagattacgcttacatctagagaataaaagt
tacttttatagagcattgcattagtatcaagcagtggtgagtttagggga
ctctattgacattgggaaagatttgggaaacagtcttatatctttgcaga
ctactaccaaaggaatcttaattctggattatatataaatgcctttctgc
cagtcttctactataatattgttctccatcactctagaagcacctgcctg
cttcctctatcattgacttggacagaggaacttttcctcttctgatgaca
aaaataagaatagccatatttttatatttcagacactatgctgttttatg
ggtatcaccacagcagtcagttaaccacccttgagtcattaacagtgagc
attatcatcctatctataaatgaacaaatgaaaaggtctagtaattttcc
cacaatcacacagctaaagatgatacagctggcatttgaattaacacagt
ctaattgtaggacctaaccattgaaccactaatggtctcctgctttccac
tgtaaattcctatacccttaatgcaaatacaatgtatttccaaattaatt
tttacccaaatctttctcaccatgaacagaattctgagttccaggttatt
taaggtgataaaacttaaaacctcttgtcatctcattacatttggttttt
tcacctgaaatttcaaaaaacgaaaaacagaaacgaaacaaacaaacaaa
tcaaaaacccttggcataaacaaaggtgaggaaaatatttactttgaata
tctgttaatccaaaaattcaagttatcgctcaaatcaagatcattctgct
aaaatagtaggaaaaggcctatggaaaaccgaagaaataatcagttaaag
ggatcttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_90975107_90976273
seq2: B6Ng01-185N18.b_47_1207

seq1  GAATTCAAAAGCAGCCTCACTACATGGTGAGCTGCAGGCCAACCTGCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGCAGCCTCACTACATGGTGAGCTGCAGGCCAACCTGCAGT  50

seq1  ACAGAGTGAGATCTGGTCTTTAGACAACAGTAAAATATATATATATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGAGATCTGGTCTTTAGACAACAGTAAAATATATATATATATAT  100

seq1  AATAATTTAAAAATCAGATATGGCCTCCCAAAGCATTTTCTCATATTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTAAAAATCAGATATGGCCTCCCAAAGCATTTTCTCATATTCTG  150

seq1  ACCCATGGTCCTTTAAATGTCATACATCTACATAAAATTGCATACCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGGTCCTTTAAATGTCATACATCTACATAAAATTGCATACCTGTT  200

seq1  ATTTTGTCTCTTACAAGCTTACAGGACTCTATCTCGCCAATGCTCCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCTCTTACAAGCTTACAGGACTCTATCTCGCCAATGCTCCCAAA  250

seq1  AAGACTCTTTAGTTCTTCCTGTGTCATGTTCTGAGGAAGGTAGTTGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTTTAGTTCTTCCTGTGTCATGTTCTGAGGAAGGTAGTTGACTA  300

seq1  TTAGGTTGGTCTTGCTGTCCTCTGTGTTCCCGGAGTCAACTGGTGAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTGGTCTTGCTGTCCTCTGTGTTCCCGGAGTCAACTGGTGAGGAG  350

seq1  CAGTTGTTGTTTACAGTGGTTGGACCATTGGCTGTGTTATTGCAAGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTTGTTTACAGTGGTTGGACCATTGGCTGTGTTATTGCAAGTTGG  400

seq1  CCCATTAGACAGTTGTGTTTCCATGGCAGCAATTACCTGCTAAAAACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTAGACAGTTGTGTTTCCATGGCAGCAATTACCTGCTAAAAACAGA  450

seq1  GAAAATAAGAAATGTCAGAATTCATATTTCACAACCTATTAGAGATTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAGAAATGTCAGAATTCATATTTCACAACCTATTAGAGATTCCA  500

seq1  CCCAAGAGTGAAACACTTGTCACTGAACACAAGTCATCCTGCTGAGGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGTGAAACACTTGTCACTGAACACAAGTCATCCTGCTGAGGTTA  550

seq1  TAATAAAGCTTCAACAAAAAGTGCAGCACCTACGCTAATTGTATTCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGCTTCAACAAAAAGTGCAGCACCTACGCTAATTGTATTCCATA  600

seq1  GTAAGCTATTCAACATAAGGCTGCAATTATA-TTTCTACATACATATTCC  649
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTAAGCTATTCAACATAAGGCTGCAATTATATTTTCTACATACATATTCC  650

