BAC Information

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BAC

Clone NameB6Ng01-185P04
Chromosome4 (Build37)
Map Location 30,388,507 - 30,538,159
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665185
Downstream geneLOC619906, LOC100040864, LOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185P04.bB6Ng01-185P04.g
ACCGA010923GA010924
length1,210933
definitionB6Ng01-185P04.b B6Ng01-185P04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,388,507 - 30,389,700)(30,537,230 - 30,538,159)
sequence
gaattcaaatacactgtaagtaagaaacagcagtctctgccagttaagat
atgttccctaaattaagaagagcaatattattaatctacatttaaaaaat
atttcttatatttttgagattataattacttcttctccttccctttcaat
cccacaaacccctctcgtttaccttccctttctattgctcgaatttctgt
tctcttattacttgttgatcacacacacacacacacacacacacacacac
acacacacacacatatatatatatatataaaatctattttaaaatcatag
ctgatactctcttcctacttcactgttttactgtgttgtttctcaaaata
gctcaggatatttattcggatgccactgaggcttctatatctcttacaca
tcctaaagcagtgactcgctattaactaaatatggaaaatgctcatatta
aatgcataaatctaagttcagtgcccaaatcttatattcaagccttggtt
tcttttgtaaccaattgttaactttgggatatggtaacccaaataaaagt
agttatatatgcccacctggtagaattaactcttacatgtgataataaac
taaaactgtatctctcttaaagctcaaaggggcctaatacaacaaactat
agctataaagggaaatataggaataatctgttcattatggaaatgatggg
tacataaaatttaacaaatgtaatttgaaaacattcacaaggtaaaattt
cctaaaattggacatttgtgttttaaaattgaatatagattagcagaatg
ccatttagaacattattttatccataaagttttaaatgtcctcaactata
acactaaacaaaacatatttccaaagataaatctgatatgtaaattagct
aataaatttcataaatctataaaaacttggacttatgggattttgagacc
tactataattaaaattgtttcttttgaccataaagaatattgaaaaaaga
aaattctatctgaaaacaattttttacaaaactatttaatttgttgggga
gttcaaaaaattgtcctatctttgttactgttctttcctccctcactgtt
atggtgatatcaataagcaattgctcaacgtaaaaaagctgaaacaaaga
aatggtgaggactcttggttctcaaaggttgtctgaattttccttgggtg
tggtgacaca

gaattctgaatacatataaaggatttcagatacattcaaataactctacg
agcatttttagctcctactggttttcaaatgtatttccgtgccattcttc
taaattaatatcattattatattttagtgttttgcataatctactggcag
ccatgatcaattaagagagagaagagattcaaggctgaaaagtctcagtg
tcttatttcagaataagtaaataaatcatgcctgaatttgagatcttgga
gttgtgctcatcagaattgagttctctcttgcacaagcaggaatgctaat
gcagactgatggcttagatgactaagtgccaaaccttgtatgttgctgca
aggctgtttgtggagtgtcagagccgctgcccttccacatgcctgtggtt
ataatacaacgtaggcagaagtgtgtcactagtagcagggaggacatggc
taaatgcctgtcagctactctaccatgccccgtttcctaaggttctaaat
acagttttgtacttaatgcttaatttcatggcatttgtttcccaatttgt
tgtattttaacgttgctcatggtagcatctcacaaaaagaatctataaaa
ttatattgtgtctactctattttgctataggtgtgtgacggcacttcact
ttgttatgggtattggtgtagaaaaatagaaattggtggatggttctgct
attttcaaaaatgttggcttttattagataaaaattcaaatgtcatattt
ttaaagccagggtgctagaaataaaatgcttgtatatatttttccaaaaa
aaaaattttaggatcaaaatacagcaagttagcctatgaatattacatat
gcatacatatatctgctttaatgtagctgtggggtgttcacccacccccc
atctggaactcagtttcttttaatcatggtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_30388507_30389700
seq2: B6Ng01-185P04.b_43_1252

seq1  GAATTCAAATACACTGTAAGTAAGAAACAGCAGTCTCTGCCAGTTAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATACACTGTAAGTAAGAAACAGCAGTCTCTGCCAGTTAAGAT  50

seq1  ATGTTCCCTAAATTAAGAAGAGCAATATTATTAATCTACATTTAAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCCTAAATTAAGAAGAGCAATATTATTAATCTACATTTAAAAAAT  100

seq1  ATTTCTTATATTTTTGAGATTATAATTACTTCTTCTCCTTCCCTTTCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTATATTTTTGAGATTATAATTACTTCTTCTCCTTCCCTTTCAAT  150