seq1  ATACATGCACATAAGCACAATTTAAATGTTGCAACA-TTTTCTAGAATCA  698
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATACATGCACATAAGCACAATTTAAATGTTGCAACATTTTTCTAGAATCA  700

seq1  TATCCTGAGTATAGTCATATACCCTCACTTACCTGTAGTATCCACAGAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGAGTATAGTCATATACCCTCACTTACCTGTAGTATCCACAGAGG  750

seq1  AAGTGATTTAATACCAAAGGGCACAGAACTGTGTCCTGACTAAAAATTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATTTAATACCAAAGGGCACAGAACTGTGTCCTGACTAAAAATTAT  800

seq1  TCTAGAAAATAAAAATGCTTAACATGCTGCCAAAACAAACAAGCAAACAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAATAAAAATGCTTAACATGCTGCCAAAACAAACAAGCAAACAA  850

seq1  ACAAAAGTGATAGAGTAATTCTGAAGAAGAGTC-TTCAGTTCATAAGAGT  897
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACAAAAGTGATAGAGTAATTCTGAAGAAGAGTCTTTCAGTTCATAAGAGT  900

seq1  CAATTATCT-AAGACTGACAGGCATCCGTTAACAAAACCAAGGAGCAAA-  945
      ||||||||| ||||||||||||||| ||||||||||||  ||||||||| 
seq2  CAATTATCTAAAGACTGACAGGCATTCGTTAACAAAACTCAGGAGCAAAG  950

seq1  GGAGCAAAAGTACTTTCAAAATTAAAAATTTGTCAACATGTA-CTGTTTT  994
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  GGAGCAAAAGTACTTTCAAAATT-AAAATTTGTCAACATGTACCTGTTTT  999

seq1  -GGTTACATACTGAAATATTTTTGATTAACATTATTTTTTACCGCTATCA  1043
       |||||||||||||||||  |||||||| |||||||||||||||||||||
seq2  GGGTTACATACTGAAATA--TTTGATTACCATTATTTTTTACCGCTATCA  1047

seq1  TTGGTAAGAAATTAAAAAAAAATAGATG-TTATATGTTCAGAAGTGAAAG  1092
      | ||| ||||  | || ||| ||||||| |||||||||||| ||||||| 
seq2  TGGGT-AGAA--TGAAGAAACATAGATGTTTATATGTTCAG-AGTGAAA-  1092

seq1  GGTAGGTTAATTTGGGAGTAAAACTATGAATATTTCGCCTACATTTGTAG  1142
      ||||| |  | | ||||||||||||||| ||| |||||||||| ||||||
seq2  GGTAGCT--ACTCGGGAGTAAAACTATG-ATA-TTCGCCTACA-TTGTAG  1137

seq1  ACTCTGTTTAACCATTTTGTCAATT  1167
      |||| | ||||||||||||||||||
seq2  ACTC-GGTTAACCATTTTGTCAATT  1161


seq1: chr4_91112638_91113689
seq2: B6Ng01-185N18.g_69_1129 (reverse)

seq1  -TTTTAGAT-CCTTTAACTG--TTCTTCTTC-GTTTTCCATATGCCTTTT  45
       ||| |||| ||||||||||  |  |||||| |||||||||| |||||||
seq2  TTTTAAGATCCCTTTAACTGATTATTTCTTCGGTTTTCCATAGGCCTTTT  50

seq1  CCTACTATTTTAGGCAG-ATGATCTTGATTTGAGCGATAACTTGAATTTT  94
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  CCTACTATTTTA-GCAGAATGATCTTGATTTGAGCGATAACTTGAATTTT  99

seq1  TGGAATAAACAGATATTC-AAGT-AATATTTTCCTCA-CTTTGTTTATGC  141
      ||| || ||||||||||| |||| ||||||||||||| ||||||||||||
seq2  TGG-ATTAACAGATATTCAAAGTAAATATTTTCCTCACCTTTGTTTATGC  148

seq1  CAAGTGTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTGTTTTTTGTTTT  191
      |||| | |||||| |||||||   ||||||| |||| ||||||| |||||
seq2  CAAG-GGTTTTTGATTTGTTT--GTTTGTTTCGTTTCTGTTTTTCGTTTT  195