seq1  CCCACAAACCCCTCTCGTTTACCTTCCCTTTCTATTGCTCGAATTTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAACCCCTCTCGTTTACCTTCCCTTTCTATTGCTCGAATTTCTGT  200

seq1  TCTCTTATTACTTGTTGATCACACACACACACACACACACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATTACTTGTTGATCACACACACACACACACACACACACACACAC  250

seq1  ACACACACACACATATATATATATATATAAAATCTATTTTAAAATCATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACATATATATATATATATAAAATCTATTTTAAAATCATAG  300

seq1  CTGATACTCTCTTCCTACTTCACTGTTTTACTGTGTTGTTTCTCAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACTCTCTTCCTACTTCACTGTTTTACTGTGTTGTTTCTCAAAATA  350

seq1  GCTCAGGATATTTATTCGGATGCCACTGAGGCTTCTATATCTCTTACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGATATTTATTCGGATGCCACTGAGGCTTCTATATCTCTTACACA  400

seq1  TCCTAAAGCAGTGACTCGCTATTAACTAAATATGGAAAATGCTCATATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAGCAGTGACTCGCTATTAACTAAATATGGAAAATGCTCATATTA  450

seq1  AATGCATAAATCTAAGTTCAGTGCCCAAATCTTATATTCAAGCCTTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATAAATCTAAGTTCAGTGCCCAAATCTTATATTCAAGCCTTGGTT  500

seq1  TCTTTTGTAACCAATTGTTAACTTTGGGATATGGTAACCCAAATAAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTAACCAATTGTTAACTTTGGGATATGGTAACCCAAATAAAAGT  550

seq1  AGTTATATATGCCCACCTGGTAGAATTAACTCTTACATGTGATAATAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATATATGCCCACCTGGTAGAATTAACTCTTACATGTGATAATAAAC  600

seq1  TAAAACTGTATCTCTCTTAAAGCTCAAAGGGGCCTAATACAACAAACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGTATCTCTCTTAAAGCTCAAAGGGGCCTAATACAACAAACTAT  650

seq1  AGCTATAAAGGGAAATATAGGAATAATCTGTTCATTATGGAAATGATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAAAGGGAAATATAGGAATAATCTGTTCATTATGGAAATGATGGG  700

seq1  TACATAAAATTTAACAAATGTAATTTGAAAACATTCACAAGGTAAAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAAATTTAACAAATGTAATTTGAAAACATTCACAAGGTAAAATTT  750

seq1  CCTAAAATTGGACATTTGTGTTTTAAAATTGAATATAGATTAGCAGAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATTGGACATTTGTGTTTTAAAATTGAATATAGATTAGCAGAATG  800

seq1  CCATTTAGAACATTATTTTATCCATAAAGTTTT-AATGTCCTCAACTATA  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCATTTAGAACATTATTTTATCCATAAAGTTTTAAATGTCCTCAACTATA  850

seq1  ACACTAAACAAAACATATTTCCAAAGAT-AATCTGATATGTAAATTAGCT  898
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACACTAAACAAAACATATTTCCAAAGATAAATCTGATATGTAAATTAGCT  900

seq1  AATAAA-TTCATAAATCTATAAAAACTTGGACTTATGGGATTTTGAGACC  947
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTTCATAAATCTATAAAAACTTGGACTTATGGGATTTTGAGACC  950

seq1  TACTAT-ATTAAAA-TGTTTC-TTTGACCATAAAG-ATATTG-AAAAAGA  992
      |||||| ||||||| |||||| ||||||||||||| |||||| |||||||
seq2  TACTATAATTAAAATTGTTTCTTTTGACCATAAAGAATATTGAAAAAAGA  1000

seq1  AAA-TCTATCTG-AAACAA-TTTTTACAAAACTATTTAA-TTGTT-GGGA  1037
      ||| |||||||| |||||| ||||||||||||||||||| ||||| ||||
seq2  AAATTCTATCTGAAAACAATTTTTTACAAAACTATTTAATTTGTTGGGGA  1050

seq1  GTTCAAAATATTTGTTCTATCTTTGTTACTGTTTCCTTTCCT-CCTCACT  1086
      |||||||| | |||| |||||||||||||||||  ||||||| |||||||
seq2  GTTCAAAA-AATTGTCCTATCTTTGTTACTGTT--CTTTCCTCCCTCACT  1097

seq1  GTTATGGTGATAATCAT-AGC-ATTGCTCACAGTAAAAAAAGCCTGAAAC  1134
      ||||||||||||   || ||| ||||||||  ||||||||   |||||||
seq2  GTTATGGTGATATCAATAAGCAATTGCTCAACGTAAAAAA--GCTGAAAC  1145