seq1  TTGAAATTTCAGGTGAAAAAACCAAATGTAATGAGATGACAAGAGGTTTT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTTCAGGTGAAAAAACCAAATGTAATGAGATGACAAGAGGTTTT  245

seq1  AGTTTTAATCACCTT-AATAA-CTGG-ACTCAGAATTCTGTTCATGGTGA  288
      |  ||| |||||||| ||||| |||| |||||||||||||||||||||||
seq2  AAGTTTTATCACCTTAAATAACCTGGAACTCAGAATTCTGTTCATGGTGA  295

seq1  GAAAGATTTTGGGTAAAATTAATTTGG-AATACATTGTATTTGCATTAAG  337
      ||||||||| ||  ||||||||||||| ||||||||||||||||||||||
seq2  GAAAGATTTGGGTAAAAATTAATTTGGAAATACATTGTATTTGCATTAAG  345

seq1  GGTATAGGAA-TTACAGTGGAAAGCAGGAGACCATTAGTGGTTCAATGGT  386
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGGAATTTACAGTGGAAAGCAGGAGACCATTAGTGGTTCAATGGT  395

seq1  TAGGTCCTACAATTAGACTGTGTTAATTCAAATGCCAGCTGTATCATCTT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCCTACAATTAGACTGTGTTAATTCAAATGCCAGCTGTATCATCTT  445

seq1  TAGCTGTGTGATTGTGGGAAAATTACTAGACCTTTTCATTTGTTCATTTA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTGTGATTGTGGGAAAATTACTAGACCTTTTCATTTGTTCATTTA  495

seq1  TAGATAGGATGATAATGCTCACTGTTAATGACTCAAGGGTGGTTAACTGA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGGATGATAATGCTCACTGTTAATGACTCAAGGGTGGTTAACTGA  545

seq1  CTGCTGTGGTGATACCCATAAAACAGCATAGTGTCTGAAATATAAAAATA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGGTGATACCCATAAAACAGCATAGTGTCTGAAATATAAAAATA  595

seq1  TGGCTATTCTTATTTTTGTCATCAGAAGAGGAAAAGTTCCTCTGTCCAAG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATTCTTATTTTTGTCATCAGAAGAGGAAAAGTTCCTCTGTCCAAG  645

seq1  TCAATGATAGAGGAAGCAGGCAGGTGCTTCTAGAGTGATGGAGAACAATA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGATAGAGGAAGCAGGCAGGTGCTTCTAGAGTGATGGAGAACAATA  695

seq1  TTATAGTAGAAGACTGGCAGAAAGGCATTTATATATAATCCAGAATTAAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTAGAAGACTGGCAGAAAGGCATTTATATATAATCCAGAATTAAG  745

seq1  ATTCCTTTGGTAGTAGTCTGCAAAGATATAAGACTGTTTCCCAAATCTTT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTGGTAGTAGTCTGCAAAGATATAAGACTGTTTCCCAAATCTTT  795

seq1  CCCAATGTCAATAGAGTCCCCTAAACTCACCACTGCTTGATACTAATGCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGTCAATAGAGTCCCCTAAACTCACCACTGCTTGATACTAATGCA  845

seq1  ATGCTCTATAAAAGTAACTTTTATTCTCTAGATGTAAGCGTAATCTTGAA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTATAAAAGTAACTTTTATTCTCTAGATGTAAGCGTAATCTTGAA  895

seq1  GGCTTACTGCTGAAGAAGCTCACCTTTTCTAGTTCTTTCTGAACTCTGGC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTACTGCTGAAGAAGCTCACCTTTTCTAGTTCTTTCTGAACTCTGGC  945

seq1  TGGCTGGTTCAACTCAGCTGTTCTGTCTCAAAACTCCTTTCCAAGCTCAC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGTTCAACTCAGCTGTTCTGTCTCAAAACTCCTTTCCAAGCTCAC  995

seq1  TAATTCAAACTGGCTTCTCTCAACGTCTCACTGAATTGCGCTGCTTGGAA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAAACTGGCTTCTCTCAACGTCTCACTGAATTGCGCTGCTTGGAA  1045

seq1  AATTGCCTCTGAATTC  1052
      ||||||||||||||||
seq2  AATTGCCTCTGAATTC  1061


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