seq1  AAAG--ATGGTGGAAGACATTCCTGTGTTCTCAAGGGTTG-CTGAATTT-  1180
      ||||  ||||| || |||  || || |||||||| ||||| |||||||| 
seq2  AAAGAAATGGT-GAGGAC--TCTTG-GTTCTCAAAGGTTGTCTGAATTTT  1191

seq1  -CCTGGGTG----GACACA  1194
       | ||||||    ||||||
seq2  CCTTGGGTGTGGTGACACA  1210


seq1: chr4_30537230_30538159
seq2: B6Ng01-185P04.g_67_999 (reverse)

seq1  TTTACCATGATTAAAAGAAACCTGAGTTCCAGATGGGGGGTGGGTG-ACA  49
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  TTTACCATGATTAAAAGAAA-CTGAGTTCCAGATGGGGGGTGGGTGAACA  49

seq1  -CCCACAGCTACA-TAAAGCAGATATATGTATGCATATGTAATATTCATA  97
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCCACAGCTACATTAAAGCAGATATATGTATGCATATGTAATATTCATA  99

seq1  GGCTAACTTGCTGTATTTTGATCCTAAAA-TTTTTTTTTGGAAAAATATA  146
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGCTAACTTGCTGTATTTTGATCCTAAAATTTTTTTTTTGGAAAAATATA  149

seq1  TACAAGCATTTTATTTCTAGCACCCTGGCTTTAAAAATATGACATTTGAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCATTTTATTTCTAGCACCCTGGCTTTAAAAATATGACATTTGAA  199

seq1  TTTTTATCTAATAAAAGCCAACATTTTTGAAAATAGCAGAACCATCCACC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCTAATAAAAGCCAACATTTTTGAAAATAGCAGAACCATCCACC  249

seq1  AATTTCTATTTTTCTACACCAATACCCATAACAAAGTGAAGTGCCGTCAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTATTTTTCTACACCAATACCCATAACAAAGTGAAGTGCCGTCAC  299

seq1  ACACCTATAGCAAAATAGAGTAGACACAATATAATTTTATAGATTCTTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTATAGCAAAATAGAGTAGACACAATATAATTTTATAGATTCTTTT  349

seq1  TGTGAGATGCTACCATGAGCAACGTTAAAATACAACAAATTGGGAAACAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGATGCTACCATGAGCAACGTTAAAATACAACAAATTGGGAAACAA  399

seq1  ATGCCATGAAATTAAGCATTAAGTACAAAACTGTATTTAGAACCTTAGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATGAAATTAAGCATTAAGTACAAAACTGTATTTAGAACCTTAGGA  449

seq1  AACGGGGCATGGTAGAGTAGCTGACAGGCATTTAGCCATGTCCTCCCTGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGGCATGGTAGAGTAGCTGACAGGCATTTAGCCATGTCCTCCCTGC  499

seq1  TACTAGTGACACACTTCTGCCTACGTTGTATTATAACCACAGGCATGTGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTGACACACTTCTGCCTACGTTGTATTATAACCACAGGCATGTGG  549

seq1  AAGGGCAGCGGCTCTGACACTCCACAAACAGCCTTGCAGCAACATACAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAGCGGCTCTGACACTCCACAAACAGCCTTGCAGCAACATACAAG  599

seq1  GTTTGGCACTTAGTCATCTAAGCCATCAGTCTGCATTAGCATTCCTGCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCACTTAGTCATCTAAGCCATCAGTCTGCATTAGCATTCCTGCTT  649

seq1  GTGCAAGAGAGAACTCAATTCTGATGAGCACAACTCCAAGATCTCAAATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGAGAGAACTCAATTCTGATGAGCACAACTCCAAGATCTCAAATT  699

seq1  CAGGCATGATTTATTTACTTATTCTGAAATAAGACACTGAGACTTTTCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATGATTTATTTACTTATTCTGAAATAAGACACTGAGACTTTTCAG  749

seq1  CCTTGAATCTCTTCTCTCTCTTAATTGATCATGGCTGCCAGTAGATTATG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAATCTCTTCTCTCTCTTAATTGATCATGGCTGCCAGTAGATTATG  799

seq1  CAAAACACTAAAATATAATAATGATATTAATTTAGAAGAATGGCACGGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACTAAAATATAATAATGATATTAATTTAGAAGAATGGCACGGAA  849

seq1  ATACATTTGAAAACCAGTAGGAGCTAAAAATGCTCGTAGAGTTATTTGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTGAAAACCAGTAGGAGCTAAAAATGCTCGTAGAGTTATTTGAA  899

seq1  TGTATCTGAAATCCTTTATATGTATTCAGAATTC  930
      ||||||||||||||||||||||||||||||||||
seq2  TGTATCTGAAATCCTTTATATGTATTCAGAATTC  933


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